Wall clock time and date at job start Wed Apr 1 2020 04:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 N 1.46505 * 109.46937 * 240.00196 * 2 1 3 5 5 C 1.36938 * 119.99669 * 84.99756 * 4 2 1 6 6 H 1.07995 * 120.00375 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99694 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99952 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00314 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47287 * 89.99632 * 9 7 5 11 11 H 1.48499 * 109.47248 * 209.99727 * 9 7 5 12 12 H 1.48505 * 109.47051 * 330.00010 * 9 7 5 13 13 C 1.52999 * 109.47353 * 120.00296 * 2 1 3 14 14 H 1.09002 * 109.70032 * 306.42681 * 13 2 1 15 15 C 1.53628 * 109.66334 * 67.01543 * 13 2 1 16 16 C 1.53040 * 109.23923 * 174.54814 * 15 13 2 17 17 C 1.53039 * 109.54100 * 298.51178 * 16 15 13 18 18 C 1.53187 * 109.31007 * 61.36646 * 17 16 15 19 19 N 1.46919 * 109.58917 * 186.06912 * 13 2 1 20 20 C 1.34782 * 120.63039 * 6.62646 * 19 13 2 21 21 O 1.21287 * 119.99646 * 354.78598 * 20 19 13 22 22 C 1.50698 * 120.00194 * 174.78212 * 20 19 13 23 23 O 1.42896 * 109.46959 * 180.02562 * 22 20 19 24 24 C 1.42902 * 114.00088 * 180.02562 * 23 22 20 25 25 C 1.50697 * 109.47529 * 180.02562 * 24 23 22 26 26 C 1.38678 * 120.41721 * 270.25040 * 25 24 23 27 27 C 1.38630 * 118.41604 * 180.23727 * 26 25 24 28 28 C 1.38221 * 119.16749 * 359.75946 * 27 26 25 29 29 N 1.31858 * 120.76116 * 359.97438 * 28 27 26 30 30 C 1.31890 * 121.72683 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47060 * 64.93303 * 1 2 3 32 32 H 1.08999 * 109.47178 * 184.94181 * 1 2 3 33 33 H 1.09006 * 109.46286 * 304.93896 * 1 2 3 34 34 H 0.96995 * 119.99985 * 265.00494 * 4 2 1 35 35 H 0.97005 * 120.00144 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.63116 * 54.55921 * 15 13 2 37 37 H 1.08995 * 109.45718 * 294.43602 * 15 13 2 38 38 H 1.09010 * 109.45758 * 178.49326 * 16 15 13 39 39 H 1.09001 * 109.45862 * 58.53732 * 16 15 13 40 40 H 1.09004 * 109.49638 * 301.41528 * 17 16 15 41 41 H 1.08996 * 109.52309 * 181.33684 * 17 16 15 42 42 H 1.09002 * 109.58661 * 185.57945 * 18 17 16 43 43 H 1.09001 * 109.58732 * 65.15487 * 18 17 16 44 44 H 1.08998 * 109.47211 * 60.00325 * 22 20 19 45 45 H 1.08996 * 109.47144 * 300.00393 * 22 20 19 46 46 H 1.09004 * 109.47344 * 60.00047 * 24 23 22 47 47 H 1.08998 * 109.47247 * 300.00673 * 24 23 22 48 48 H 1.08001 * 120.79167 * 359.97415 * 26 25 24 49 49 H 1.08000 * 120.41254 * 179.72958 * 27 26 25 50 50 H 1.07992 * 119.62020 * 180.02562 * 28 27 26 51 51 H 1.08000 * 119.61715 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6122 -0.6616 -3.5091 8 7 2.7383 -0.0048 -4.6427 9 14 3.0565 -2.4740 -3.4253 10 1 1.8594 -3.2925 -3.7452 11 1 4.1323 -2.7658 -4.4066 12 1 3.5311 -2.8047 -2.0576 13 6 2.0401 -0.7213 1.2492 14 1 1.5881 -0.2810 2.1380 15 6 1.6798 -2.2126 1.1684 16 6 2.3105 -2.9486 2.3527 17 6 3.8337 -2.8171 2.2848 18 6 4.2188 -1.3371 2.3748 19 7 3.5020 -0.5973 1.3272 20 6 4.1722 0.1845 0.4577 21 8 3.5816 0.7189 -0.4570 22 6 5.6554 0.3949 0.6220 23 8 6.1320 1.2557 -0.4142 24 6 7.5348 1.5207 -0.3504 25 6 7.9257 2.4340 -1.4835 26 6 8.3140 1.9086 -2.7067 27 6 8.6698 2.7866 -3.7188 28 6 8.6213 4.1469 -3.4785 29 7 8.2418 4.6111 -2.3041 30 6 7.8964 3.8056 -1.3185 31 1 -0.3633 0.4354 -0.9308 32 1 -0.3633 -1.0238 0.0885 33 1 -0.3632 0.5886 0.8425 34 1 2.2489 -1.6317 -1.1527 35 1 3.0616 -0.4620 -5.4348 36 1 2.0593 -2.6310 0.2361 37 1 0.5965 -2.3268 1.2040 38 1 2.0349 -4.0026 2.3136 39 1 1.9495 -2.5134 3.2846 40 1 4.1928 -3.2298 1.3421 41 1 4.2836 -3.3613 3.1151 42 1 5.2935 -1.2296 2.2277 43 1 3.9409 -0.9461 3.3536 44 1 6.1674 -0.5654 0.5613 45 1 5.8524 0.8509 1.5921 46 1 8.0857 0.5836 -0.4320 47 1 7.7713 1.9994 0.5999 48 1 8.3427 0.8407 -2.8658 49 1 8.9815 2.4124 -4.6828 50 1 8.8965 4.8375 -4.2618 51 1 7.5914 4.2228 -0.3702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266011076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:55 Heat of formation + Delta-G solvation = 19.289960 kcal Electronic energy + Delta-G solvation = -32384.583052 eV Core-core repulsion = 28286.572747 eV Total energy + Delta-G solvation = -4098.010305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.30659 -40.07539 -37.88510 -36.57614 -35.33968 -32.88430 -32.57603 -32.10809 -31.69730 -29.98900 -28.45773 -28.20899 -26.06472 -24.56197 -23.90659 -23.53379 -22.75105 -21.99556 -20.93835 -19.96920 -18.60829 -17.37171 -17.14467 -16.73294 -16.64215 -16.32215 -15.72310 -15.39497 -15.21257 -14.66792 -14.43141 -14.39298 -13.95048 -13.79160 -13.71352 -13.62109 -13.19291 -13.09226 -12.99199 -12.83991 -12.36599 -12.25033 -12.18428 -11.99554 -11.71036 -11.46451 -11.38569 -11.33692 -10.94068 -10.76758 -10.71971 -10.58037 -10.48844 -10.11530 -9.84544 -9.77348 -9.66411 -9.40645 -9.23183 -9.04610 -8.69195 -8.24962 -7.96293 -6.83455 -5.42397 -2.71112 1.06071 1.33479 3.04099 3.30220 3.48119 3.50604 3.56502 3.74129 4.18228 4.47515 4.69683 4.75403 4.76693 4.84434 4.87562 4.90999 4.99896 5.01019 5.07615 5.13122 5.21692 5.29240 5.30586 5.36239 5.39608 5.43400 5.54669 5.59347 5.63612 5.72394 5.77761 5.82563 5.86682 5.96199 6.02196 6.11164 6.14517 6.14984 6.27645 6.34776 6.43093 6.47327 6.69479 6.70650 6.84758 7.04257 7.15640 7.34294 7.88906 7.98367 8.36346 8.74627 8.96121 9.55126 10.26885 10.47620 11.78451 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.004027 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.322425 B = 6952.045960 C = 8394.990628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.176 3.824 3 H 0.088 0.912 4 N -0.729 5.729 5 C -0.175 4.175 6 H 0.087 0.913 7 C -0.011 4.011 8 N -0.947 5.947 9 Si 0.874 3.126 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.286 1.286 13 C 0.147 3.853 14 H 0.068 0.932 15 C -0.136 4.136 16 C -0.117 4.117 17 C -0.137 4.137 18 C 0.112 3.888 19 N -0.617 5.617 20 C 0.482 3.518 21 O -0.416 6.416 22 C 0.048 3.952 23 O -0.345 6.345 24 C 0.107 3.893 25 C -0.138 4.138 26 C -0.048 4.048 27 C -0.173 4.173 28 C 0.102 3.898 29 N -0.490 5.490 30 C 0.121 3.879 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.036 0.964 34 H 0.353 0.647 35 H 0.251 0.749 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.135 0.865 49 H 0.136 0.864 50 H 0.155 0.845 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.588 -1.512 16.883 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.066 3.934 3 H 0.106 0.894 4 N -0.373 5.373 5 C -0.305 4.305 6 H 0.105 0.895 7 C -0.203 4.203 8 N -0.598 5.598 9 Si 0.707 3.293 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.213 1.213 13 C 0.043 3.957 14 H 0.085 0.915 15 C -0.174 4.174 16 C -0.154 4.154 17 C -0.175 4.175 18 C -0.012 4.012 19 N -0.356 5.356 20 C 0.266 3.734 21 O -0.282 6.282 22 C -0.032 4.032 23 O -0.263 6.263 24 C 0.029 3.971 25 C -0.140 4.140 26 C -0.074 4.074 27 C -0.193 4.193 28 C -0.055 4.055 29 N -0.198 5.198 30 C -0.036 4.036 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.187 0.813 35 H 0.061 0.939 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.153 0.847 49 H 0.154 0.846 50 H 0.173 0.827 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 10.149 -0.004 16.134 19.060 hybrid contribution 0.667 -2.802 0.007 2.880 sum 10.816 -2.806 16.141 19.632 Atomic orbital electron populations 1.22572 0.99638 1.00150 1.00809 1.20656 0.90389 0.98011 0.84332 0.89411 1.42811 1.78964 1.08410 1.07087 1.18938 1.32254 0.94958 0.84360 0.89542 1.24514 1.03376 0.96329 0.96096 1.69686 1.55408 1.34612 1.00130 0.86683 0.77824 0.88702 0.76103 1.21881 1.22475 1.21307 1.21701 0.78889 0.95414 0.99668 0.91458 1.22103 1.00880 0.95710 0.98733 1.21500 0.94956 1.00307 0.98675 1.21927 0.96971 0.96267 1.02364 1.21598 0.96511 0.91756 0.91309 1.47859 1.06962 1.48056 1.32763 1.20078 0.88288 0.82060 0.82990 1.91116 1.66224 1.44379 1.26515 1.22279 0.94801 0.94676 0.91474 1.88227 1.21245 1.67208 1.49632 1.21207 0.83280 0.97001 0.95581 1.20534 1.01898 0.95444 0.96164 1.21545 0.93272 1.00806 0.91761 1.22150 1.02103 0.94770 1.00300 1.22784 0.94648 0.93825 0.94251 1.67707 1.11104 1.40066 1.00925 1.22629 0.93870 0.89259 0.97877 0.92007 0.93958 0.94543 0.81257 0.93901 0.91143 0.90731 0.92115 0.92036 0.91531 0.91246 0.90620 0.91841 0.91508 0.91356 0.92391 0.92236 0.84706 0.84591 0.82740 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.39 37.16 0.35 -2.75 16 2 C 0.18 3.53 1.88 -67.93 -0.13 3.40 16 3 H 0.09 2.01 5.90 -52.19 -0.31 1.70 16 4 N -0.73 -17.89 3.43 -53.42 -0.18 -18.07 16 5 C -0.17 -5.21 8.47 -15.06 -0.13 -5.33 16 6 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.95 -31.85 13.97 55.49 0.78 -31.07 16 9 Si 0.87 23.71 27.74 -169.99 -4.71 18.99 16 10 H -0.29 -7.83 7.11 56.52 0.40 -7.43 16 11 H -0.30 -8.23 7.11 56.52 0.40 -7.83 16 12 H -0.29 -7.34 6.52 56.52 0.37 -6.97 16 13 C 0.15 2.29 2.73 -67.38 -0.18 2.11 16 14 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.14 -1.95 4.89 -26.38 -0.13 -2.08 16 16 C -0.12 -1.27 5.88 -26.69 -0.16 -1.43 16 17 C -0.14 -1.41 6.08 -26.61 -0.16 -1.57 16 18 C 0.11 1.17 6.33 -3.71 -0.02 1.14 16 19 N -0.62 -9.28 2.96 -164.97 -0.49 -9.77 16 20 C 0.48 8.83 7.47 -10.98 -0.08 8.75 16 21 O -0.42 -9.96 9.24 -14.36 -0.13 -10.09 16 22 C 0.05 0.69 4.82 36.00 0.17 0.86 16 23 O -0.35 -6.01 9.86 -55.14 -0.54 -6.55 16 24 C 0.11 1.34 6.09 36.00 0.22 1.56 16 25 C -0.14 -1.95 5.53 -104.48 -0.58 -2.52 16 26 C -0.05 -0.66 9.86 -39.27 -0.39 -1.05 16 27 C -0.17 -2.21 10.11 -39.44 -0.40 -2.61 16 28 C 0.10 1.32 11.18 -17.55 -0.20 1.13 16 29 N -0.49 -7.28 10.36 -13.25 -0.14 -7.42 16 30 C 0.12 1.70 10.86 -17.55 -0.19 1.51 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.04 0.71 6.57 -51.93 -0.34 0.37 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.35 8.65 3.46 -40.82 -0.14 8.50 16 35 H 0.25 8.11 8.31 -40.82 -0.34 7.77 16 36 H 0.07 1.24 6.05 -51.92 -0.31 0.93 16 37 H 0.07 1.01 6.82 -51.93 -0.35 0.65 16 38 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.66 5.96 -51.93 -0.31 0.35 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 45 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 46 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 47 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 48 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 49 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 50 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 51 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -38.90 395.63 -9.64 -48.54 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.08 Total: 8.78 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.10 Total: 0.69 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.03 Total: -66.33 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.68 Total: -16.64 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.71 Total: 18.99 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.90 -9.64 -48.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266011076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.834 kcal (2) G-P(sol) polarization free energy of solvation -38.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds