Wall clock time and date at job start Wed Apr 1 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46955 * 2 1 4 4 N 1.46505 * 109.46937 * 240.00196 * 2 1 3 5 5 C 1.36938 * 119.99669 * 84.99756 * 4 2 1 6 6 H 1.07995 * 120.00375 * 0.02562 * 5 4 2 7 7 C 1.38809 * 119.99694 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99952 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00314 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47287 * 89.99632 * 9 7 5 11 11 H 1.48499 * 109.47248 * 209.99727 * 9 7 5 12 12 H 1.48505 * 109.47051 * 330.00010 * 9 7 5 13 13 C 1.52999 * 109.47353 * 120.00296 * 2 1 3 14 14 H 1.09002 * 109.70032 * 306.42681 * 13 2 1 15 15 C 1.53628 * 109.66334 * 67.01543 * 13 2 1 16 16 C 1.53040 * 109.23923 * 174.54814 * 15 13 2 17 17 C 1.53039 * 109.54100 * 298.51178 * 16 15 13 18 18 C 1.53187 * 109.31007 * 61.36646 * 17 16 15 19 19 N 1.46919 * 109.58917 * 186.06912 * 13 2 1 20 20 C 1.34782 * 120.63039 * 6.62646 * 19 13 2 21 21 O 1.21287 * 119.99646 * 354.78598 * 20 19 13 22 22 C 1.50698 * 120.00194 * 174.78212 * 20 19 13 23 23 O 1.42896 * 109.46959 * 180.02562 * 22 20 19 24 24 C 1.42902 * 114.00088 * 180.02562 * 23 22 20 25 25 C 1.50697 * 109.47529 * 180.02562 * 24 23 22 26 26 C 1.38678 * 120.41721 * 270.25040 * 25 24 23 27 27 C 1.38630 * 118.41604 * 180.23727 * 26 25 24 28 28 C 1.38221 * 119.16749 * 359.75946 * 27 26 25 29 29 N 1.31858 * 120.76116 * 359.97438 * 28 27 26 30 30 C 1.31890 * 121.72683 * 0.02562 * 29 28 27 31 31 H 1.08996 * 109.47060 * 64.93303 * 1 2 3 32 32 H 1.08999 * 109.47178 * 184.94181 * 1 2 3 33 33 H 1.09006 * 109.46286 * 304.93896 * 1 2 3 34 34 H 0.96995 * 119.99985 * 265.00494 * 4 2 1 35 35 H 0.97005 * 120.00144 * 180.02562 * 8 7 5 36 36 H 1.09009 * 109.63116 * 54.55921 * 15 13 2 37 37 H 1.08995 * 109.45718 * 294.43602 * 15 13 2 38 38 H 1.09010 * 109.45758 * 178.49326 * 16 15 13 39 39 H 1.09001 * 109.45862 * 58.53732 * 16 15 13 40 40 H 1.09004 * 109.49638 * 301.41528 * 17 16 15 41 41 H 1.08996 * 109.52309 * 181.33684 * 17 16 15 42 42 H 1.09002 * 109.58661 * 185.57945 * 18 17 16 43 43 H 1.09001 * 109.58732 * 65.15487 * 18 17 16 44 44 H 1.08998 * 109.47211 * 60.00325 * 22 20 19 45 45 H 1.08996 * 109.47144 * 300.00393 * 22 20 19 46 46 H 1.09004 * 109.47344 * 60.00047 * 24 23 22 47 47 H 1.08998 * 109.47247 * 300.00673 * 24 23 22 48 48 H 1.08001 * 120.79167 * 359.97415 * 26 25 24 49 49 H 1.08000 * 120.41254 * 179.72958 * 27 26 25 50 50 H 1.07992 * 119.62020 * 180.02562 * 28 27 26 51 51 H 1.08000 * 119.61715 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1490 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6122 -0.6616 -3.5091 8 7 2.7383 -0.0048 -4.6427 9 14 3.0565 -2.4740 -3.4253 10 1 1.8594 -3.2925 -3.7452 11 1 4.1323 -2.7658 -4.4066 12 1 3.5311 -2.8047 -2.0576 13 6 2.0401 -0.7213 1.2492 14 1 1.5881 -0.2810 2.1380 15 6 1.6798 -2.2126 1.1684 16 6 2.3105 -2.9486 2.3527 17 6 3.8337 -2.8171 2.2848 18 6 4.2188 -1.3371 2.3748 19 7 3.5020 -0.5973 1.3272 20 6 4.1722 0.1845 0.4577 21 8 3.5816 0.7189 -0.4570 22 6 5.6554 0.3949 0.6220 23 8 6.1320 1.2557 -0.4142 24 6 7.5348 1.5207 -0.3504 25 6 7.9257 2.4340 -1.4835 26 6 8.3140 1.9086 -2.7067 27 6 8.6698 2.7866 -3.7188 28 6 8.6213 4.1469 -3.4785 29 7 8.2418 4.6111 -2.3041 30 6 7.8964 3.8056 -1.3185 31 1 -0.3633 0.4354 -0.9308 32 1 -0.3633 -1.0238 0.0885 33 1 -0.3632 0.5886 0.8425 34 1 2.2489 -1.6317 -1.1527 35 1 3.0616 -0.4620 -5.4348 36 1 2.0593 -2.6310 0.2361 37 1 0.5965 -2.3268 1.2040 38 1 2.0349 -4.0026 2.3136 39 1 1.9495 -2.5134 3.2846 40 1 4.1928 -3.2298 1.3421 41 1 4.2836 -3.3613 3.1151 42 1 5.2935 -1.2296 2.2277 43 1 3.9409 -0.9461 3.3536 44 1 6.1674 -0.5654 0.5613 45 1 5.8524 0.8509 1.5921 46 1 8.0857 0.5836 -0.4320 47 1 7.7713 1.9994 0.5999 48 1 8.3427 0.8407 -2.8658 49 1 8.9815 2.4124 -4.6828 50 1 8.8965 4.8375 -4.2618 51 1 7.5914 4.2228 -0.3702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266011076.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:54 Heat of formation + Delta-G solvation = -8.104203 kcal Electronic energy + Delta-G solvation = -32385.770952 eV Core-core repulsion = 28286.572747 eV Total energy + Delta-G solvation = -4099.198205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55294 -41.12048 -39.03217 -37.81534 -36.96566 -34.20666 -33.89100 -33.66348 -32.71790 -31.74315 -29.98069 -29.30871 -27.10131 -25.80108 -25.40926 -24.57203 -24.39746 -23.00714 -22.01760 -21.44588 -19.94902 -19.38106 -18.23933 -17.85916 -17.67880 -17.45013 -16.92746 -16.68795 -16.36568 -16.26059 -15.83726 -15.53059 -15.29337 -15.07706 -14.97619 -14.75225 -14.58459 -14.27151 -14.17708 -14.03942 -13.93654 -13.65579 -13.39732 -13.24822 -13.12707 -12.89263 -12.84934 -12.63178 -12.42801 -12.32671 -12.01647 -11.89654 -11.75562 -11.60096 -11.43578 -11.25030 -10.86997 -10.84132 -10.71228 -10.44932 -10.07704 -9.65978 -9.38382 -8.87793 -7.83594 -5.07691 0.03316 0.27993 1.25493 1.32968 1.38376 1.91084 2.02741 2.55320 2.69649 3.17635 3.47043 3.50466 3.63502 3.78664 3.84179 3.86883 3.92835 4.00405 4.01971 4.04286 4.09654 4.17027 4.23126 4.33288 4.36416 4.38753 4.40812 4.46539 4.61901 4.67038 4.72538 4.80851 4.81189 4.85522 4.95746 5.00137 5.08260 5.12106 5.13689 5.24655 5.26252 5.26554 5.44251 5.51835 5.54104 5.71062 5.90228 5.98800 6.15972 6.38317 6.70311 6.94368 7.27307 7.66995 8.04650 8.24939 9.41906 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009877 B = 0.004027 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.322425 B = 6952.045960 C = 8394.990628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.169 3.831 3 H 0.054 0.946 4 N -0.723 5.723 5 C -0.138 4.138 6 H 0.034 0.966 7 C -0.091 4.091 8 N -1.003 6.003 9 Si 0.950 3.050 10 H -0.283 1.283 11 H -0.304 1.304 12 H -0.265 1.265 13 C 0.150 3.850 14 H 0.100 0.900 15 C -0.134 4.134 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.104 3.896 19 N -0.614 5.614 20 C 0.470 3.530 21 O -0.495 6.495 22 C 0.051 3.949 23 O -0.396 6.396 24 C 0.106 3.894 25 C -0.153 4.153 26 C -0.070 4.070 27 C -0.178 4.178 28 C 0.091 3.909 29 N -0.514 5.514 30 C 0.105 3.895 31 H 0.023 0.977 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.356 0.644 35 H 0.246 0.754 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.040 0.960 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.141 0.859 49 H 0.160 0.840 50 H 0.182 0.818 51 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.588 -4.071 21.178 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.061 3.939 3 H 0.072 0.928 4 N -0.367 5.367 5 C -0.270 4.270 6 H 0.052 0.948 7 C -0.279 4.279 8 N -0.659 5.659 9 Si 0.781 3.219 10 H -0.210 1.210 11 H -0.232 1.232 12 H -0.190 1.190 13 C 0.047 3.953 14 H 0.117 0.883 15 C -0.172 4.172 16 C -0.149 4.149 17 C -0.173 4.173 18 C -0.017 4.017 19 N -0.352 5.352 20 C 0.256 3.744 21 O -0.367 6.367 22 C -0.028 4.028 23 O -0.315 6.315 24 C 0.030 3.970 25 C -0.155 4.155 26 C -0.096 4.096 27 C -0.198 4.198 28 C -0.066 4.066 29 N -0.223 5.223 30 C -0.051 4.051 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.191 0.809 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.129 0.871 46 H 0.095 0.905 47 H 0.110 0.890 48 H 0.159 0.841 49 H 0.177 0.823 50 H 0.199 0.801 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 11.145 -2.609 20.562 23.534 hybrid contribution 0.323 -1.878 -1.208 2.256 sum 11.468 -4.487 19.355 22.940 Atomic orbital electron populations 1.22421 0.98045 1.01467 1.00334 1.20739 0.91325 0.96786 0.85046 0.92829 1.42708 1.78856 1.08278 1.06836 1.18685 1.29252 0.92711 0.86360 0.94790 1.25268 1.05199 1.01649 0.95772 1.69913 1.58177 1.36818 1.01027 0.85439 0.77361 0.82372 0.76748 1.21025 1.23189 1.19026 1.21614 0.79800 0.96048 0.97874 0.88252 1.22081 1.01668 0.94617 0.98854 1.21498 0.95117 1.00525 0.97737 1.21947 0.96680 0.96205 1.02515 1.22014 0.97361 0.91386 0.90983 1.48016 1.06862 1.47331 1.32958 1.20956 0.90057 0.81111 0.82295 1.91099 1.68056 1.47633 1.29878 1.22388 0.91893 0.95879 0.92637 1.88165 1.23850 1.68110 1.51375 1.21418 0.81288 0.97897 0.96414 1.20833 1.01832 0.95869 0.96969 1.21865 0.93810 1.01512 0.92385 1.22480 1.01480 0.94715 1.01110 1.23293 0.94184 0.94664 0.94437 1.67723 1.11943 1.40840 1.01787 1.22976 0.94009 0.89589 0.98554 0.95748 0.92303 0.91091 0.80909 0.94553 0.94794 0.89901 0.91115 0.89483 0.94069 0.87700 0.88573 0.88641 0.89225 0.87078 0.90501 0.88970 0.84094 0.82261 0.80092 0.81248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 9.39 71.98 0.68 -5.18 16 2 C 0.17 6.88 1.88 44.99 0.08 6.97 16 3 H 0.05 2.60 5.90 -6.61 -0.04 2.56 16 4 N -0.72 -36.46 3.43 -322.93 -1.11 -37.56 16 5 C -0.14 -8.72 8.47 84.03 0.71 -8.00 16 6 H 0.03 2.47 8.06 -2.91 -0.02 2.44 16 7 C -0.09 -5.98 5.50 84.86 0.47 -5.52 16 8 N -1.00 -71.43 13.97 21.65 0.30 -71.13 16 9 Si 0.95 50.90 27.74 68.60 1.90 52.80 16 10 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 11 H -0.30 -16.52 7.11 99.48 0.71 -15.81 16 12 H -0.26 -12.98 6.52 99.48 0.65 -12.33 16 13 C 0.15 4.33 2.73 45.12 0.12 4.45 16 14 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.13 -3.42 4.89 30.82 0.15 -3.27 16 16 C -0.11 -1.85 5.88 30.62 0.18 -1.67 16 17 C -0.14 -2.09 6.08 30.67 0.19 -1.90 16 18 C 0.10 1.63 6.33 86.36 0.55 2.18 16 19 N -0.61 -16.80 2.96 -794.22 -2.35 -19.15 16 20 C 0.47 16.87 7.47 87.66 0.65 17.52 16 21 O -0.49 -24.71 9.24 15.99 0.15 -24.56 16 22 C 0.05 1.36 4.82 71.24 0.34 1.70 16 23 O -0.40 -13.67 9.86 -129.94 -1.28 -14.95 16 24 C 0.11 2.52 6.09 71.23 0.43 2.96 16 25 C -0.15 -4.32 5.53 -19.77 -0.11 -4.43 16 26 C -0.07 -1.97 9.86 22.47 0.22 -1.74 16 27 C -0.18 -4.58 10.11 22.36 0.23 -4.35 16 28 C 0.09 2.38 11.18 84.68 0.95 3.33 16 29 N -0.51 -15.55 10.36 -195.85 -2.03 -17.58 16 30 C 0.11 3.00 10.86 84.67 0.92 3.92 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.90 6.57 -2.39 -0.02 1.88 16 33 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.36 17.47 3.46 -92.71 -0.32 17.15 16 35 H 0.25 16.75 8.31 -92.70 -0.77 15.98 16 36 H 0.03 1.12 6.05 -2.38 -0.01 1.11 16 37 H 0.08 1.95 6.82 -2.39 -0.02 1.94 16 38 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.10 1.14 5.96 -2.39 -0.01 1.13 16 43 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.09 1.92 7.48 -2.39 -0.02 1.91 16 45 H 0.11 1.93 8.11 -2.39 -0.02 1.91 16 46 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 47 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 48 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 49 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 50 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 51 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -94.83 395.63 2.87 -91.96 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.52 Total: 33.24 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 6.76 Total: 6.94 kcal Atomic # 7 Polarization: -140.24 SS G_CDS: -5.19 Total: -145.43 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.13 Total: -39.51 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 1.90 Total: 52.80 kcal Total: -94.83 2.87 -91.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266011076.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.856 kcal (2) G-P(sol) polarization free energy of solvation -94.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds