Wall clock time and date at job start Wed Apr 1 2020 04:42:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09000 * 109.47101 * 2 1
4 4 N 1.46500 * 109.46838 * 119.99435 * 2 1 3
5 5 C 1.36931 * 120.00391 * 274.99924 * 4 2 1
6 6 H 1.08000 * 120.00073 * 0.02562 * 5 4 2
7 7 C 1.38816 * 120.00341 * 180.02562 * 5 4 2
8 8 N 1.31621 * 119.99832 * 359.97438 * 7 5 4
9 9 Si 1.86800 * 120.00118 * 180.02562 * 7 5 4
10 10 H 1.48497 * 109.47118 * 0.02562 * 9 7 5
11 11 H 1.48497 * 109.47314 * 119.99926 * 9 7 5
12 12 H 1.48504 * 109.46786 * 240.00042 * 9 7 5
13 13 C 1.52999 * 109.47032 * 239.99464 * 2 1 3
14 14 H 1.08997 * 109.52600 * 299.92008 * 13 2 1
15 15 C 1.53039 * 109.49748 * 60.00386 * 13 2 1
16 16 C 1.53041 * 109.53647 * 181.31675 * 15 13 2
17 17 C 1.53194 * 109.30970 * 298.63046 * 16 15 13
18 18 N 1.46923 * 108.77322 * 54.64020 * 17 16 15
19 19 C 1.34784 * 120.62964 * 126.36706 * 18 17 16
20 20 O 1.21283 * 119.99649 * 179.97438 * 19 18 17
21 21 C 1.50694 * 119.99988 * 359.97438 * 19 18 17
22 22 C 1.53001 * 109.47168 * 179.97438 * 21 19 18
23 23 N 1.46504 * 109.47415 * 179.97438 * 22 21 19
24 24 C 1.35757 * 119.62456 * 269.73142 * 23 22 21
25 25 C 1.35355 * 120.69962 * 179.71674 * 24 23 22
26 26 C 1.40196 * 119.94715 * 0.52995 * 25 24 23
27 27 C 1.36406 * 119.26563 * 359.74407 * 26 25 24
28 28 C 1.34655 * 119.62000 * 90.00158 * 23 22 21
29 29 O 1.22061 * 119.98816 * 359.97438 * 28 23 22
30 30 C 1.46927 * 118.73985 * 306.63925 * 18 17 16
31 31 H 1.09000 * 109.47106 * 180.02562 * 1 2 3
32 32 H 1.08998 * 109.46970 * 300.00647 * 1 2 3
33 33 H 1.09004 * 109.47046 * 60.00152 * 1 2 3
34 34 H 0.97007 * 119.99979 * 95.00245 * 4 2 1
35 35 H 0.97001 * 119.99986 * 180.02562 * 8 7 5
36 36 H 1.09000 * 109.45771 * 61.29617 * 15 13 2
37 37 H 1.08997 * 109.45929 * 301.33204 * 15 13 2
38 38 H 1.08996 * 109.49638 * 178.68503 * 16 15 13
39 39 H 1.08997 * 109.50160 * 58.58619 * 16 15 13
40 40 H 1.08998 * 109.58766 * 294.84948 * 17 16 15
41 41 H 1.09006 * 109.58377 * 174.42601 * 17 16 15
42 42 H 1.08998 * 109.47224 * 299.99701 * 21 19 18
43 43 H 1.09002 * 109.47054 * 60.00213 * 21 19 18
44 44 H 1.09000 * 109.47339 * 299.99895 * 22 21 19
45 45 H 1.09002 * 109.46926 * 60.00175 * 22 21 19
46 46 H 1.08003 * 119.65106 * 359.97438 * 24 23 22
47 47 H 1.07994 * 120.02447 * 180.27607 * 25 24 23
48 48 H 1.07995 * 120.36949 * 179.76725 * 26 25 24
49 49 H 1.07993 * 120.34609 * 180.02562 * 27 26 25
50 50 H 1.09003 * 109.58790 * 173.15076 * 30 18 17
51 51 H 1.09007 * 109.58432 * 293.56887 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0183 -0.6905 1.1963
5 6 2.1491 -0.0074 2.3758
6 1 1.8919 1.0404 2.4243
7 6 2.6122 -0.6615 3.5091
8 7 2.9252 -1.9386 3.4501
9 14 2.7899 0.2703 5.1183
10 1 2.3739 1.6821 4.9213
11 1 1.9297 -0.3590 6.1523
12 1 4.2069 0.2283 5.5607
13 6 2.0400 -0.7214 -1.2492
14 1 1.6783 -1.7496 -1.2493
15 6 1.5303 -0.0005 -2.4992
16 6 2.0126 -0.7402 -3.7491
17 6 3.5443 -0.7372 -3.7800
18 7 4.0438 -1.2973 -2.5169
19 6 4.9181 -2.3231 -2.5188
20 8 5.3233 -2.7763 -1.4694
21 6 5.3919 -2.9069 -3.8248
22 6 6.3713 -4.0491 -3.5474
23 7 6.8315 -4.6171 -4.8170
24 6 6.1477 -5.6466 -5.3787
25 6 6.5503 -6.1840 -6.5539
26 6 7.6910 -5.6844 -7.1977
27 6 8.3800 -4.6536 -6.6290
28 6 7.9312 -4.1156 -5.4106
29 8 8.5380 -3.1928 -4.8909
30 6 3.5676 -0.7219 -1.2517
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 2.2490 -1.6317 1.1528
35 1 3.2485 -2.3959 4.2422
36 1 1.9126 1.0202 -2.5110
37 1 0.4405 0.0202 -2.4875
38 1 1.6299 -0.2397 -4.6385
39 1 1.6512 -1.7682 -3.7257
40 1 3.9054 0.2848 -3.8948
41 1 3.8941 -1.3463 -4.6136
42 1 4.5373 -3.2883 -4.3836
43 1 5.8919 -2.1337 -4.4082
44 1 7.2259 -3.6674 -2.9887
45 1 5.8717 -4.8224 -2.9637
46 1 5.2707 -6.0382 -4.8847
47 1 5.9955 -6.9998 -6.9932
48 1 8.0205 -6.1106 -8.1337
49 1 9.2609 -4.2549 -7.1100
50 1 3.9328 -1.3209 -0.4174
51 1 3.9308 0.3014 -1.1560
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001268171125.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:12
Heat of formation + Delta-G solvation = -29.387404 kcal
Electronic energy + Delta-G solvation = -30861.011004 eV
Core-core repulsion = 26760.889891 eV
Total energy + Delta-G solvation = -4100.121113 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.64257 -40.14896 -37.92424 -37.14196 -35.47268 -35.31892 -33.00812 -31.78356
-31.52594 -30.15436 -29.73203 -28.21929 -26.02328 -25.04482 -24.10219 -23.63038
-23.00140 -22.30702 -21.03495 -19.58521 -18.85910 -18.06533 -17.59963 -17.18873
-16.84422 -16.37810 -16.20842 -15.68978 -15.39727 -14.87346 -14.85104 -14.46275
-14.42913 -14.21768 -13.78987 -13.60776 -13.46217 -13.13587 -12.85372 -12.77654
-12.71377 -12.54455 -12.34268 -12.26697 -12.07648 -11.98127 -11.46919 -11.34285
-11.11966 -11.00816 -10.85164 -10.71409 -10.61787 -10.47192 -10.25050 -10.17552
-10.13359 -9.86358 -9.62893 -9.51787 -8.87950 -8.46823 -8.29061 -6.90549
-5.70208 -2.99418 0.50440 1.56719 2.28318 2.69116 3.09081 3.37517
3.46998 3.52123 3.54793 4.21220 4.33939 4.44057 4.52951 4.57249
4.62001 4.72173 4.79747 4.87472 4.90483 4.97424 5.00592 5.08430
5.23656 5.35090 5.40848 5.45112 5.59967 5.61503 5.65262 5.68842
5.76496 5.77356 5.80921 5.91177 5.93570 6.00316 6.10472 6.18629
6.19460 6.21940 6.43564 6.47800 6.51382 6.71729 6.74142 6.79803
6.92267 7.10687 7.50878 7.75473 7.78147 8.26087 8.47361 9.58669
10.16164 10.50466 11.52064
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014015 B = 0.002366 C = 0.002143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1997.328838 B =11830.108644 C =13065.499200
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.180 3.820
3 H 0.047 0.953
4 N -0.724 5.724
5 C -0.238 4.238
6 H 0.070 0.930
7 C -0.013 4.013
8 N -0.929 5.929
9 Si 0.903 3.097
10 H -0.281 1.281
11 H -0.293 1.293
12 H -0.292 1.292
13 C -0.102 4.102
14 H 0.069 0.931
15 C -0.115 4.115
16 C -0.133 4.133
17 C 0.105 3.895
18 N -0.609 5.609
19 C 0.516 3.484
20 O -0.528 6.528
21 C -0.152 4.152
22 C 0.104 3.896
23 N -0.495 5.495
24 C 0.137 3.863
25 C -0.238 4.238
26 C -0.017 4.017
27 C -0.246 4.246
28 C 0.509 3.491
29 O -0.548 6.548
30 C 0.122 3.878
31 H 0.044 0.956
32 H 0.052 0.948
33 H 0.038 0.962
34 H 0.384 0.616
35 H 0.254 0.746
36 H 0.063 0.937
37 H 0.070 0.930
38 H 0.072 0.928
39 H 0.065 0.935
40 H 0.069 0.931
41 H 0.078 0.922
42 H 0.095 0.905
43 H 0.099 0.901
44 H 0.111 0.889
45 H 0.103 0.897
46 H 0.163 0.837
47 H 0.144 0.856
48 H 0.133 0.867
49 H 0.147 0.853
50 H 0.108 0.892
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.843 -6.518 -26.942 27.780
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.069 3.931
3 H 0.065 0.935
4 N -0.365 5.365
5 C -0.369 4.369
6 H 0.088 0.912
7 C -0.209 4.209
8 N -0.577 5.577
9 Si 0.735 3.265
10 H -0.206 1.206
11 H -0.220 1.220
12 H -0.219 1.219
13 C -0.122 4.122
14 H 0.087 0.913
15 C -0.153 4.153
16 C -0.171 4.171
17 C -0.018 4.018
18 N -0.343 5.343
19 C 0.302 3.698
20 O -0.404 6.404
21 C -0.193 4.193
22 C -0.018 4.018
23 N -0.205 5.205
24 C 0.010 3.990
25 C -0.261 4.261
26 C -0.039 4.039
27 C -0.268 4.268
28 C 0.311 3.689
29 O -0.430 6.430
30 C 0.001 3.999
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.057 0.943
34 H 0.218 0.782
35 H 0.064 0.936
36 H 0.082 0.918
37 H 0.088 0.912
38 H 0.090 0.910
39 H 0.084 0.916
40 H 0.087 0.913
41 H 0.096 0.904
42 H 0.114 0.886
43 H 0.118 0.882
44 H 0.130 0.870
45 H 0.121 0.879
46 H 0.180 0.820
47 H 0.162 0.838
48 H 0.151 0.849
49 H 0.164 0.836
50 H 0.126 0.874
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 2.486 -6.004 -25.835 26.640
hybrid contribution -0.048 0.092 0.747 0.755
sum 2.438 -5.912 -25.088 25.890
Atomic orbital electron populations
1.22480 0.99313 1.00764 0.99880 1.20174 0.91828 0.95274 0.85788
0.93527 1.42452 1.78074 1.10733 1.05285 1.19233 1.36558 0.93805
0.87320 0.91245 1.24737 1.02207 0.95950 0.97997 1.69676 1.50731
1.08603 1.28688 0.86171 0.77306 0.78757 0.84271 1.20643 1.21997
1.21907 1.21676 0.94758 1.00435 0.95355 0.91273 1.21632 1.01078
0.99107 0.93520 1.21918 0.94792 1.01532 0.98905 1.21750 0.94818
0.99356 0.85861 1.48178 1.44187 1.33973 1.07945 1.20192 0.79148
0.79907 0.90527 1.90802 1.56224 1.60107 1.33293 1.21948 1.00250
0.99607 0.97496 1.21783 1.00174 0.96787 0.83045 1.45660 1.24316
1.28654 1.21870 1.22063 0.95662 0.87357 0.93967 1.20660 1.01684
1.06281 0.97516 1.21445 0.92111 0.92329 0.98006 1.22148 1.04926
1.02141 0.97554 1.17231 0.80226 0.84643 0.86783 1.90999 1.55923
1.29849 1.66193 1.21634 0.93833 0.99121 0.85357 0.93639 0.92879
0.94302 0.78211 0.93597 0.91839 0.91166 0.90982 0.91629 0.91272
0.90377 0.88634 0.88231 0.87040 0.87906 0.81997 0.83786 0.84904
0.83567 0.87402 0.91780
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16
2 C 0.18 3.44 2.48 -67.93 -0.17 3.27 16
3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16
4 N -0.72 -17.94 4.52 -53.43 -0.24 -18.18 16
5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16
6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16
7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16
8 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16
9 Si 0.90 22.83 29.55 -169.99 -5.02 17.80 16
10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16
12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16
13 C -0.10 -1.61 1.96 -90.72 -0.18 -1.79 16
14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16
15 C -0.12 -1.35 4.85 -26.69 -0.13 -1.48 16
16 C -0.13 -1.23 6.08 -26.61 -0.16 -1.40 16
17 C 0.11 1.03 6.34 -3.71 -0.02 1.00 16
18 N -0.61 -8.47 2.98 -173.03 -0.52 -8.98 16
19 C 0.52 7.64 7.70 -10.98 -0.08 7.55 16
20 O -0.53 -10.34 15.40 5.56 0.09 -10.25 16
21 C -0.15 -1.57 4.37 -27.89 -0.12 -1.69 16
22 C 0.10 1.12 4.62 -4.04 -0.02 1.10 16
23 N -0.49 -4.70 2.58 -119.77 -0.31 -5.01 16
24 C 0.14 0.83 10.28 -16.84 -0.17 0.66 16
25 C -0.24 -1.22 10.01 -39.87 -0.40 -1.61 16
26 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16
27 C -0.25 -2.21 9.99 -39.38 -0.39 -2.60 16
28 C 0.51 6.14 7.41 -15.45 -0.11 6.02 16
29 O -0.55 -8.96 16.64 4.86 0.08 -8.88 16
30 C 0.12 2.08 5.44 -3.93 -0.02 2.06 16
31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16
34 H 0.38 10.35 7.61 -40.82 -0.31 10.04 16
35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16
36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16
38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
41 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16
42 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16
43 H 0.10 1.04 7.94 -51.93 -0.41 0.63 16
44 H 0.11 1.54 7.35 -51.93 -0.38 1.16 16
45 H 0.10 0.99 7.96 -51.93 -0.41 0.58 16
46 H 0.16 0.51 8.03 -52.48 -0.42 0.09 16
47 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16
48 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16
49 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16
50 H 0.11 2.35 6.50 -51.93 -0.34 2.01 16
51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
LS Contribution 407.57 15.07 6.14 6.14
Total: -1.00 -36.42 407.57 -9.61 -46.04
By element:
Atomic # 1 Polarization: 16.65 SS G_CDS: -8.26 Total: 8.39 kcal
Atomic # 6 Polarization: 3.15 SS G_CDS: -2.29 Total: 0.86 kcal
Atomic # 7 Polarization: -59.76 SS G_CDS: -0.34 Total: -60.10 kcal
Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal
Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -36.42 -9.61 -46.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268171125.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.650 kcal
(2) G-P(sol) polarization free energy of solvation -36.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.387 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds