Wall clock time and date at job start Wed Apr 1 2020 04:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47101 * 2 1 4 4 N 1.46500 * 109.46838 * 119.99435 * 2 1 3 5 5 C 1.36931 * 120.00391 * 274.99924 * 4 2 1 6 6 H 1.08000 * 120.00073 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00341 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00118 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47314 * 119.99926 * 9 7 5 12 12 H 1.48504 * 109.46786 * 240.00042 * 9 7 5 13 13 C 1.52999 * 109.47032 * 239.99464 * 2 1 3 14 14 H 1.08997 * 109.52600 * 299.92008 * 13 2 1 15 15 C 1.53039 * 109.49748 * 60.00386 * 13 2 1 16 16 C 1.53041 * 109.53647 * 181.31675 * 15 13 2 17 17 C 1.53194 * 109.30970 * 298.63046 * 16 15 13 18 18 N 1.46923 * 108.77322 * 54.64020 * 17 16 15 19 19 C 1.34784 * 120.62964 * 126.36706 * 18 17 16 20 20 O 1.21283 * 119.99649 * 179.97438 * 19 18 17 21 21 C 1.50694 * 119.99988 * 359.97438 * 19 18 17 22 22 C 1.53001 * 109.47168 * 179.97438 * 21 19 18 23 23 N 1.46504 * 109.47415 * 179.97438 * 22 21 19 24 24 C 1.35757 * 119.62456 * 269.73142 * 23 22 21 25 25 C 1.35355 * 120.69962 * 179.71674 * 24 23 22 26 26 C 1.40196 * 119.94715 * 0.52995 * 25 24 23 27 27 C 1.36406 * 119.26563 * 359.74407 * 26 25 24 28 28 C 1.34655 * 119.62000 * 90.00158 * 23 22 21 29 29 O 1.22061 * 119.98816 * 359.97438 * 28 23 22 30 30 C 1.46927 * 118.73985 * 306.63925 * 18 17 16 31 31 H 1.09000 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46970 * 300.00647 * 1 2 3 33 33 H 1.09004 * 109.47046 * 60.00152 * 1 2 3 34 34 H 0.97007 * 119.99979 * 95.00245 * 4 2 1 35 35 H 0.97001 * 119.99986 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.45771 * 61.29617 * 15 13 2 37 37 H 1.08997 * 109.45929 * 301.33204 * 15 13 2 38 38 H 1.08996 * 109.49638 * 178.68503 * 16 15 13 39 39 H 1.08997 * 109.50160 * 58.58619 * 16 15 13 40 40 H 1.08998 * 109.58766 * 294.84948 * 17 16 15 41 41 H 1.09006 * 109.58377 * 174.42601 * 17 16 15 42 42 H 1.08998 * 109.47224 * 299.99701 * 21 19 18 43 43 H 1.09002 * 109.47054 * 60.00213 * 21 19 18 44 44 H 1.09000 * 109.47339 * 299.99895 * 22 21 19 45 45 H 1.09002 * 109.46926 * 60.00175 * 22 21 19 46 46 H 1.08003 * 119.65106 * 359.97438 * 24 23 22 47 47 H 1.07994 * 120.02447 * 180.27607 * 25 24 23 48 48 H 1.07995 * 120.36949 * 179.76725 * 26 25 24 49 49 H 1.07993 * 120.34609 * 180.02562 * 27 26 25 50 50 H 1.09003 * 109.58790 * 173.15076 * 30 18 17 51 51 H 1.09007 * 109.58432 * 293.56887 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6122 -0.6615 3.5091 8 7 2.9252 -1.9386 3.4501 9 14 2.7899 0.2703 5.1183 10 1 2.3739 1.6821 4.9213 11 1 1.9297 -0.3590 6.1523 12 1 4.2069 0.2283 5.5607 13 6 2.0400 -0.7214 -1.2492 14 1 1.6783 -1.7496 -1.2493 15 6 1.5303 -0.0005 -2.4992 16 6 2.0126 -0.7402 -3.7491 17 6 3.5443 -0.7372 -3.7800 18 7 4.0438 -1.2973 -2.5169 19 6 4.9181 -2.3231 -2.5188 20 8 5.3233 -2.7763 -1.4694 21 6 5.3919 -2.9069 -3.8248 22 6 6.3713 -4.0491 -3.5474 23 7 6.8315 -4.6171 -4.8170 24 6 6.1477 -5.6466 -5.3787 25 6 6.5503 -6.1840 -6.5539 26 6 7.6910 -5.6844 -7.1977 27 6 8.3800 -4.6536 -6.6290 28 6 7.9312 -4.1156 -5.4106 29 8 8.5380 -3.1928 -4.8909 30 6 3.5676 -0.7219 -1.2517 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 1.1528 35 1 3.2485 -2.3959 4.2422 36 1 1.9126 1.0202 -2.5110 37 1 0.4405 0.0202 -2.4875 38 1 1.6299 -0.2397 -4.6385 39 1 1.6512 -1.7682 -3.7257 40 1 3.9054 0.2848 -3.8948 41 1 3.8941 -1.3463 -4.6136 42 1 4.5373 -3.2883 -4.3836 43 1 5.8919 -2.1337 -4.4082 44 1 7.2259 -3.6674 -2.9887 45 1 5.8717 -4.8224 -2.9637 46 1 5.2707 -6.0382 -4.8847 47 1 5.9955 -6.9998 -6.9932 48 1 8.0205 -6.1106 -8.1337 49 1 9.2609 -4.2549 -7.1100 50 1 3.9328 -1.3209 -0.4174 51 1 3.9308 0.3014 -1.1560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268171125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:12 Heat of formation + Delta-G solvation = -29.387404 kcal Electronic energy + Delta-G solvation = -30861.011004 eV Core-core repulsion = 26760.889891 eV Total energy + Delta-G solvation = -4100.121113 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.64257 -40.14896 -37.92424 -37.14196 -35.47268 -35.31892 -33.00812 -31.78356 -31.52594 -30.15436 -29.73203 -28.21929 -26.02328 -25.04482 -24.10219 -23.63038 -23.00140 -22.30702 -21.03495 -19.58521 -18.85910 -18.06533 -17.59963 -17.18873 -16.84422 -16.37810 -16.20842 -15.68978 -15.39727 -14.87346 -14.85104 -14.46275 -14.42913 -14.21768 -13.78987 -13.60776 -13.46217 -13.13587 -12.85372 -12.77654 -12.71377 -12.54455 -12.34268 -12.26697 -12.07648 -11.98127 -11.46919 -11.34285 -11.11966 -11.00816 -10.85164 -10.71409 -10.61787 -10.47192 -10.25050 -10.17552 -10.13359 -9.86358 -9.62893 -9.51787 -8.87950 -8.46823 -8.29061 -6.90549 -5.70208 -2.99418 0.50440 1.56719 2.28318 2.69116 3.09081 3.37517 3.46998 3.52123 3.54793 4.21220 4.33939 4.44057 4.52951 4.57249 4.62001 4.72173 4.79747 4.87472 4.90483 4.97424 5.00592 5.08430 5.23656 5.35090 5.40848 5.45112 5.59967 5.61503 5.65262 5.68842 5.76496 5.77356 5.80921 5.91177 5.93570 6.00316 6.10472 6.18629 6.19460 6.21940 6.43564 6.47800 6.51382 6.71729 6.74142 6.79803 6.92267 7.10687 7.50878 7.75473 7.78147 8.26087 8.47361 9.58669 10.16164 10.50466 11.52064 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.002366 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.328838 B =11830.108644 C =13065.499200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.180 3.820 3 H 0.047 0.953 4 N -0.724 5.724 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.929 5.929 9 Si 0.903 3.097 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.292 1.292 13 C -0.102 4.102 14 H 0.069 0.931 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.105 3.895 18 N -0.609 5.609 19 C 0.516 3.484 20 O -0.528 6.528 21 C -0.152 4.152 22 C 0.104 3.896 23 N -0.495 5.495 24 C 0.137 3.863 25 C -0.238 4.238 26 C -0.017 4.017 27 C -0.246 4.246 28 C 0.509 3.491 29 O -0.548 6.548 30 C 0.122 3.878 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.103 0.897 46 H 0.163 0.837 47 H 0.144 0.856 48 H 0.133 0.867 49 H 0.147 0.853 50 H 0.108 0.892 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -6.518 -26.942 27.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.069 3.931 3 H 0.065 0.935 4 N -0.365 5.365 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.122 4.122 14 H 0.087 0.913 15 C -0.153 4.153 16 C -0.171 4.171 17 C -0.018 4.018 18 N -0.343 5.343 19 C 0.302 3.698 20 O -0.404 6.404 21 C -0.193 4.193 22 C -0.018 4.018 23 N -0.205 5.205 24 C 0.010 3.990 25 C -0.261 4.261 26 C -0.039 4.039 27 C -0.268 4.268 28 C 0.311 3.689 29 O -0.430 6.430 30 C 0.001 3.999 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.218 0.782 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.118 0.882 44 H 0.130 0.870 45 H 0.121 0.879 46 H 0.180 0.820 47 H 0.162 0.838 48 H 0.151 0.849 49 H 0.164 0.836 50 H 0.126 0.874 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.486 -6.004 -25.835 26.640 hybrid contribution -0.048 0.092 0.747 0.755 sum 2.438 -5.912 -25.088 25.890 Atomic orbital electron populations 1.22480 0.99313 1.00764 0.99880 1.20174 0.91828 0.95274 0.85788 0.93527 1.42452 1.78074 1.10733 1.05285 1.19233 1.36558 0.93805 0.87320 0.91245 1.24737 1.02207 0.95950 0.97997 1.69676 1.50731 1.08603 1.28688 0.86171 0.77306 0.78757 0.84271 1.20643 1.21997 1.21907 1.21676 0.94758 1.00435 0.95355 0.91273 1.21632 1.01078 0.99107 0.93520 1.21918 0.94792 1.01532 0.98905 1.21750 0.94818 0.99356 0.85861 1.48178 1.44187 1.33973 1.07945 1.20192 0.79148 0.79907 0.90527 1.90802 1.56224 1.60107 1.33293 1.21948 1.00250 0.99607 0.97496 1.21783 1.00174 0.96787 0.83045 1.45660 1.24316 1.28654 1.21870 1.22063 0.95662 0.87357 0.93967 1.20660 1.01684 1.06281 0.97516 1.21445 0.92111 0.92329 0.98006 1.22148 1.04926 1.02141 0.97554 1.17231 0.80226 0.84643 0.86783 1.90999 1.55923 1.29849 1.66193 1.21634 0.93833 0.99121 0.85357 0.93639 0.92879 0.94302 0.78211 0.93597 0.91839 0.91166 0.90982 0.91629 0.91272 0.90377 0.88634 0.88231 0.87040 0.87906 0.81997 0.83786 0.84904 0.83567 0.87402 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.14 37.16 0.34 -2.53 16 2 C 0.18 3.44 2.48 -67.93 -0.17 3.27 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 N -0.72 -17.94 4.52 -53.43 -0.24 -18.18 16 5 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 7 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 9 Si 0.90 22.83 29.55 -169.99 -5.02 17.80 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 C -0.10 -1.61 1.96 -90.72 -0.18 -1.79 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 15 C -0.12 -1.35 4.85 -26.69 -0.13 -1.48 16 16 C -0.13 -1.23 6.08 -26.61 -0.16 -1.40 16 17 C 0.11 1.03 6.34 -3.71 -0.02 1.00 16 18 N -0.61 -8.47 2.98 -173.03 -0.52 -8.98 16 19 C 0.52 7.64 7.70 -10.98 -0.08 7.55 16 20 O -0.53 -10.34 15.40 5.56 0.09 -10.25 16 21 C -0.15 -1.57 4.37 -27.89 -0.12 -1.69 16 22 C 0.10 1.12 4.62 -4.04 -0.02 1.10 16 23 N -0.49 -4.70 2.58 -119.77 -0.31 -5.01 16 24 C 0.14 0.83 10.28 -16.84 -0.17 0.66 16 25 C -0.24 -1.22 10.01 -39.87 -0.40 -1.61 16 26 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 27 C -0.25 -2.21 9.99 -39.38 -0.39 -2.60 16 28 C 0.51 6.14 7.41 -15.45 -0.11 6.02 16 29 O -0.55 -8.96 16.64 4.86 0.08 -8.88 16 30 C 0.12 2.08 5.44 -3.93 -0.02 2.06 16 31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16 34 H 0.38 10.35 7.61 -40.82 -0.31 10.04 16 35 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 42 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16 43 H 0.10 1.04 7.94 -51.93 -0.41 0.63 16 44 H 0.11 1.54 7.35 -51.93 -0.38 1.16 16 45 H 0.10 0.99 7.96 -51.93 -0.41 0.58 16 46 H 0.16 0.51 8.03 -52.48 -0.42 0.09 16 47 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 48 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 49 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 50 H 0.11 2.35 6.50 -51.93 -0.34 2.01 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 407.57 15.07 6.14 6.14 Total: -1.00 -36.42 407.57 -9.61 -46.04 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.26 Total: 8.39 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -2.29 Total: 0.86 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.34 Total: -60.10 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.42 -9.61 -46.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.650 kcal (2) G-P(sol) polarization free energy of solvation -36.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds