Wall clock time and date at job start Wed Apr 1 2020 04:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47101 * 2 1 4 4 N 1.46500 * 109.46838 * 119.99435 * 2 1 3 5 5 C 1.36931 * 120.00391 * 274.99924 * 4 2 1 6 6 H 1.08000 * 120.00073 * 0.02562 * 5 4 2 7 7 C 1.38816 * 120.00341 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99832 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00118 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47314 * 119.99926 * 9 7 5 12 12 H 1.48504 * 109.46786 * 240.00042 * 9 7 5 13 13 C 1.52999 * 109.47032 * 239.99464 * 2 1 3 14 14 H 1.08997 * 109.52600 * 299.92008 * 13 2 1 15 15 C 1.53039 * 109.49748 * 60.00386 * 13 2 1 16 16 C 1.53041 * 109.53647 * 181.31675 * 15 13 2 17 17 C 1.53194 * 109.30970 * 298.63046 * 16 15 13 18 18 N 1.46923 * 108.77322 * 54.64020 * 17 16 15 19 19 C 1.34784 * 120.62964 * 126.36706 * 18 17 16 20 20 O 1.21283 * 119.99649 * 179.97438 * 19 18 17 21 21 C 1.50694 * 119.99988 * 359.97438 * 19 18 17 22 22 C 1.53001 * 109.47168 * 179.97438 * 21 19 18 23 23 N 1.46504 * 109.47415 * 179.97438 * 22 21 19 24 24 C 1.35757 * 119.62456 * 269.73142 * 23 22 21 25 25 C 1.35355 * 120.69962 * 179.71674 * 24 23 22 26 26 C 1.40196 * 119.94715 * 0.52995 * 25 24 23 27 27 C 1.36406 * 119.26563 * 359.74407 * 26 25 24 28 28 C 1.34655 * 119.62000 * 90.00158 * 23 22 21 29 29 O 1.22061 * 119.98816 * 359.97438 * 28 23 22 30 30 C 1.46927 * 118.73985 * 306.63925 * 18 17 16 31 31 H 1.09000 * 109.47106 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46970 * 300.00647 * 1 2 3 33 33 H 1.09004 * 109.47046 * 60.00152 * 1 2 3 34 34 H 0.97007 * 119.99979 * 95.00245 * 4 2 1 35 35 H 0.97001 * 119.99986 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.45771 * 61.29617 * 15 13 2 37 37 H 1.08997 * 109.45929 * 301.33204 * 15 13 2 38 38 H 1.08996 * 109.49638 * 178.68503 * 16 15 13 39 39 H 1.08997 * 109.50160 * 58.58619 * 16 15 13 40 40 H 1.08998 * 109.58766 * 294.84948 * 17 16 15 41 41 H 1.09006 * 109.58377 * 174.42601 * 17 16 15 42 42 H 1.08998 * 109.47224 * 299.99701 * 21 19 18 43 43 H 1.09002 * 109.47054 * 60.00213 * 21 19 18 44 44 H 1.09000 * 109.47339 * 299.99895 * 22 21 19 45 45 H 1.09002 * 109.46926 * 60.00175 * 22 21 19 46 46 H 1.08003 * 119.65106 * 359.97438 * 24 23 22 47 47 H 1.07994 * 120.02447 * 180.27607 * 25 24 23 48 48 H 1.07995 * 120.36949 * 179.76725 * 26 25 24 49 49 H 1.07993 * 120.34609 * 180.02562 * 27 26 25 50 50 H 1.09003 * 109.58790 * 173.15076 * 30 18 17 51 51 H 1.09007 * 109.58432 * 293.56887 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1491 -0.0074 2.3758 6 1 1.8919 1.0404 2.4243 7 6 2.6122 -0.6615 3.5091 8 7 2.9252 -1.9386 3.4501 9 14 2.7899 0.2703 5.1183 10 1 2.3739 1.6821 4.9213 11 1 1.9297 -0.3590 6.1523 12 1 4.2069 0.2283 5.5607 13 6 2.0400 -0.7214 -1.2492 14 1 1.6783 -1.7496 -1.2493 15 6 1.5303 -0.0005 -2.4992 16 6 2.0126 -0.7402 -3.7491 17 6 3.5443 -0.7372 -3.7800 18 7 4.0438 -1.2973 -2.5169 19 6 4.9181 -2.3231 -2.5188 20 8 5.3233 -2.7763 -1.4694 21 6 5.3919 -2.9069 -3.8248 22 6 6.3713 -4.0491 -3.5474 23 7 6.8315 -4.6171 -4.8170 24 6 6.1477 -5.6466 -5.3787 25 6 6.5503 -6.1840 -6.5539 26 6 7.6910 -5.6844 -7.1977 27 6 8.3800 -4.6536 -6.6290 28 6 7.9312 -4.1156 -5.4106 29 8 8.5380 -3.1928 -4.8909 30 6 3.5676 -0.7219 -1.2517 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.2490 -1.6317 1.1528 35 1 3.2485 -2.3959 4.2422 36 1 1.9126 1.0202 -2.5110 37 1 0.4405 0.0202 -2.4875 38 1 1.6299 -0.2397 -4.6385 39 1 1.6512 -1.7682 -3.7257 40 1 3.9054 0.2848 -3.8948 41 1 3.8941 -1.3463 -4.6136 42 1 4.5373 -3.2883 -4.3836 43 1 5.8919 -2.1337 -4.4082 44 1 7.2259 -3.6674 -2.9887 45 1 5.8717 -4.8224 -2.9637 46 1 5.2707 -6.0382 -4.8847 47 1 5.9955 -6.9998 -6.9932 48 1 8.0205 -6.1106 -8.1337 49 1 9.2609 -4.2549 -7.1100 50 1 3.9328 -1.3209 -0.4174 51 1 3.9308 0.3014 -1.1560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268171125.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:11 Heat of formation + Delta-G solvation = -53.865745 kcal Electronic energy + Delta-G solvation = -30862.072465 eV Core-core repulsion = 26760.889891 eV Total energy + Delta-G solvation = -4101.182574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.38632 -41.29901 -39.20960 -37.97143 -36.98389 -36.05632 -34.68160 -33.15157 -32.46783 -31.27722 -30.72369 -29.80722 -27.00194 -26.35110 -25.33993 -24.64134 -24.17059 -23.11526 -22.23528 -21.05077 -19.93918 -19.18321 -18.84488 -18.28609 -17.78821 -17.27673 -17.04174 -16.78809 -16.74792 -16.35704 -15.78084 -15.58667 -15.38412 -15.31752 -15.10227 -14.87469 -14.61961 -14.37649 -14.09538 -14.02994 -13.75597 -13.70792 -13.41037 -13.23572 -13.02436 -12.84624 -12.82562 -12.72126 -12.54270 -12.36174 -12.30501 -12.11438 -11.98865 -11.83182 -11.68126 -11.39129 -11.22372 -11.12107 -11.01145 -10.98271 -10.80010 -9.65510 -8.99012 -8.96002 -7.92997 -5.20880 -0.05204 0.94494 1.43363 1.44974 1.49701 1.53157 1.54348 2.04993 2.55155 2.70622 3.40640 3.42206 3.61204 3.63785 3.74771 3.85759 3.88424 3.96214 3.99968 4.11192 4.17690 4.21706 4.24168 4.32016 4.36690 4.45366 4.48773 4.60121 4.63833 4.66868 4.72978 4.78315 4.87247 4.93288 4.94620 5.04257 5.06871 5.10009 5.17891 5.23200 5.28561 5.38343 5.43156 5.49510 5.51752 5.56412 5.64880 5.69325 6.12632 6.28676 6.39025 6.99782 7.10963 7.33941 8.12439 8.33504 9.30704 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.002366 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.328838 B =11830.108644 C =13065.499200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.171 3.829 3 H 0.043 0.957 4 N -0.737 5.737 5 C -0.230 4.230 6 H 0.077 0.923 7 C -0.081 4.081 8 N -0.971 5.971 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.299 1.299 13 C -0.087 4.087 14 H 0.055 0.945 15 C -0.111 4.111 16 C -0.125 4.125 17 C 0.097 3.903 18 N -0.607 5.607 19 C 0.507 3.493 20 O -0.589 6.589 21 C -0.132 4.132 22 C 0.108 3.892 23 N -0.491 5.491 24 C 0.127 3.873 25 C -0.224 4.224 26 C 0.009 3.991 27 C -0.281 4.281 28 C 0.490 3.510 29 O -0.615 6.615 30 C 0.129 3.871 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.081 0.919 34 H 0.368 0.632 35 H 0.247 0.753 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.110 0.890 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.114 0.886 46 H 0.197 0.803 47 H 0.184 0.816 48 H 0.169 0.831 49 H 0.143 0.857 50 H 0.050 0.950 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 -6.885 -31.229 31.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 H 0.061 0.939 4 N -0.377 5.377 5 C -0.362 4.362 6 H 0.094 0.906 7 C -0.273 4.273 8 N -0.622 5.622 9 Si 0.798 3.202 10 H -0.187 1.187 11 H -0.221 1.221 12 H -0.227 1.227 13 C -0.107 4.107 14 H 0.073 0.927 15 C -0.149 4.149 16 C -0.163 4.163 17 C -0.024 4.024 18 N -0.339 5.339 19 C 0.296 3.704 20 O -0.470 6.470 21 C -0.173 4.173 22 C -0.015 4.015 23 N -0.200 5.200 24 C 0.001 3.999 25 C -0.246 4.246 26 C -0.013 4.013 27 C -0.302 4.302 28 C 0.296 3.704 29 O -0.503 6.503 30 C 0.006 3.994 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.200 0.800 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.157 0.843 43 H 0.120 0.880 44 H 0.087 0.913 45 H 0.132 0.868 46 H 0.214 0.786 47 H 0.201 0.799 48 H 0.186 0.814 49 H 0.161 0.839 50 H 0.069 0.931 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.088 -6.343 -30.221 30.880 hybrid contribution 0.680 0.150 1.946 2.067 sum 0.592 -6.193 -28.275 28.951 Atomic orbital electron populations 1.22309 0.97220 1.00696 1.00992 1.20495 0.93141 0.94886 0.85248 0.93854 1.42681 1.78369 1.10159 1.06455 1.19634 1.34216 0.94079 0.88286 0.90560 1.25550 1.03398 0.96864 1.01519 1.69851 1.52941 1.10338 1.29092 0.85137 0.76528 0.78372 0.80172 1.18730 1.22109 1.22687 1.21500 0.93362 0.99820 0.96027 0.92651 1.21632 1.01836 0.99171 0.92218 1.21910 0.93831 1.01757 0.98795 1.22154 0.95587 1.00358 0.84316 1.48276 1.43712 1.33526 1.08388 1.21035 0.78419 0.79601 0.91393 1.90779 1.58299 1.62081 1.35843 1.21845 1.01341 0.99218 0.94848 1.21573 0.98715 0.97445 0.83742 1.45562 1.24017 1.29314 1.21119 1.22776 0.96396 0.86148 0.94595 1.21209 1.00845 1.06074 0.96503 1.21899 0.91022 0.89913 0.98453 1.22103 1.06395 1.04467 0.97250 1.17765 0.80573 0.84419 0.87657 1.90951 1.58216 1.33087 1.68085 1.21242 0.94968 0.97555 0.85621 0.94269 0.94849 0.90031 0.80033 0.94376 0.91106 0.89738 0.87185 0.91416 0.90293 0.87207 0.84325 0.88013 0.91337 0.86795 0.78573 0.79862 0.81362 0.83870 0.93112 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.14 71.98 0.66 -4.46 16 2 C 0.17 6.57 2.48 44.99 0.11 6.68 16 3 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 4 N -0.74 -38.06 4.52 -322.94 -1.46 -39.52 16 5 C -0.23 -13.12 9.93 84.04 0.83 -12.29 16 6 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 7 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 8 N -0.97 -62.87 13.06 21.65 0.28 -62.59 16 9 Si 0.97 48.36 29.55 68.60 2.03 50.39 16 10 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 12 H -0.30 -15.17 7.11 99.48 0.71 -14.46 16 13 C -0.09 -2.72 1.96 -10.86 -0.02 -2.74 16 14 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 15 C -0.11 -2.23 4.85 30.62 0.15 -2.08 16 16 C -0.13 -1.75 6.08 30.67 0.19 -1.56 16 17 C 0.10 1.58 6.34 86.36 0.55 2.12 16 18 N -0.61 -16.80 2.98 -819.72 -2.44 -19.24 16 19 C 0.51 15.54 7.70 87.65 0.67 16.21 16 20 O -0.59 -25.17 15.40 -3.04 -0.05 -25.21 16 21 C -0.13 -2.62 4.37 29.85 0.13 -2.49 16 22 C 0.11 2.41 4.62 86.38 0.40 2.81 16 23 N -0.49 -9.00 2.58 -650.96 -1.68 -10.68 16 24 C 0.13 1.10 10.28 83.42 0.86 1.96 16 25 C -0.22 -1.21 10.01 22.08 0.22 -0.99 16 26 C 0.01 0.07 10.10 22.32 0.23 0.30 16 27 C -0.28 -4.89 9.99 22.40 0.22 -4.67 16 28 C 0.49 12.28 7.41 84.82 0.63 12.90 16 29 O -0.62 -22.06 16.64 -5.51 -0.09 -22.16 16 30 C 0.13 4.63 5.44 86.22 0.47 5.10 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 2.04 6.40 -2.39 -0.02 2.02 16 34 H 0.37 21.13 7.61 -92.70 -0.71 20.43 16 35 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.08 1.51 6.36 -2.39 -0.02 1.50 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.11 1.14 5.93 -2.38 -0.01 1.12 16 42 H 0.14 1.54 7.69 -2.39 -0.02 1.52 16 43 H 0.10 2.05 7.94 -2.39 -0.02 2.03 16 44 H 0.07 2.15 7.35 -2.39 -0.02 2.13 16 45 H 0.11 2.24 7.96 -2.39 -0.02 2.22 16 46 H 0.20 0.30 8.03 -2.91 -0.02 0.28 16 47 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16 48 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 49 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 50 H 0.05 2.42 6.50 -2.39 -0.02 2.40 16 51 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 Total: -1.00 -90.71 407.57 3.57 -87.14 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.22 Total: 29.50 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 6.76 Total: 12.37 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.30 Total: -132.03 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.14 Total: -47.37 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.03 Total: 50.39 kcal Total: -90.71 3.57 -87.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171125.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.272 kcal (2) G-P(sol) polarization free energy of solvation -90.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds