Wall clock time and date at job start Wed Apr 1 2020 04:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 N 1.46508 * 109.46914 * 119.99725 * 2 1 3 5 5 C 1.36945 * 119.99551 * 275.00046 * 4 2 1 6 6 H 1.07994 * 120.00232 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99474 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00363 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47423 * 119.99681 * 9 7 5 12 12 H 1.48500 * 109.47308 * 239.99653 * 9 7 5 13 13 C 1.53000 * 109.47173 * 239.99390 * 2 1 3 14 14 H 1.08998 * 109.49450 * 185.07160 * 13 2 1 15 15 C 1.53029 * 109.49565 * 65.00239 * 13 2 1 16 16 C 1.53050 * 109.54043 * 178.65233 * 15 13 2 17 17 C 1.53194 * 109.31083 * 61.36003 * 16 15 13 18 18 N 1.46923 * 108.77802 * 305.37331 * 17 16 15 19 19 C 1.34776 * 120.62769 * 233.58374 * 18 17 16 20 20 O 1.21280 * 119.99807 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.00040 * 359.97438 * 19 18 17 22 22 C 1.53000 * 109.47045 * 179.97438 * 21 19 18 23 23 N 1.46499 * 109.47280 * 180.02562 * 22 21 19 24 24 C 1.35762 * 119.62429 * 269.98236 * 23 22 21 25 25 C 1.35355 * 120.70427 * 180.02562 * 24 23 22 26 26 C 1.40197 * 119.94515 * 359.97397 * 25 24 23 27 27 C 1.36397 * 119.26403 * 359.74421 * 26 25 24 28 28 C 1.34662 * 119.62692 * 89.99736 * 23 22 21 29 29 O 1.22063 * 119.98236 * 0.02562 * 28 23 22 30 30 C 1.46924 * 118.74316 * 53.85893 * 18 17 16 31 31 H 1.09000 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47284 * 300.00428 * 1 2 3 33 33 H 1.09002 * 109.47476 * 60.00429 * 1 2 3 34 34 H 0.96996 * 120.00398 * 94.99499 * 4 2 1 35 35 H 0.97001 * 120.00332 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46728 * 58.63171 * 15 13 2 37 37 H 1.09009 * 109.46441 * 298.66925 * 15 13 2 38 38 H 1.09003 * 109.49038 * 301.41444 * 16 15 13 39 39 H 1.08992 * 109.53001 * 181.33252 * 16 15 13 40 40 H 1.08994 * 109.58378 * 185.58187 * 17 16 15 41 41 H 1.09004 * 109.58243 * 65.15617 * 17 16 15 42 42 H 1.08997 * 109.46981 * 60.00428 * 21 19 18 43 43 H 1.08995 * 109.47135 * 299.99722 * 21 19 18 44 44 H 1.09001 * 109.47187 * 60.00293 * 22 21 19 45 45 H 1.09000 * 109.47502 * 300.00088 * 22 21 19 46 46 H 1.07996 * 119.64964 * 359.97438 * 24 23 22 47 47 H 1.08000 * 120.02351 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.36385 * 180.02562 * 26 25 24 49 49 H 1.08004 * 120.34781 * 180.25096 * 27 26 25 50 50 H 1.09000 * 109.58465 * 65.92704 * 30 18 17 51 51 H 1.08994 * 109.59199 * 186.35504 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3759 6 1 1.8925 1.0407 2.4242 7 6 2.6122 -0.6615 3.5091 8 7 2.9252 -1.9385 3.4502 9 14 2.7912 0.2707 5.1180 10 1 2.3772 1.6831 4.9204 11 1 1.9308 -0.3577 6.1526 12 1 4.2082 0.2278 5.5599 13 6 2.0400 -0.7214 -1.2492 14 1 3.1262 -0.8009 -1.2053 15 6 1.6355 0.0684 -2.4959 16 6 2.1740 -0.6346 -3.7442 17 6 1.5626 -2.0359 -3.8400 18 7 1.8231 -2.7524 -2.5841 19 6 2.4140 -3.9637 -2.5945 20 8 2.6241 -4.5449 -1.5510 21 6 2.8136 -4.5960 -3.9028 22 6 3.4588 -5.9572 -3.6354 23 7 3.8478 -6.5716 -4.9072 24 6 2.9675 -7.3697 -5.5639 25 6 3.3042 -7.9488 -6.7401 26 6 4.5736 -7.7259 -7.2919 27 6 5.4545 -6.9192 -6.6335 28 6 5.0745 -6.3386 -5.4114 29 8 5.8552 -5.6193 -4.8087 30 6 1.4219 -2.1262 -1.3170 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 2.2489 -1.6317 1.1529 35 1 3.2485 -2.3958 4.2422 36 1 2.0500 1.0748 -2.4387 37 1 0.5484 0.1263 -2.5524 38 1 3.2590 -0.7148 -3.6769 39 1 1.9061 -0.0594 -4.6304 40 1 2.0166 -2.5767 -4.6703 41 1 0.4871 -1.9552 -3.9982 42 1 3.5270 -3.9506 -4.4153 43 1 1.9300 -4.7287 -4.5271 44 1 2.7458 -6.6029 -3.1227 45 1 4.3425 -5.8242 -3.0113 46 1 1.9885 -7.5451 -5.1430 47 1 2.5955 -8.5821 -7.2530 48 1 4.8492 -8.1843 -8.2302 49 1 6.4355 -6.7322 -7.0447 50 1 0.3352 -2.0528 -1.2738 51 1 1.7831 -2.7266 -0.4821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268171131.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:19 Heat of formation + Delta-G solvation = -26.866132 kcal Electronic energy + Delta-G solvation = -30915.858393 eV Core-core repulsion = 26815.846610 eV Total energy + Delta-G solvation = -4100.011783 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64666 -40.20232 -37.98285 -37.14177 -35.46008 -35.33205 -32.99931 -31.89169 -31.48757 -30.14116 -29.67310 -27.84893 -26.22021 -24.88641 -24.33033 -23.84084 -23.15960 -22.38443 -21.13731 -19.32056 -18.61591 -18.10103 -17.61228 -17.18864 -16.86401 -16.38485 -16.21660 -15.68727 -15.45901 -14.87898 -14.80435 -14.56798 -14.43869 -14.08738 -13.93286 -13.68302 -13.55657 -13.05920 -12.87854 -12.77943 -12.70065 -12.56146 -12.45657 -12.28966 -12.07510 -11.87200 -11.54492 -11.46522 -11.13916 -10.99224 -10.83982 -10.62014 -10.48845 -10.43483 -10.22117 -10.20300 -10.17141 -9.88461 -9.66494 -9.49799 -8.86434 -8.46483 -8.29316 -6.89723 -5.68687 -2.98379 0.49911 1.56438 2.27372 2.65208 3.06060 3.37172 3.47404 3.52326 3.55158 4.18912 4.32961 4.41726 4.51544 4.56387 4.62648 4.73189 4.77348 4.89003 4.90232 4.96579 5.01332 5.06670 5.22571 5.33131 5.38625 5.46777 5.59646 5.62595 5.64429 5.65052 5.75939 5.77694 5.83970 5.87586 5.93122 5.97089 6.09000 6.13941 6.18969 6.25609 6.37656 6.40701 6.57410 6.64904 6.77281 6.79343 6.92289 7.14342 7.46104 7.76320 7.78696 8.21939 8.48867 9.59820 10.18050 10.52070 11.53465 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002315 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.859268 B =12094.215172 C =13167.922938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.180 3.820 3 H 0.049 0.951 4 N -0.725 5.725 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.929 5.929 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.104 4.104 14 H 0.074 0.926 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.107 3.893 18 N -0.609 5.609 19 C 0.516 3.484 20 O -0.529 6.529 21 C -0.152 4.152 22 C 0.104 3.896 23 N -0.495 5.495 24 C 0.136 3.864 25 C -0.238 4.238 26 C -0.018 4.018 27 C -0.245 4.245 28 C 0.509 3.491 29 O -0.545 6.545 30 C 0.116 3.884 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.112 0.888 46 H 0.162 0.838 47 H 0.144 0.856 48 H 0.133 0.867 49 H 0.147 0.853 50 H 0.071 0.929 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.813 -9.363 -27.586 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.069 3.931 3 H 0.067 0.933 4 N -0.367 5.367 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.577 5.577 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.124 4.124 14 H 0.093 0.907 15 C -0.152 4.152 16 C -0.174 4.174 17 C -0.016 4.016 18 N -0.342 5.342 19 C 0.302 3.698 20 O -0.406 6.406 21 C -0.193 4.193 22 C -0.018 4.018 23 N -0.206 5.206 24 C 0.009 3.991 25 C -0.261 4.261 26 C -0.040 4.040 27 C -0.266 4.266 28 C 0.311 3.689 29 O -0.427 6.427 30 C -0.005 4.005 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.130 0.870 46 H 0.179 0.821 47 H 0.162 0.838 48 H 0.151 0.849 49 H 0.165 0.835 50 H 0.089 0.911 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.169 -9.066 -26.427 28.248 hybrid contribution 0.059 0.180 0.742 0.766 sum -4.110 -8.886 -25.685 27.488 Atomic orbital electron populations 1.22575 0.99570 1.00831 0.99929 1.20175 0.91792 0.95293 0.85798 0.93335 1.42505 1.78105 1.10809 1.05298 1.19258 1.36563 0.93829 0.87354 0.91209 1.24755 1.02245 0.95967 0.98038 1.69684 1.50726 1.08591 1.28702 0.86158 0.77283 0.78736 0.84245 1.20641 1.21956 1.21946 1.21865 1.01033 0.94237 0.95274 0.90730 1.21604 1.01000 0.99000 0.93564 1.21928 1.01226 0.95299 0.98906 1.21743 1.00569 0.93386 0.85929 1.48173 1.59908 1.17953 1.08212 1.20210 0.77617 0.81395 0.90530 1.90794 1.53918 1.62086 1.33772 1.21950 1.02498 0.97515 0.97353 1.21777 1.03231 0.93503 0.83279 1.45661 1.13960 1.39623 1.21313 1.22039 0.94791 0.89571 0.92728 1.20654 0.99118 1.08343 0.98019 1.21440 0.92312 0.92144 0.98079 1.22157 1.02893 1.04686 0.96900 1.17242 0.80788 0.83486 0.87432 1.91016 1.50066 1.39667 1.61925 1.21963 0.99167 0.93957 0.85457 0.93264 0.92887 0.94350 0.78083 0.93562 0.91586 0.91520 0.91467 0.90944 0.90329 0.91277 0.88116 0.88679 0.87984 0.86963 0.82071 0.83820 0.84907 0.83539 0.91063 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 8.76 37.16 0.33 -2.62 16 2 C 0.18 3.52 2.67 -67.93 -0.18 3.34 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.73 -18.43 5.06 -53.42 -0.27 -18.70 16 5 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 9 Si 0.90 22.96 29.55 -169.99 -5.02 17.94 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 C -0.10 -1.70 2.28 -90.28 -0.21 -1.91 16 14 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 15 C -0.11 -1.39 4.89 -26.69 -0.13 -1.52 16 16 C -0.14 -1.35 6.08 -26.61 -0.16 -1.51 16 17 C 0.11 1.01 6.34 -3.71 -0.02 0.99 16 18 N -0.61 -8.22 2.97 -172.50 -0.51 -8.73 16 19 C 0.52 7.46 7.70 -10.99 -0.08 7.37 16 20 O -0.53 -10.10 15.39 5.56 0.09 -10.02 16 21 C -0.15 -1.54 4.37 -27.88 -0.12 -1.66 16 22 C 0.10 1.10 4.62 -4.04 -0.02 1.08 16 23 N -0.50 -4.63 2.58 -119.77 -0.31 -4.94 16 24 C 0.14 0.78 10.28 -16.84 -0.17 0.61 16 25 C -0.24 -1.16 10.01 -39.87 -0.40 -1.56 16 26 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 27 C -0.24 -2.20 9.99 -39.38 -0.39 -2.60 16 28 C 0.51 6.17 7.41 -15.45 -0.11 6.05 16 29 O -0.55 -9.08 16.64 4.86 0.08 -9.00 16 30 C 0.12 1.90 5.18 -3.48 -0.02 1.88 16 31 H 0.05 0.86 6.23 -51.93 -0.32 0.54 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.04 0.54 6.60 -51.93 -0.34 0.20 16 34 H 0.38 10.59 6.49 -40.82 -0.26 10.32 16 35 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.75 6.63 -51.92 -0.34 0.41 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 1.07 7.69 -51.93 -0.40 0.67 16 43 H 0.09 0.66 7.94 -51.93 -0.41 0.24 16 44 H 0.10 0.92 7.97 -51.93 -0.41 0.51 16 45 H 0.11 1.57 7.34 -51.93 -0.38 1.19 16 46 H 0.16 0.42 8.04 -52.49 -0.42 0.00 16 47 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 48 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 49 H 0.15 1.21 8.06 -52.48 -0.42 0.78 16 50 H 0.07 1.10 6.09 -51.93 -0.32 0.79 16 51 H 0.10 2.08 5.84 -51.93 -0.30 1.78 16 LS Contribution 402.72 15.07 6.07 6.07 Total: -1.00 -37.22 402.72 -9.50 -46.73 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -8.00 Total: 8.96 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.34 Total: 0.05 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.37 Total: -60.73 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.17 Total: -19.01 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -37.22 -9.50 -46.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171131.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.859 kcal (2) G-P(sol) polarization free energy of solvation -37.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds