Wall clock time and date at job start Wed Apr 1 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47101 * 2 1 4 4 N 1.46508 * 109.46914 * 119.99725 * 2 1 3 5 5 C 1.36945 * 119.99551 * 275.00046 * 4 2 1 6 6 H 1.07994 * 120.00232 * 359.97438 * 5 4 2 7 7 C 1.38810 * 119.99474 * 180.02562 * 5 4 2 8 8 N 1.31618 * 120.00363 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47057 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47423 * 119.99681 * 9 7 5 12 12 H 1.48500 * 109.47308 * 239.99653 * 9 7 5 13 13 C 1.53000 * 109.47173 * 239.99390 * 2 1 3 14 14 H 1.08998 * 109.49450 * 185.07160 * 13 2 1 15 15 C 1.53029 * 109.49565 * 65.00239 * 13 2 1 16 16 C 1.53050 * 109.54043 * 178.65233 * 15 13 2 17 17 C 1.53194 * 109.31083 * 61.36003 * 16 15 13 18 18 N 1.46923 * 108.77802 * 305.37331 * 17 16 15 19 19 C 1.34776 * 120.62769 * 233.58374 * 18 17 16 20 20 O 1.21280 * 119.99807 * 179.97438 * 19 18 17 21 21 C 1.50700 * 120.00040 * 359.97438 * 19 18 17 22 22 C 1.53000 * 109.47045 * 179.97438 * 21 19 18 23 23 N 1.46499 * 109.47280 * 180.02562 * 22 21 19 24 24 C 1.35762 * 119.62429 * 269.98236 * 23 22 21 25 25 C 1.35355 * 120.70427 * 180.02562 * 24 23 22 26 26 C 1.40197 * 119.94515 * 359.97397 * 25 24 23 27 27 C 1.36397 * 119.26403 * 359.74421 * 26 25 24 28 28 C 1.34662 * 119.62692 * 89.99736 * 23 22 21 29 29 O 1.22063 * 119.98236 * 0.02562 * 28 23 22 30 30 C 1.46924 * 118.74316 * 53.85893 * 18 17 16 31 31 H 1.09000 * 109.47458 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47284 * 300.00428 * 1 2 3 33 33 H 1.09002 * 109.47476 * 60.00429 * 1 2 3 34 34 H 0.96996 * 120.00398 * 94.99499 * 4 2 1 35 35 H 0.97001 * 120.00332 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.46728 * 58.63171 * 15 13 2 37 37 H 1.09009 * 109.46441 * 298.66925 * 15 13 2 38 38 H 1.09003 * 109.49038 * 301.41444 * 16 15 13 39 39 H 1.08992 * 109.53001 * 181.33252 * 16 15 13 40 40 H 1.08994 * 109.58378 * 185.58187 * 17 16 15 41 41 H 1.09004 * 109.58243 * 65.15617 * 17 16 15 42 42 H 1.08997 * 109.46981 * 60.00428 * 21 19 18 43 43 H 1.08995 * 109.47135 * 299.99722 * 21 19 18 44 44 H 1.09001 * 109.47187 * 60.00293 * 22 21 19 45 45 H 1.09000 * 109.47502 * 300.00088 * 22 21 19 46 46 H 1.07996 * 119.64964 * 359.97438 * 24 23 22 47 47 H 1.08000 * 120.02351 * 179.97438 * 25 24 23 48 48 H 1.08002 * 120.36385 * 180.02562 * 26 25 24 49 49 H 1.08004 * 120.34781 * 180.25096 * 27 26 25 50 50 H 1.09000 * 109.58465 * 65.92704 * 30 18 17 51 51 H 1.08994 * 109.59199 * 186.35504 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1490 -0.0073 2.3759 6 1 1.8925 1.0407 2.4242 7 6 2.6122 -0.6615 3.5091 8 7 2.9252 -1.9385 3.4502 9 14 2.7912 0.2707 5.1180 10 1 2.3772 1.6831 4.9204 11 1 1.9308 -0.3577 6.1526 12 1 4.2082 0.2278 5.5599 13 6 2.0400 -0.7214 -1.2492 14 1 3.1262 -0.8009 -1.2053 15 6 1.6355 0.0684 -2.4959 16 6 2.1740 -0.6346 -3.7442 17 6 1.5626 -2.0359 -3.8400 18 7 1.8231 -2.7524 -2.5841 19 6 2.4140 -3.9637 -2.5945 20 8 2.6241 -4.5449 -1.5510 21 6 2.8136 -4.5960 -3.9028 22 6 3.4588 -5.9572 -3.6354 23 7 3.8478 -6.5716 -4.9072 24 6 2.9675 -7.3697 -5.5639 25 6 3.3042 -7.9488 -6.7401 26 6 4.5736 -7.7259 -7.2919 27 6 5.4545 -6.9192 -6.6335 28 6 5.0745 -6.3386 -5.4114 29 8 5.8552 -5.6193 -4.8087 30 6 1.4219 -2.1262 -1.3170 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 2.2489 -1.6317 1.1529 35 1 3.2485 -2.3958 4.2422 36 1 2.0500 1.0748 -2.4387 37 1 0.5484 0.1263 -2.5524 38 1 3.2590 -0.7148 -3.6769 39 1 1.9061 -0.0594 -4.6304 40 1 2.0166 -2.5767 -4.6703 41 1 0.4871 -1.9552 -3.9982 42 1 3.5270 -3.9506 -4.4153 43 1 1.9300 -4.7287 -4.5271 44 1 2.7458 -6.6029 -3.1227 45 1 4.3425 -5.8242 -3.0113 46 1 1.9885 -7.5451 -5.1430 47 1 2.5955 -8.5821 -7.2530 48 1 4.8492 -8.1843 -8.2302 49 1 6.4355 -6.7322 -7.0447 50 1 0.3352 -2.0528 -1.2738 51 1 1.7831 -2.7266 -0.4821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268171131.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:18 Heat of formation + Delta-G solvation = -52.557888 kcal Electronic energy + Delta-G solvation = -30916.972471 eV Core-core repulsion = 26815.846610 eV Total energy + Delta-G solvation = -4101.125861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.38556 -41.33324 -39.27849 -37.97623 -36.96859 -36.05450 -34.69745 -33.23991 -32.40916 -31.32264 -30.72206 -29.38806 -27.19536 -26.32897 -25.50450 -24.69147 -24.50310 -23.14997 -22.33844 -20.64892 -19.79961 -19.27063 -18.82878 -18.28706 -17.77364 -17.30045 -17.06735 -16.76767 -16.65661 -16.49045 -15.79218 -15.56383 -15.45086 -15.35228 -15.11479 -14.90199 -14.85635 -14.28275 -14.17080 -13.94228 -13.83451 -13.71589 -13.34520 -13.23525 -12.99222 -12.89038 -12.84273 -12.72239 -12.65730 -12.32951 -12.28069 -12.07052 -11.92122 -11.81947 -11.76482 -11.42428 -11.23346 -11.13253 -11.01184 -10.96737 -10.82383 -9.62023 -9.02386 -8.95795 -7.94227 -5.23685 -0.04884 0.94790 1.42857 1.44790 1.47869 1.54671 1.54866 2.05836 2.54266 2.70837 3.38553 3.41797 3.61855 3.63598 3.74814 3.86468 3.88597 3.91829 4.00459 4.08581 4.16135 4.19881 4.23239 4.30736 4.37325 4.40074 4.49184 4.58933 4.61578 4.66830 4.71783 4.74098 4.82201 4.88444 4.90427 5.08847 5.09039 5.10788 5.13183 5.23179 5.23722 5.36582 5.43419 5.43751 5.50066 5.54855 5.68280 5.70113 6.12854 6.27061 6.38082 7.00331 7.10556 7.31747 8.10634 8.31623 9.29482 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.002315 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.859268 B =12094.215172 C =13167.922938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.044 0.956 4 N -0.742 5.742 5 C -0.234 4.234 6 H 0.079 0.921 7 C -0.084 4.084 8 N -0.974 5.974 9 Si 0.974 3.026 10 H -0.262 1.262 11 H -0.294 1.294 12 H -0.297 1.297 13 C -0.093 4.093 14 H 0.036 0.964 15 C -0.107 4.107 16 C -0.132 4.132 17 C 0.100 3.900 18 N -0.607 5.607 19 C 0.506 3.494 20 O -0.589 6.589 21 C -0.133 4.133 22 C 0.107 3.893 23 N -0.491 5.491 24 C 0.128 3.872 25 C -0.225 4.225 26 C 0.009 3.991 27 C -0.282 4.282 28 C 0.489 3.511 29 O -0.617 6.617 30 C 0.125 3.875 31 H 0.045 0.955 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.369 0.631 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.143 0.857 44 H 0.119 0.881 45 H 0.064 0.936 46 H 0.201 0.799 47 H 0.185 0.815 48 H 0.168 0.832 49 H 0.142 0.858 50 H 0.087 0.913 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -9.208 -31.849 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.062 3.938 3 H 0.062 0.938 4 N -0.382 5.382 5 C -0.366 4.366 6 H 0.097 0.903 7 C -0.276 4.276 8 N -0.625 5.625 9 Si 0.803 3.197 10 H -0.186 1.186 11 H -0.221 1.221 12 H -0.225 1.225 13 C -0.113 4.113 14 H 0.055 0.945 15 C -0.145 4.145 16 C -0.170 4.170 17 C -0.021 4.021 18 N -0.339 5.339 19 C 0.295 3.705 20 O -0.470 6.470 21 C -0.173 4.173 22 C -0.015 4.015 23 N -0.200 5.200 24 C 0.003 3.997 25 C -0.247 4.247 26 C -0.012 4.012 27 C -0.304 4.304 28 C 0.295 3.705 29 O -0.505 6.505 30 C 0.002 3.998 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.201 0.799 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.161 0.839 44 H 0.137 0.863 45 H 0.082 0.918 46 H 0.218 0.782 47 H 0.203 0.797 48 H 0.186 0.814 49 H 0.159 0.841 50 H 0.104 0.896 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.582 -8.868 -30.794 32.930 hybrid contribution 1.019 0.080 1.922 2.177 sum -6.563 -8.788 -28.872 30.885 Atomic orbital electron populations 1.22381 0.97018 1.00979 1.01140 1.20493 0.93447 0.94750 0.85070 0.93764 1.42790 1.78511 1.10297 1.06599 1.19697 1.34402 0.94186 0.88311 0.90349 1.25629 1.03283 0.96886 1.01777 1.69879 1.52919 1.10484 1.29214 0.85061 0.76605 0.78297 0.79755 1.18590 1.22104 1.22488 1.21689 0.98550 0.94859 0.96240 0.94509 1.21591 1.02414 0.98523 0.91971 1.21940 1.00001 0.95912 0.99134 1.22152 1.02725 0.92836 0.84356 1.48288 1.59121 1.17819 1.08718 1.21028 0.76640 0.81448 0.91359 1.90771 1.56221 1.63779 1.36234 1.21858 1.04019 0.96431 0.95037 1.21585 1.01510 0.94691 0.83720 1.45567 1.13861 1.39818 1.20760 1.22810 0.95544 0.88405 0.92982 1.21219 0.99025 1.07209 0.97248 1.21900 0.91744 0.89262 0.98334 1.22088 1.04098 1.07445 0.96762 1.17781 0.81146 0.83392 0.88207 1.90965 1.52223 1.43321 1.64000 1.21618 0.99557 0.93070 0.85561 0.93622 0.94791 0.89905 0.79940 0.94307 0.91156 0.89275 0.93446 0.87000 0.87580 0.88230 0.88475 0.83878 0.86304 0.91757 0.78219 0.79735 0.81404 0.84066 0.89552 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 8.76 71.98 0.63 -4.61 16 2 C 0.17 6.79 2.67 44.99 0.12 6.91 16 3 H 0.04 1.79 8.08 -2.39 -0.02 1.77 16 4 N -0.74 -39.57 5.06 -322.93 -1.63 -41.20 16 5 C -0.23 -13.60 9.93 84.03 0.83 -12.77 16 6 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 7 C -0.08 -5.12 5.50 84.86 0.47 -4.65 16 8 N -0.97 -64.25 13.06 21.65 0.28 -63.97 16 9 Si 0.97 48.67 29.55 68.60 2.03 50.69 16 10 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 12 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 13 C -0.09 -3.11 2.28 -10.57 -0.02 -3.14 16 14 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 15 C -0.11 -2.33 4.89 30.62 0.15 -2.18 16 16 C -0.13 -2.21 6.08 30.68 0.19 -2.02 16 17 C 0.10 1.54 6.34 86.36 0.55 2.09 16 18 N -0.61 -16.14 2.97 -818.07 -2.43 -18.56 16 19 C 0.51 15.11 7.70 87.66 0.67 15.79 16 20 O -0.59 -24.53 15.39 -3.03 -0.05 -24.57 16 21 C -0.13 -2.58 4.37 29.85 0.13 -2.45 16 22 C 0.11 2.36 4.62 86.38 0.40 2.76 16 23 N -0.49 -8.89 2.58 -650.97 -1.68 -10.57 16 24 C 0.13 1.00 10.28 83.42 0.86 1.86 16 25 C -0.23 -1.09 10.01 22.08 0.22 -0.87 16 26 C 0.01 0.08 10.10 22.32 0.23 0.30 16 27 C -0.28 -5.06 9.99 22.40 0.22 -4.83 16 28 C 0.49 12.51 7.41 84.82 0.63 13.14 16 29 O -0.62 -22.90 16.64 -5.52 -0.09 -22.99 16 30 C 0.12 4.21 5.18 86.51 0.45 4.66 16 31 H 0.04 1.56 6.23 -2.39 -0.01 1.55 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 2.05 6.60 -2.39 -0.02 2.03 16 34 H 0.37 21.89 6.49 -92.71 -0.60 21.28 16 35 H 0.25 15.89 8.31 -92.71 -0.77 15.12 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.09 1.59 6.63 -2.38 -0.02 1.57 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 1.10 5.93 -2.39 -0.01 1.09 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.10 2.02 7.69 -2.39 -0.02 2.01 16 43 H 0.14 1.38 7.94 -2.39 -0.02 1.36 16 44 H 0.12 2.15 7.97 -2.39 -0.02 2.13 16 45 H 0.06 2.06 7.34 -2.39 -0.02 2.04 16 46 H 0.20 -0.03 8.04 -2.91 -0.02 -0.05 16 47 H 0.19 -0.48 8.06 -2.91 -0.02 -0.51 16 48 H 0.17 0.24 8.06 -2.91 -0.02 0.22 16 49 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 50 H 0.09 2.62 6.09 -2.39 -0.01 2.60 16 51 H 0.05 2.07 5.84 -2.39 -0.01 2.06 16 Total: -1.00 -93.90 402.72 3.48 -90.42 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.33 Total: 30.76 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.72 Total: 10.00 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -5.46 Total: -134.30 kcal Atomic # 8 Polarization: -47.43 SS G_CDS: -0.14 Total: -47.56 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.69 kcal Total: -93.90 3.48 -90.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171131.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.860 kcal (2) G-P(sol) polarization free energy of solvation -93.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds