Wall clock time and date at job start Wed Apr 1 2020 04:42:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47402 * 2 1
4 4 N 1.46495 * 109.46932 * 239.98942 * 2 1 3
5 5 C 1.36940 * 119.99575 * 85.00692 * 4 2 1
6 6 H 1.07997 * 120.00174 * 359.97438 * 5 4 2
7 7 C 1.38815 * 119.99798 * 179.97438 * 5 4 2
8 8 N 1.31620 * 119.99962 * 0.02562 * 7 5 4
9 9 Si 1.86797 * 119.99916 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47293 * 60.00327 * 9 7 5
11 11 H 1.48508 * 109.47117 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.47181 * 300.00103 * 9 7 5
13 13 C 1.53001 * 109.46466 * 119.99572 * 2 1 3
14 14 H 1.08996 * 109.52655 * 60.08308 * 13 2 1
15 15 C 1.53040 * 109.49889 * 299.99610 * 13 2 1
16 16 C 1.53040 * 109.54077 * 178.68736 * 15 13 2
17 17 C 1.53195 * 109.31233 * 61.36216 * 16 15 13
18 18 N 1.46920 * 108.77715 * 305.37008 * 17 16 15
19 19 C 1.34780 * 120.63110 * 233.58100 * 18 17 16
20 20 O 1.21280 * 120.00423 * 179.97438 * 19 18 17
21 21 C 1.50701 * 119.99795 * 0.02562 * 19 18 17
22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18
23 23 N 1.46500 * 109.47473 * 179.97438 * 22 21 19
24 24 C 1.35765 * 119.62146 * 89.99889 * 23 22 21
25 25 C 1.35352 * 120.70002 * 180.02562 * 24 23 22
26 26 C 1.40201 * 119.94915 * 359.97438 * 25 24 23
27 27 C 1.36397 * 119.26019 * 359.97438 * 26 25 24
28 28 C 1.34655 * 119.62464 * 269.73304 * 23 22 21
29 29 O 1.22057 * 119.98740 * 359.96985 * 28 23 22
30 30 C 1.46928 * 118.74133 * 53.85726 * 18 17 16
31 31 H 1.08993 * 109.47598 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47125 * 300.00774 * 1 2 3
33 33 H 1.09006 * 109.47080 * 60.00457 * 1 2 3
34 34 H 0.96997 * 120.00795 * 265.00269 * 4 2 1
35 35 H 0.97004 * 120.00009 * 179.97438 * 8 7 5
36 36 H 1.09004 * 109.45985 * 58.66680 * 15 13 2
37 37 H 1.09007 * 109.44745 * 298.70113 * 15 13 2
38 38 H 1.09001 * 109.49589 * 301.41780 * 16 15 13
39 39 H 1.08994 * 109.52726 * 181.32954 * 16 15 13
40 40 H 1.09002 * 109.59128 * 185.58008 * 17 16 15
41 41 H 1.09004 * 109.58369 * 65.15588 * 17 16 15
42 42 H 1.09002 * 109.47060 * 299.99722 * 21 19 18
43 43 H 1.09001 * 109.47380 * 59.99809 * 21 19 18
44 44 H 1.09002 * 109.47153 * 299.99998 * 22 21 19
45 45 H 1.08998 * 109.47533 * 59.99628 * 22 21 19
46 46 H 1.07995 * 119.65440 * 0.02562 * 24 23 22
47 47 H 1.07999 * 120.02339 * 179.97438 * 25 24 23
48 48 H 1.07992 * 120.36685 * 179.97438 * 26 25 24
49 49 H 1.08002 * 120.34249 * 180.02562 * 27 26 25
50 50 H 1.09005 * 109.58457 * 65.92718 * 30 18 17
51 51 H 1.09001 * 109.58558 * 186.35342 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6908 -1.1960
5 6 2.1491 -0.0078 -2.3757
6 1 1.8920 1.0400 -2.4244
7 6 2.6123 -0.6622 -3.5089
8 7 2.9252 -1.9393 -3.4496
9 14 2.7915 0.2697 -5.1179
10 1 3.7468 1.3920 -4.9362
11 1 3.3003 -0.6490 -6.1680
12 1 1.4694 0.8066 -5.5288
13 6 2.0399 -0.7212 1.2494
14 1 1.6782 -1.7494 1.2496
15 6 1.5301 -0.0001 2.4992
16 6 2.0123 -0.7395 3.7493
17 6 3.5440 -0.7367 3.7804
18 7 4.0436 -1.2969 2.5174
19 6 4.9186 -2.3221 2.5195
20 8 5.3233 -2.7762 1.4702
21 6 5.3931 -2.9051 3.8256
22 6 6.3722 -4.0476 3.5485
23 7 6.8341 -4.6139 4.8182
24 6 6.1477 -5.6391 5.3848
25 6 6.5547 -6.1784 6.5576
26 6 7.6965 -5.6782 7.1992
27 6 8.3852 -4.6489 6.6278
28 6 7.9375 -4.1152 5.4072
29 8 8.5470 -3.1969 4.8828
30 6 3.5761 -0.7144 1.2522
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5140 0.8899
33 1 -0.3633 0.5138 -0.8901
34 1 2.2490 -1.6319 -1.1524
35 1 3.2485 -2.3967 -4.2416
36 1 0.4403 0.0207 2.4874
37 1 1.9127 1.0206 2.5108
38 1 1.6509 -1.7676 3.7260
39 1 1.6296 -0.2393 4.6389
40 1 3.8938 -1.3457 4.6140
41 1 3.9052 0.2853 3.8950
42 1 5.8927 -2.1313 4.4086
43 1 4.5389 -3.2868 4.3849
44 1 5.8723 -4.8212 2.9656
45 1 7.2265 -3.6664 2.9890
46 1 5.2678 -6.0285 4.8946
47 1 6.0002 -6.9935 6.9989
48 1 8.0270 -6.1032 8.1354
49 1 9.2674 -4.2503 7.1067
50 1 3.9399 0.3094 1.1648
51 1 3.9471 -1.3088 0.4171
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001268171132.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:22
Heat of formation + Delta-G solvation = -29.235407 kcal
Electronic energy + Delta-G solvation = -30857.823615 eV
Core-core repulsion = 26757.709093 eV
Total energy + Delta-G solvation = -4100.114522 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.64202 -40.13479 -37.90137 -37.14239 -35.46646 -35.31873 -33.00208 -31.77544
-31.52370 -30.15128 -29.71032 -28.20631 -26.02388 -25.03159 -24.10155 -23.62525
-23.00177 -22.30496 -21.03246 -19.57571 -18.86076 -18.06475 -17.59999 -17.18207
-16.84239 -16.37759 -16.20708 -15.68902 -15.39396 -14.87085 -14.84026 -14.46184
-14.42769 -14.21566 -13.79021 -13.60154 -13.45778 -13.12479 -12.85338 -12.77693
-12.70858 -12.54273 -12.33510 -12.26591 -12.07399 -11.97861 -11.46843 -11.34864
-11.11232 -11.00213 -10.82989 -10.70731 -10.60480 -10.47121 -10.27426 -10.17628
-10.16005 -9.87597 -9.62615 -9.51202 -8.86608 -8.46283 -8.29074 -6.90240
-5.69515 -2.98821 0.50478 1.56750 2.28394 2.69221 3.09338 3.37559
3.47870 3.52241 3.53498 4.21311 4.33945 4.44099 4.53034 4.57267
4.62398 4.72344 4.79834 4.87644 4.90516 4.97645 5.00848 5.08503
5.23356 5.34897 5.40884 5.45257 5.60103 5.61748 5.65293 5.68363
5.76570 5.77793 5.80700 5.91506 5.93578 6.00664 6.10532 6.18924
6.19506 6.22454 6.43655 6.47859 6.51627 6.71521 6.74375 6.79824
6.92506 7.11093 7.50979 7.74855 7.78171 8.26184 8.48128 9.59206
10.16792 10.51119 11.52625
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014007 B = 0.002366 C = 0.002142
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1998.464402 B =11829.850537 C =13067.233639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.179 3.821
3 H 0.047 0.953
4 N -0.724 5.724
5 C -0.239 4.239
6 H 0.068 0.932
7 C -0.012 4.012
8 N -0.929 5.929
9 Si 0.904 3.096
10 H -0.286 1.286
11 H -0.292 1.292
12 H -0.287 1.287
13 C -0.101 4.101
14 H 0.069 0.931
15 C -0.115 4.115
16 C -0.133 4.133
17 C 0.106 3.894
18 N -0.610 5.610
19 C 0.516 3.484
20 O -0.528 6.528
21 C -0.152 4.152
22 C 0.103 3.897
23 N -0.495 5.495
24 C 0.137 3.863
25 C -0.238 4.238
26 C -0.017 4.017
27 C -0.246 4.246
28 C 0.509 3.491
29 O -0.548 6.548
30 C 0.122 3.878
31 H 0.044 0.956
32 H 0.038 0.962
33 H 0.052 0.948
34 H 0.384 0.616
35 H 0.255 0.745
36 H 0.070 0.930
37 H 0.063 0.937
38 H 0.065 0.935
39 H 0.071 0.929
40 H 0.078 0.922
41 H 0.069 0.931
42 H 0.099 0.901
43 H 0.095 0.905
44 H 0.103 0.897
45 H 0.111 0.889
46 H 0.163 0.837
47 H 0.144 0.856
48 H 0.133 0.867
49 H 0.147 0.853
50 H 0.064 0.936
51 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.879 -6.528 26.916 27.760
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.069 3.931
3 H 0.065 0.935
4 N -0.365 5.365
5 C -0.371 4.371
6 H 0.086 0.914
7 C -0.208 4.208
8 N -0.577 5.577
9 Si 0.736 3.264
10 H -0.213 1.213
11 H -0.218 1.218
12 H -0.214 1.214
13 C -0.122 4.122
14 H 0.088 0.912
15 C -0.153 4.153
16 C -0.171 4.171
17 C -0.018 4.018
18 N -0.343 5.343
19 C 0.302 3.698
20 O -0.404 6.404
21 C -0.193 4.193
22 C -0.018 4.018
23 N -0.205 5.205
24 C 0.009 3.991
25 C -0.261 4.261
26 C -0.039 4.039
27 C -0.268 4.268
28 C 0.311 3.689
29 O -0.430 6.430
30 C 0.001 3.999
31 H 0.064 0.936
32 H 0.057 0.943
33 H 0.071 0.929
34 H 0.218 0.782
35 H 0.065 0.935
36 H 0.088 0.912
37 H 0.082 0.918
38 H 0.084 0.916
39 H 0.090 0.910
40 H 0.096 0.904
41 H 0.087 0.913
42 H 0.118 0.882
43 H 0.114 0.886
44 H 0.121 0.879
45 H 0.130 0.870
46 H 0.180 0.820
47 H 0.162 0.838
48 H 0.151 0.849
49 H 0.164 0.836
50 H 0.083 0.917
51 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges 2.528 -6.037 25.798 26.616
hybrid contribution -0.051 0.123 -0.739 0.751
sum 2.477 -5.914 25.059 25.867
Atomic orbital electron populations
1.22482 0.99343 1.00754 0.99867 1.20175 0.91810 0.95280 0.85833
0.93546 1.42433 1.78097 1.10721 1.05260 1.19144 1.36804 0.93759
0.87362 0.91361 1.24733 1.02165 0.95941 0.97983 1.69655 1.50586
1.08593 1.28910 0.86315 0.77662 0.78647 0.83817 1.21321 1.21761
1.21410 1.21830 0.94641 1.00407 0.95286 0.91224 1.21635 1.01064
0.99107 0.93536 1.21916 0.94782 1.01535 0.98892 1.21749 0.94831
0.99337 0.85860 1.48184 1.44287 1.33859 1.07982 1.20193 0.79104
0.79966 0.90525 1.90802 1.56247 1.60071 1.33309 1.21950 1.00250
0.99602 0.97500 1.21781 1.00168 0.96802 0.83052 1.45660 1.24054
1.28944 1.21846 1.22061 0.95691 0.87370 0.93931 1.20661 1.01632
1.06226 0.97620 1.21443 0.92128 0.92303 0.98015 1.22147 1.04921
1.02211 0.97489 1.17229 0.80242 0.84580 0.86825 1.90998 1.55900
1.30051 1.66011 1.21820 0.93825 0.98943 0.85343 0.93649 0.94321
0.92884 0.78205 0.93491 0.91174 0.91849 0.91632 0.90994 0.90379
0.91292 0.88242 0.88640 0.87900 0.87035 0.82001 0.83787 0.84903
0.83567 0.91744 0.87395
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.88 9.14 37.16 0.34 -2.54 16
2 C 0.18 3.44 2.47 -67.93 -0.17 3.27 16
3 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16
4 N -0.72 -17.95 4.52 -53.43 -0.24 -18.19 16
5 C -0.24 -6.65 9.93 -15.06 -0.15 -6.80 16
6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16
7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16
8 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16
9 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16
10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
11 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16
12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
13 C -0.10 -1.60 1.99 -90.27 -0.18 -1.78 16
14 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16
15 C -0.12 -1.36 4.85 -26.69 -0.13 -1.49 16
16 C -0.13 -1.23 6.08 -26.61 -0.16 -1.40 16
17 C 0.11 1.03 6.34 -3.71 -0.02 1.00 16
18 N -0.61 -8.47 2.97 -172.50 -0.51 -8.98 16
19 C 0.52 7.63 7.70 -10.98 -0.08 7.55 16
20 O -0.53 -10.34 15.39 5.56 0.09 -10.25 16
21 C -0.15 -1.57 4.37 -27.88 -0.12 -1.69 16
22 C 0.10 1.12 4.63 -4.04 -0.02 1.10 16
23 N -0.49 -4.70 2.58 -119.78 -0.31 -5.01 16
24 C 0.14 0.83 10.28 -16.84 -0.17 0.66 16
25 C -0.24 -1.22 10.01 -39.87 -0.40 -1.61 16
26 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16
27 C -0.25 -2.21 9.99 -39.38 -0.39 -2.60 16
28 C 0.51 6.14 7.41 -15.45 -0.11 6.03 16
29 O -0.55 -8.96 16.63 4.87 0.08 -8.88 16
30 C 0.12 2.09 5.50 -3.48 -0.02 2.07 16
31 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16
32 H 0.04 0.55 6.40 -51.93 -0.33 0.22 16
33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
34 H 0.38 10.36 7.64 -40.82 -0.31 10.05 16
35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
36 H 0.07 0.79 6.36 -51.93 -0.33 0.46 16
37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16
38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.08 0.58 5.93 -51.93 -0.31 0.28 16
41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
42 H 0.10 1.04 7.94 -51.93 -0.41 0.63 16
43 H 0.10 0.71 7.69 -51.93 -0.40 0.31 16
44 H 0.10 0.99 7.97 -51.93 -0.41 0.58 16
45 H 0.11 1.54 7.33 -51.93 -0.38 1.16 16
46 H 0.16 0.51 8.04 -52.49 -0.42 0.09 16
47 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16
48 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16
49 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16
50 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
51 H 0.11 2.35 6.54 -51.93 -0.34 2.01 16
LS Contribution 407.69 15.07 6.14 6.14
Total: -1.00 -36.39 407.69 -9.61 -46.00
By element:
Atomic # 1 Polarization: 16.75 SS G_CDS: -8.27 Total: 8.49 kcal
Atomic # 6 Polarization: 3.12 SS G_CDS: -2.29 Total: 0.83 kcal
Atomic # 7 Polarization: -59.80 SS G_CDS: -0.34 Total: -60.14 kcal
Atomic # 8 Polarization: -19.30 SS G_CDS: 0.17 Total: -19.13 kcal
Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal
Total LS contribution 6.14 Total: 6.14 kcal
Total: -36.39 -9.61 -46.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268171132.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.761 kcal
(2) G-P(sol) polarization free energy of solvation -36.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.626 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.996 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds