Wall clock time and date at job start Wed Apr 1 2020 04:42:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47402 * 2 1
4 4 N 1.46495 * 109.46932 * 239.98942 * 2 1 3
5 5 C 1.36940 * 119.99575 * 85.00692 * 4 2 1
6 6 H 1.07997 * 120.00174 * 359.97438 * 5 4 2
7 7 C 1.38815 * 119.99798 * 179.97438 * 5 4 2
8 8 N 1.31620 * 119.99962 * 0.02562 * 7 5 4
9 9 Si 1.86797 * 119.99916 * 180.02562 * 7 5 4
10 10 H 1.48495 * 109.47293 * 60.00327 * 9 7 5
11 11 H 1.48508 * 109.47117 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.47181 * 300.00103 * 9 7 5
13 13 C 1.53001 * 109.46466 * 119.99572 * 2 1 3
14 14 H 1.08996 * 109.52655 * 60.08308 * 13 2 1
15 15 C 1.53040 * 109.49889 * 299.99610 * 13 2 1
16 16 C 1.53040 * 109.54077 * 178.68736 * 15 13 2
17 17 C 1.53195 * 109.31233 * 61.36216 * 16 15 13
18 18 N 1.46920 * 108.77715 * 305.37008 * 17 16 15
19 19 C 1.34780 * 120.63110 * 233.58100 * 18 17 16
20 20 O 1.21280 * 120.00423 * 179.97438 * 19 18 17
21 21 C 1.50701 * 119.99795 * 0.02562 * 19 18 17
22 22 C 1.52997 * 109.47212 * 179.97438 * 21 19 18
23 23 N 1.46500 * 109.47473 * 179.97438 * 22 21 19
24 24 C 1.35765 * 119.62146 * 89.99889 * 23 22 21
25 25 C 1.35352 * 120.70002 * 180.02562 * 24 23 22
26 26 C 1.40201 * 119.94915 * 359.97438 * 25 24 23
27 27 C 1.36397 * 119.26019 * 359.97438 * 26 25 24
28 28 C 1.34655 * 119.62464 * 269.73304 * 23 22 21
29 29 O 1.22057 * 119.98740 * 359.96985 * 28 23 22
30 30 C 1.46928 * 118.74133 * 53.85726 * 18 17 16
31 31 H 1.08993 * 109.47598 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.47125 * 300.00774 * 1 2 3
33 33 H 1.09006 * 109.47080 * 60.00457 * 1 2 3
34 34 H 0.96997 * 120.00795 * 265.00269 * 4 2 1
35 35 H 0.97004 * 120.00009 * 179.97438 * 8 7 5
36 36 H 1.09004 * 109.45985 * 58.66680 * 15 13 2
37 37 H 1.09007 * 109.44745 * 298.70113 * 15 13 2
38 38 H 1.09001 * 109.49589 * 301.41780 * 16 15 13
39 39 H 1.08994 * 109.52726 * 181.32954 * 16 15 13
40 40 H 1.09002 * 109.59128 * 185.58008 * 17 16 15
41 41 H 1.09004 * 109.58369 * 65.15588 * 17 16 15
42 42 H 1.09002 * 109.47060 * 299.99722 * 21 19 18
43 43 H 1.09001 * 109.47380 * 59.99809 * 21 19 18
44 44 H 1.09002 * 109.47153 * 299.99998 * 22 21 19
45 45 H 1.08998 * 109.47533 * 59.99628 * 22 21 19
46 46 H 1.07995 * 119.65440 * 0.02562 * 24 23 22
47 47 H 1.07999 * 120.02339 * 179.97438 * 25 24 23
48 48 H 1.07992 * 120.36685 * 179.97438 * 26 25 24
49 49 H 1.08002 * 120.34249 * 180.02562 * 27 26 25
50 50 H 1.09005 * 109.58457 * 65.92718 * 30 18 17
51 51 H 1.09001 * 109.58558 * 186.35342 * 30 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 7 2.0183 -0.6908 -1.1960
5 6 2.1491 -0.0078 -2.3757
6 1 1.8920 1.0400 -2.4244
7 6 2.6123 -0.6622 -3.5089
8 7 2.9252 -1.9393 -3.4496
9 14 2.7915 0.2697 -5.1179
10 1 3.7468 1.3920 -4.9362
11 1 3.3003 -0.6490 -6.1680
12 1 1.4694 0.8066 -5.5288
13 6 2.0399 -0.7212 1.2494
14 1 1.6782 -1.7494 1.2496
15 6 1.5301 -0.0001 2.4992
16 6 2.0123 -0.7395 3.7493
17 6 3.5440 -0.7367 3.7804
18 7 4.0436 -1.2969 2.5174
19 6 4.9186 -2.3221 2.5195
20 8 5.3233 -2.7762 1.4702
21 6 5.3931 -2.9051 3.8256
22 6 6.3722 -4.0476 3.5485
23 7 6.8341 -4.6139 4.8182
24 6 6.1477 -5.6391 5.3848
25 6 6.5547 -6.1784 6.5576
26 6 7.6965 -5.6782 7.1992
27 6 8.3852 -4.6489 6.6278
28 6 7.9375 -4.1152 5.4072
29 8 8.5470 -3.1969 4.8828
30 6 3.5761 -0.7144 1.2522
31 1 -0.3634 -1.0276 0.0005
32 1 -0.3633 0.5140 0.8899
33 1 -0.3633 0.5138 -0.8901
34 1 2.2490 -1.6319 -1.1524
35 1 3.2485 -2.3967 -4.2416
36 1 0.4403 0.0207 2.4874
37 1 1.9127 1.0206 2.5108
38 1 1.6509 -1.7676 3.7260
39 1 1.6296 -0.2393 4.6389
40 1 3.8938 -1.3457 4.6140
41 1 3.9052 0.2853 3.8950
42 1 5.8927 -2.1313 4.4086
43 1 4.5389 -3.2868 4.3849
44 1 5.8723 -4.8212 2.9656
45 1 7.2265 -3.6664 2.9890
46 1 5.2678 -6.0285 4.8946
47 1 6.0002 -6.9935 6.9989
48 1 8.0270 -6.1032 8.1354
49 1 9.2674 -4.2503 7.1067
50 1 3.9399 0.3094 1.1648
51 1 3.9471 -1.3088 0.4171
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001268171132.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:21
Heat of formation + Delta-G solvation = -53.669523 kcal
Electronic energy + Delta-G solvation = -30858.883158 eV
Core-core repulsion = 26757.709093 eV
Total energy + Delta-G solvation = -4101.174065 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.38571 -41.28401 -39.18607 -37.97228 -36.97910 -36.05638 -34.67430 -33.15008
-32.46022 -31.25723 -30.72393 -29.79100 -27.00193 -26.34310 -25.33174 -24.63832
-24.17536 -23.11301 -22.23283 -21.04333 -19.94005 -19.17604 -18.84354 -18.28651
-17.78660 -17.27570 -17.03957 -16.78180 -16.74604 -16.35331 -15.77145 -15.59055
-15.38107 -15.31441 -15.10099 -14.87179 -14.61222 -14.36506 -14.09024 -14.03355
-13.75512 -13.70515 -13.40649 -13.23576 -13.01493 -12.84447 -12.76542 -12.71580
-12.54131 -12.37288 -12.31349 -12.18498 -11.99948 -11.82464 -11.67885 -11.39327
-11.22285 -11.12124 -11.01184 -10.95828 -10.79687 -9.64986 -8.98665 -8.96032
-7.92394 -5.20389 -0.05181 0.94498 1.43451 1.47048 1.49777 1.52782
1.53366 2.05331 2.55649 2.70639 3.40789 3.42296 3.61308 3.63795
3.75068 3.85999 3.88612 3.95898 3.99942 4.11347 4.17907 4.21767
4.23832 4.31893 4.36750 4.45226 4.48768 4.60129 4.63941 4.66913
4.73104 4.78483 4.87481 4.93142 4.94654 5.04079 5.06991 5.10042
5.17950 5.23220 5.28635 5.38214 5.43149 5.49393 5.51816 5.56145
5.64921 5.69343 6.12625 6.28961 6.39204 6.99788 7.11132 7.34287
8.13021 8.34096 9.30911
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014007 B = 0.002366 C = 0.002142
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1998.464402 B =11829.850537 C =13067.233639
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.170 3.830
3 H 0.043 0.957
4 N -0.737 5.737
5 C -0.233 4.233
6 H 0.076 0.924
7 C -0.081 4.081
8 N -0.971 5.971
9 Si 0.969 3.031
10 H -0.280 1.280
11 H -0.299 1.299
12 H -0.275 1.275
13 C -0.086 4.086
14 H 0.055 0.945
15 C -0.111 4.111
16 C -0.125 4.125
17 C 0.097 3.903
18 N -0.607 5.607
19 C 0.507 3.493
20 O -0.590 6.590
21 C -0.132 4.132
22 C 0.108 3.892
23 N -0.491 5.491
24 C 0.127 3.873
25 C -0.224 4.224
26 C 0.009 3.991
27 C -0.281 4.281
28 C 0.490 3.510
29 O -0.615 6.615
30 C 0.129 3.871
31 H 0.038 0.962
32 H 0.081 0.919
33 H 0.032 0.968
34 H 0.368 0.632
35 H 0.248 0.752
36 H 0.084 0.916
37 H 0.070 0.930
38 H 0.067 0.933
39 H 0.110 0.890
40 H 0.110 0.890
41 H 0.079 0.921
42 H 0.102 0.898
43 H 0.139 0.861
44 H 0.114 0.886
45 H 0.068 0.932
46 H 0.197 0.803
47 H 0.184 0.816
48 H 0.169 0.831
49 H 0.143 0.857
50 H 0.058 0.942
51 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.606 -6.909 31.182 31.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C 0.062 3.938
3 H 0.061 0.939
4 N -0.376 5.376
5 C -0.365 4.365
6 H 0.094 0.906
7 C -0.273 4.273
8 N -0.622 5.622
9 Si 0.798 3.202
10 H -0.207 1.207
11 H -0.226 1.226
12 H -0.201 1.201
13 C -0.106 4.106
14 H 0.074 0.926
15 C -0.149 4.149
16 C -0.163 4.163
17 C -0.024 4.024
18 N -0.339 5.339
19 C 0.295 3.705
20 O -0.470 6.470
21 C -0.173 4.173
22 C -0.015 4.015
23 N -0.200 5.200
24 C 0.001 3.999
25 C -0.246 4.246
26 C -0.013 4.013
27 C -0.302 4.302
28 C 0.296 3.704
29 O -0.503 6.503
30 C 0.006 3.994
31 H 0.057 0.943
32 H 0.100 0.900
33 H 0.051 0.949
34 H 0.200 0.800
35 H 0.056 0.944
36 H 0.102 0.898
37 H 0.089 0.911
38 H 0.086 0.914
39 H 0.128 0.872
40 H 0.128 0.872
41 H 0.097 0.903
42 H 0.120 0.880
43 H 0.157 0.843
44 H 0.132 0.868
45 H 0.087 0.913
46 H 0.214 0.786
47 H 0.201 0.799
48 H 0.186 0.814
49 H 0.161 0.839
50 H 0.076 0.924
51 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -0.032 -6.391 30.163 30.832
hybrid contribution 0.670 0.187 -1.932 2.053
sum 0.639 -6.203 28.231 28.912
Atomic orbital electron populations
1.22311 0.97264 1.00682 1.00967 1.20496 0.93111 0.94894 0.85301
0.93876 1.42661 1.78407 1.10144 1.06432 1.19564 1.34516 0.94079
0.88341 0.90615 1.25552 1.03325 0.96849 1.01530 1.69839 1.52800
1.10327 1.29245 0.85271 0.77990 0.77250 0.79648 1.20665 1.22561
1.20108 1.21654 0.93248 0.99784 0.95954 0.92610 1.21634 1.01815
0.99174 0.92242 1.21908 0.93831 1.01756 0.98777 1.22153 0.95589
1.00344 0.84319 1.48283 1.43814 1.33404 1.08423 1.21036 0.78375
0.79662 0.91392 1.90778 1.58323 1.62046 1.35861 1.21847 1.01339
0.99216 0.94854 1.21571 0.98707 0.97461 0.83746 1.45562 1.23754
1.29592 1.21107 1.22775 0.96437 0.86162 0.94539 1.21210 1.00797
1.06019 0.96607 1.21897 0.91041 0.89883 0.98463 1.22101 1.06390
1.04547 0.97174 1.17764 0.80590 0.84358 0.87696 1.90950 1.58188
1.33304 1.67903 1.21429 0.94952 0.97436 0.85598 0.94280 0.90044
0.94880 0.80035 0.94356 0.89755 0.91114 0.91421 0.87194 0.87201
0.90308 0.88009 0.84326 0.86799 0.91340 0.78573 0.79860 0.81359
0.83871 0.92391 0.93109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.14 9.14 71.98 0.66 -4.48 16
2 C 0.17 6.57 2.47 44.99 0.11 6.68 16
3 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16
4 N -0.74 -38.12 4.52 -322.95 -1.46 -39.58 16
5 C -0.23 -13.31 9.93 84.03 0.83 -12.47 16
6 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16
7 C -0.08 -4.84 5.50 84.86 0.47 -4.38 16
8 N -0.97 -62.89 13.06 21.65 0.28 -62.61 16
9 Si 0.97 48.34 29.55 68.60 2.03 50.36 16
10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16
11 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16
12 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
13 C -0.09 -2.70 1.99 -10.57 -0.02 -2.72 16
14 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16
15 C -0.11 -2.24 4.85 30.62 0.15 -2.09 16
16 C -0.12 -1.75 6.08 30.67 0.19 -1.56 16
17 C 0.10 1.58 6.34 86.36 0.55 2.12 16
18 N -0.61 -16.80 2.97 -818.04 -2.43 -19.23 16
19 C 0.51 15.53 7.70 87.66 0.67 16.20 16
20 O -0.59 -25.17 15.39 -3.03 -0.05 -25.21 16
21 C -0.13 -2.62 4.37 29.85 0.13 -2.49 16
22 C 0.11 2.41 4.63 86.38 0.40 2.81 16
23 N -0.49 -9.00 2.58 -650.99 -1.68 -10.69 16
24 C 0.13 1.10 10.28 83.42 0.86 1.96 16
25 C -0.22 -1.21 10.01 22.08 0.22 -0.99 16
26 C 0.01 0.07 10.10 22.32 0.23 0.30 16
27 C -0.28 -4.89 9.99 22.40 0.22 -4.67 16
28 C 0.49 12.29 7.41 84.82 0.63 12.91 16
29 O -0.62 -22.09 16.63 -5.50 -0.09 -22.18 16
30 C 0.13 4.62 5.50 86.51 0.48 5.10 16
31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
32 H 0.08 2.04 6.40 -2.39 -0.02 2.03 16
33 H 0.03 1.22 8.14 -2.38 -0.02 1.21 16
34 H 0.37 21.16 7.64 -92.71 -0.71 20.45 16
35 H 0.25 15.69 8.31 -92.71 -0.77 14.92 16
36 H 0.08 1.51 6.36 -2.38 -0.02 1.50 16
37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16
38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
39 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.11 1.14 5.93 -2.39 -0.01 1.12 16
41 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16
42 H 0.10 2.04 7.94 -2.39 -0.02 2.02 16
43 H 0.14 1.53 7.69 -2.39 -0.02 1.52 16
44 H 0.11 2.24 7.97 -2.39 -0.02 2.22 16
45 H 0.07 2.15 7.33 -2.39 -0.02 2.13 16
46 H 0.20 0.30 8.04 -2.91 -0.02 0.28 16
47 H 0.18 -0.33 8.06 -2.91 -0.02 -0.35 16
48 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16
49 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16
50 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16
51 H 0.05 2.42 6.54 -2.39 -0.02 2.40 16
Total: -1.00 -90.65 407.69 3.59 -87.06
By element:
Atomic # 1 Polarization: 29.63 SS G_CDS: 0.22 Total: 29.84 kcal
Atomic # 6 Polarization: 5.46 SS G_CDS: 6.77 Total: 12.23 kcal
Atomic # 7 Polarization: -126.82 SS G_CDS: -5.29 Total: -132.11 kcal
Atomic # 8 Polarization: -47.25 SS G_CDS: -0.14 Total: -47.39 kcal
Atomic # 14 Polarization: 48.34 SS G_CDS: 2.03 Total: 50.36 kcal
Total: -90.65 3.59 -87.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001268171132.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.394 kcal
(2) G-P(sol) polarization free energy of solvation -90.651 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.256 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.064 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds