Wall clock time and date at job start Wed Apr 1 2020 04:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 5 5 N 1.46899 * 109.47035 * 184.99927 * 4 2 1 6 6 C 1.46898 * 110.99945 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47042 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00108 * 180.02562 * 7 6 5 10 10 C 1.37089 * 120.00242 * 179.97438 * 9 7 6 11 11 H 1.08007 * 120.00319 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00362 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00006 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00168 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47164 * 60.00524 * 14 12 10 16 16 H 1.48498 * 109.46908 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47538 * 300.00226 * 14 12 10 18 18 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 19 19 C 1.34774 * 119.99544 * 274.99692 * 18 2 1 20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 2 21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.47238 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.47192 * 54.99616 * 22 21 19 24 24 C 1.53000 * 109.47060 * 294.99946 * 22 21 19 25 25 C 1.50695 * 109.46942 * 174.99721 * 22 21 19 26 26 C 1.38240 * 120.00183 * 59.72768 * 25 22 21 27 27 C 1.38230 * 120.00121 * 179.80668 * 26 25 22 28 28 C 1.38238 * 119.99969 * 0.39838 * 27 26 25 29 29 C 1.38233 * 119.99840 * 359.85454 * 28 27 26 30 30 C 1.38231 * 120.00064 * 359.95480 * 29 28 27 31 31 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 32 32 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 33 33 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46565 * 305.00038 * 4 2 1 35 35 H 1.08994 * 109.47172 * 64.99388 * 4 2 1 36 36 H 1.00895 * 110.99611 * 303.95462 * 5 4 2 37 37 H 1.09001 * 109.46802 * 299.99952 * 6 5 4 38 38 H 1.08994 * 109.47244 * 59.99843 * 6 5 4 39 39 H 0.97003 * 120.00033 * 359.97438 * 9 7 6 40 40 H 0.96992 * 120.00491 * 179.97438 * 13 12 10 41 41 H 0.96994 * 120.00700 * 94.99812 * 18 2 1 42 42 H 1.09001 * 109.46953 * 299.99667 * 21 19 18 43 43 H 1.09000 * 109.47318 * 59.99264 * 21 19 18 44 44 H 1.09000 * 109.47227 * 59.99725 * 24 22 21 45 45 H 1.09004 * 109.47014 * 180.02562 * 24 22 21 46 46 H 1.09006 * 109.46717 * 300.00177 * 24 22 21 47 47 H 1.07995 * 119.99349 * 359.97438 * 26 25 22 48 48 H 1.08003 * 119.99999 * 180.22856 * 27 26 25 49 49 H 1.07997 * 120.00146 * 179.83300 * 28 27 26 50 50 H 1.08004 * 119.99586 * 179.97438 * 29 28 27 51 51 H 1.08003 * 119.99786 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2495 5 7 3.5040 -0.8266 -1.1907 6 6 4.0302 -1.5156 -2.3766 7 6 5.5315 -1.6041 -2.2812 8 8 6.1067 -1.1385 -1.3202 9 7 6.2353 -2.1997 -3.2643 10 6 7.6011 -2.2797 -3.1779 11 1 8.1133 -1.8651 -2.3221 12 6 8.3266 -2.8942 -4.1912 13 7 7.7035 -3.3991 -5.2322 14 14 10.1877 -3.0026 -4.0737 15 1 10.5634 -3.7607 -2.8532 16 1 10.7196 -3.7000 -5.2720 17 1 10.7598 -1.6342 -4.0021 18 7 2.0184 -0.6908 1.1960 19 6 2.1472 -0.0185 2.3570 20 8 1.8583 1.1581 2.4118 21 6 2.6501 -0.7289 3.5873 22 6 2.7009 0.2539 4.7588 23 1 1.7208 0.7119 4.8915 24 6 3.7369 1.3415 4.4675 25 6 3.0857 -0.4826 6.0159 26 6 4.2934 -1.1519 6.0828 27 6 4.6481 -1.8241 7.2374 28 6 3.7914 -1.8340 8.3223 29 6 2.5814 -1.1692 8.2536 30 6 2.2285 -0.4936 7.1004 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6052 -1.7197 -1.2954 35 1 1.7515 -0.1581 -2.1370 36 1 3.9279 0.0826 -1.0826 37 1 3.6093 -2.5197 -2.4299 38 1 3.7555 -0.9585 -3.2722 39 1 5.7753 -2.5717 -4.0331 40 1 8.2099 -3.8278 -5.9397 41 1 2.2491 -1.6319 1.1524 42 1 1.9779 -1.5512 3.8323 43 1 3.6494 -1.1208 3.3976 44 1 3.4586 1.8741 3.5581 45 1 3.7734 2.0414 5.3023 46 1 4.7170 0.8833 4.3346 47 1 4.9609 -1.1473 5.2339 48 1 5.5933 -2.3439 7.2909 49 1 4.0673 -2.3615 9.2234 50 1 1.9120 -1.1773 9.1011 51 1 1.2829 0.0255 7.0465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268672730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:00 Heat of formation + Delta-G solvation = -65.334129 kcal Electronic energy + Delta-G solvation = -29565.398129 eV Core-core repulsion = 25463.718248 eV Total energy + Delta-G solvation = -4101.679880 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.23911 -39.32413 -38.32725 -36.82051 -35.08319 -34.25597 -33.65304 -31.39326 -31.17646 -31.08388 -29.80520 -27.69426 -27.61010 -25.04152 -23.86642 -23.24512 -22.73834 -21.60886 -20.58495 -19.84664 -19.24583 -17.91755 -17.47461 -16.75190 -16.60487 -15.86479 -15.72114 -15.27562 -15.16102 -14.90388 -14.58916 -14.49074 -14.11122 -13.98619 -13.77386 -13.71448 -13.50229 -13.34103 -13.20832 -12.88882 -12.63698 -12.57537 -12.34398 -12.07299 -11.91785 -11.72752 -11.54963 -11.49464 -11.48543 -11.28541 -11.03677 -10.99436 -10.90737 -10.76783 -10.46026 -10.23484 -9.68584 -9.52182 -9.10696 -8.98584 -8.88031 -8.50393 -8.12555 -7.98520 -6.43850 -3.84764 1.16338 1.21405 2.71779 3.18534 3.20771 3.24419 3.28783 3.61013 3.88189 4.04130 4.27046 4.49583 4.57172 4.75936 4.81172 4.83569 4.94034 4.95699 5.03791 5.09329 5.11100 5.21739 5.28325 5.32211 5.35236 5.37157 5.44232 5.55633 5.57480 5.59801 5.64053 5.75656 5.81236 5.84838 5.89740 5.92945 5.96713 6.05043 6.07355 6.22970 6.25475 6.32096 6.37093 6.50103 6.58478 6.82114 7.12528 7.52875 7.57001 7.61140 8.03653 8.31912 8.58788 9.15590 9.51797 10.03204 10.73744 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.002130 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.865252 B =13144.442142 C =15528.704456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.583 6.583 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.708 5.708 19 C 0.518 3.482 20 O -0.547 6.547 21 C -0.135 4.135 22 C -0.033 4.033 23 H 0.084 0.916 24 C -0.150 4.150 25 C -0.074 4.074 26 C -0.113 4.113 27 C -0.118 4.118 28 C -0.128 4.128 29 C -0.121 4.121 30 C -0.118 4.118 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.351 0.649 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.405 0.595 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.118 0.882 50 H 0.119 0.881 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.467 2.714 18.226 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.083 4.083 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.359 5.359 19 C 0.304 3.696 20 O -0.425 6.425 21 C -0.175 4.175 22 C -0.052 4.052 23 H 0.102 0.898 24 C -0.207 4.207 25 C -0.074 4.074 26 C -0.131 4.131 27 C -0.136 4.136 28 C -0.146 4.146 29 C -0.139 4.139 30 C -0.136 4.136 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.240 0.760 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.198 3.200 19.097 24.616 hybrid contribution 0.692 -0.292 -1.283 1.487 sum -14.506 2.908 17.814 23.157 Atomic orbital electron populations 1.22133 0.95119 1.02141 1.02535 1.20915 0.93481 0.97478 0.84156 0.89650 1.22316 0.89529 1.00668 0.95737 1.60055 1.03037 1.26872 1.39923 1.21676 0.95319 0.99838 0.91382 1.19798 0.88004 0.84636 0.85046 1.90528 1.71101 1.51825 1.33234 1.41856 1.07393 1.50925 1.19811 1.19645 0.81508 1.35225 1.06559 0.87996 1.25266 1.00715 0.96737 0.95229 1.69598 1.36810 1.38493 1.09407 0.85915 0.82101 0.78602 0.77592 1.19877 1.20973 1.19906 1.45864 1.66669 1.14440 1.08942 1.20555 0.77095 0.87260 0.84647 1.90643 1.50625 1.16011 1.85264 1.21756 1.03731 0.99282 0.92736 1.19861 1.00928 0.94509 0.89900 0.89795 1.21968 0.97727 0.98039 1.02932 1.19942 0.94494 0.97531 0.95458 1.21103 0.96422 0.97340 0.98234 1.21182 0.99634 0.99350 0.93443 1.21140 0.94705 1.00048 0.98675 1.21122 0.96897 0.97996 0.97889 1.21082 0.99466 0.99848 0.93187 0.91926 0.91720 0.92389 0.90510 0.93987 0.82985 0.89619 0.93874 0.77477 0.91808 0.75986 0.89063 0.88358 0.90101 0.92983 0.92866 0.85801 0.86073 0.86350 0.86294 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.09 16 2 C 0.15 1.56 2.81 -67.93 -0.19 1.37 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 4 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 5 N -0.67 -9.93 5.85 -115.06 -0.67 -10.60 16 6 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 7 C 0.44 10.12 7.82 -10.99 -0.09 10.03 16 8 O -0.58 -15.52 15.78 5.55 0.09 -15.43 16 9 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 10 C -0.30 -8.28 9.68 -14.94 -0.14 -8.43 16 11 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 14 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 17 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 18 N -0.71 -7.72 4.80 -53.80 -0.26 -7.98 16 19 C 0.52 6.23 7.51 -10.98 -0.08 6.15 16 20 O -0.55 -8.15 13.63 5.56 0.08 -8.07 16 21 C -0.14 -1.32 4.91 -27.88 -0.14 -1.46 16 22 C -0.03 -0.34 2.21 -91.78 -0.20 -0.54 16 23 H 0.08 0.89 7.69 -51.93 -0.40 0.49 16 24 C -0.15 -1.69 8.75 37.16 0.33 -1.36 16 25 C -0.07 -0.72 4.78 -104.63 -0.50 -1.22 16 26 C -0.11 -1.10 8.76 -39.58 -0.35 -1.45 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.13 -1.07 10.05 -39.58 -0.40 -1.46 16 29 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16 30 C -0.12 -1.06 9.67 -39.59 -0.38 -1.44 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.35 5.76 8.43 -39.29 -0.33 5.43 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.41 4.04 8.60 -40.82 -0.35 3.69 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.10 0.96 7.56 -51.93 -0.39 0.57 16 44 H 0.08 1.08 5.95 -51.93 -0.31 0.77 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.05 0.59 7.41 -51.93 -0.38 0.20 16 47 H 0.12 1.15 7.16 -52.49 -0.38 0.78 16 48 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 51 H 0.12 0.92 7.95 -52.48 -0.42 0.50 16 LS Contribution 421.85 15.07 6.36 6.36 Total: -1.00 -32.27 421.85 -9.77 -42.03 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -8.26 Total: 17.43 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.74 Total: -1.97 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.27 Total: -56.26 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.16 Total: -23.50 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.27 -9.77 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268672730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.303 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds