Wall clock time and date at job start Wed Apr 1 2020 04:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 C 1.53010 * 109.46752 * 240.00884 * 2 1 3 5 5 N 1.46899 * 109.47035 * 184.99927 * 4 2 1 6 6 C 1.46898 * 110.99945 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47042 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00108 * 180.02562 * 7 6 5 10 10 C 1.37089 * 120.00242 * 179.97438 * 9 7 6 11 11 H 1.08007 * 120.00319 * 359.97438 * 10 9 7 12 12 C 1.38953 * 120.00362 * 179.97438 * 10 9 7 13 13 N 1.31411 * 120.00006 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00168 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47164 * 60.00524 * 14 12 10 16 16 H 1.48498 * 109.46908 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47538 * 300.00226 * 14 12 10 18 18 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 19 19 C 1.34774 * 119.99544 * 274.99692 * 18 2 1 20 20 O 1.21279 * 120.00472 * 0.02562 * 19 18 2 21 21 C 1.50706 * 120.00020 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.47238 * 180.02562 * 21 19 18 23 23 H 1.08998 * 109.47192 * 54.99616 * 22 21 19 24 24 C 1.53000 * 109.47060 * 294.99946 * 22 21 19 25 25 C 1.50695 * 109.46942 * 174.99721 * 22 21 19 26 26 C 1.38240 * 120.00183 * 59.72768 * 25 22 21 27 27 C 1.38230 * 120.00121 * 179.80668 * 26 25 22 28 28 C 1.38238 * 119.99969 * 0.39838 * 27 26 25 29 29 C 1.38233 * 119.99840 * 359.85454 * 28 27 26 30 30 C 1.38231 * 120.00064 * 359.95480 * 29 28 27 31 31 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 32 32 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 33 33 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.46565 * 305.00038 * 4 2 1 35 35 H 1.08994 * 109.47172 * 64.99388 * 4 2 1 36 36 H 1.00895 * 110.99611 * 303.95462 * 5 4 2 37 37 H 1.09001 * 109.46802 * 299.99952 * 6 5 4 38 38 H 1.08994 * 109.47244 * 59.99843 * 6 5 4 39 39 H 0.97003 * 120.00033 * 359.97438 * 9 7 6 40 40 H 0.96992 * 120.00491 * 179.97438 * 13 12 10 41 41 H 0.96994 * 120.00700 * 94.99812 * 18 2 1 42 42 H 1.09001 * 109.46953 * 299.99667 * 21 19 18 43 43 H 1.09000 * 109.47318 * 59.99264 * 21 19 18 44 44 H 1.09000 * 109.47227 * 59.99725 * 24 22 21 45 45 H 1.09004 * 109.47014 * 180.02562 * 24 22 21 46 46 H 1.09006 * 109.46717 * 300.00177 * 24 22 21 47 47 H 1.07995 * 119.99349 * 359.97438 * 26 25 22 48 48 H 1.08003 * 119.99999 * 180.22856 * 27 26 25 49 49 H 1.07997 * 120.00146 * 179.83300 * 28 27 26 50 50 H 1.08004 * 119.99586 * 179.97438 * 29 28 27 51 51 H 1.08003 * 119.99786 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2495 5 7 3.5040 -0.8266 -1.1907 6 6 4.0302 -1.5156 -2.3766 7 6 5.5315 -1.6041 -2.2812 8 8 6.1067 -1.1385 -1.3202 9 7 6.2353 -2.1997 -3.2643 10 6 7.6011 -2.2797 -3.1779 11 1 8.1133 -1.8651 -2.3221 12 6 8.3266 -2.8942 -4.1912 13 7 7.7035 -3.3991 -5.2322 14 14 10.1877 -3.0026 -4.0737 15 1 10.5634 -3.7607 -2.8532 16 1 10.7196 -3.7000 -5.2720 17 1 10.7598 -1.6342 -4.0021 18 7 2.0184 -0.6908 1.1960 19 6 2.1472 -0.0185 2.3570 20 8 1.8583 1.1581 2.4118 21 6 2.6501 -0.7289 3.5873 22 6 2.7009 0.2539 4.7588 23 1 1.7208 0.7119 4.8915 24 6 3.7369 1.3415 4.4675 25 6 3.0857 -0.4826 6.0159 26 6 4.2934 -1.1519 6.0828 27 6 4.6481 -1.8241 7.2374 28 6 3.7914 -1.8340 8.3223 29 6 2.5814 -1.1692 8.2536 30 6 2.2285 -0.4936 7.1004 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8898 33 1 -0.3633 -1.0277 -0.0005 34 1 1.6052 -1.7197 -1.2954 35 1 1.7515 -0.1581 -2.1370 36 1 3.9279 0.0826 -1.0826 37 1 3.6093 -2.5197 -2.4299 38 1 3.7555 -0.9585 -3.2722 39 1 5.7753 -2.5717 -4.0331 40 1 8.2099 -3.8278 -5.9397 41 1 2.2491 -1.6319 1.1524 42 1 1.9779 -1.5512 3.8323 43 1 3.6494 -1.1208 3.3976 44 1 3.4586 1.8741 3.5581 45 1 3.7734 2.0414 5.3023 46 1 4.7170 0.8833 4.3346 47 1 4.9609 -1.1473 5.2339 48 1 5.5933 -2.3439 7.2909 49 1 4.0673 -2.3615 9.2234 50 1 1.9120 -1.1773 9.1011 51 1 1.2829 0.0255 7.0465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268672730.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:59 Heat of formation + Delta-G solvation = -86.876200 kcal Electronic energy + Delta-G solvation = -29566.332263 eV Core-core repulsion = 25463.718248 eV Total energy + Delta-G solvation = -4102.614015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12313 -40.20659 -39.99098 -37.88760 -36.10250 -35.83532 -35.03792 -33.25464 -32.23652 -31.75452 -30.54165 -28.95653 -28.56709 -26.68649 -24.79657 -24.42414 -23.42413 -22.45890 -21.50005 -21.02288 -20.65628 -19.89531 -18.33920 -17.97882 -17.41145 -17.29372 -16.62942 -16.49483 -16.33506 -16.04006 -15.98137 -15.66311 -15.26570 -15.17276 -14.85250 -14.79707 -14.51419 -14.32603 -14.09029 -14.02791 -13.65283 -13.54567 -13.42860 -13.17884 -13.07417 -12.98213 -12.84750 -12.76942 -12.56541 -12.42801 -12.20630 -12.13023 -12.11593 -11.83903 -11.71090 -11.54715 -11.49804 -10.66618 -10.34407 -10.00966 -9.90621 -9.78039 -9.57818 -9.33981 -8.46380 -5.94819 0.47979 0.54035 1.39588 1.41652 1.52224 1.77002 2.06774 2.28699 2.34525 2.90567 2.93195 3.21108 3.52660 3.70260 3.80797 3.84974 4.06549 4.17086 4.20077 4.22721 4.25669 4.34122 4.35083 4.41395 4.52653 4.54334 4.60460 4.65276 4.66067 4.67767 4.71489 4.77528 4.82125 4.86516 5.00531 5.10211 5.16130 5.19237 5.25349 5.29051 5.37074 5.40910 5.63100 5.66908 5.68247 5.78859 5.87909 6.09646 6.16344 6.32372 6.60844 6.70835 7.13314 7.40191 7.57471 8.13044 8.70630 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.002130 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.865252 B =13144.442142 C =15528.704456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.061 0.939 4 C 0.054 3.946 5 N -0.677 5.677 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.333 4.333 11 H 0.077 0.923 12 C -0.013 4.013 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.273 1.273 18 N -0.704 5.704 19 C 0.513 3.487 20 O -0.580 6.580 21 C -0.129 4.129 22 C -0.026 4.026 23 H 0.078 0.922 24 C -0.145 4.145 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.132 4.132 29 C -0.124 4.124 30 C -0.127 4.127 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.339 0.661 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.411 0.589 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.121 0.879 48 H 0.133 0.867 49 H 0.140 0.860 50 H 0.141 0.859 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.513 1.463 18.515 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.080 0.920 4 C -0.075 4.075 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.510 6.510 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.095 0.905 12 C -0.213 4.213 13 N -0.560 5.560 14 Si 0.815 3.185 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.198 1.198 18 N -0.354 5.354 19 C 0.300 3.700 20 O -0.461 6.461 21 C -0.168 4.168 22 C -0.045 4.045 23 H 0.097 0.903 24 C -0.202 4.202 25 C -0.083 4.083 26 C -0.145 4.145 27 C -0.146 4.146 28 C -0.149 4.149 29 C -0.142 4.142 30 C -0.145 4.145 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.083 0.917 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.247 0.753 42 H 0.129 0.871 43 H 0.116 0.884 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.139 0.861 48 H 0.151 0.849 49 H 0.157 0.843 50 H 0.159 0.841 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.278 1.920 19.362 25.368 hybrid contribution 0.976 0.125 -1.328 1.653 sum -15.302 2.045 18.033 23.739 Atomic orbital electron populations 1.22042 0.93333 1.03114 1.02486 1.20916 0.94736 0.96203 0.84092 0.92042 1.22378 0.86823 1.02069 0.96228 1.60061 1.05342 1.26187 1.39284 1.21539 0.90288 1.01811 0.92986 1.20942 0.90687 0.82426 0.83522 1.90501 1.72842 1.52998 1.34659 1.41926 1.06793 1.51755 1.20607 1.19598 0.83143 1.36894 1.06649 0.90467 1.26016 1.04799 0.95875 0.94601 1.69654 1.38283 1.38420 1.09662 0.85017 0.76983 0.78559 0.77966 1.19712 1.19490 1.19842 1.45884 1.66124 1.14668 1.08769 1.20937 0.76623 0.86940 0.85453 1.90630 1.52173 1.17449 1.85822 1.21738 1.04015 0.99465 0.91617 1.19749 1.00064 0.94205 0.90495 0.90342 1.21895 0.98034 0.98408 1.01885 1.19899 0.94929 0.98033 0.95460 1.21185 0.96582 0.98036 0.98708 1.21417 1.00426 0.99366 0.93422 1.21455 0.94517 0.99795 0.99179 1.21430 0.97249 0.97280 0.98247 1.21296 0.99853 1.00085 0.93252 0.93465 0.90297 0.90831 0.88517 0.92365 0.84303 0.87223 0.91664 0.76944 0.91314 0.75260 0.87071 0.88362 0.92372 0.92685 0.93077 0.86149 0.84877 0.84259 0.84099 0.85136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.48 71.98 0.68 -1.77 16 2 C 0.15 2.99 2.81 45.00 0.13 3.12 16 3 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.05 1.05 5.24 86.31 0.45 1.51 16 5 N -0.68 -19.32 5.85 -517.93 -3.03 -22.35 16 6 C 0.07 2.08 6.17 85.56 0.53 2.61 16 7 C 0.44 20.13 7.82 87.66 0.69 20.82 16 8 O -0.62 -33.94 15.78 -3.07 -0.05 -33.99 16 9 N -0.57 -28.82 5.29 -306.99 -1.62 -30.44 16 10 C -0.33 -18.75 9.68 84.04 0.81 -17.94 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 13 N -0.92 -49.05 13.05 21.66 0.28 -48.77 16 14 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 18 N -0.70 -14.92 4.80 -442.52 -2.12 -17.04 16 19 C 0.51 12.48 7.51 87.66 0.66 13.14 16 20 O -0.58 -17.90 13.63 -3.02 -0.04 -17.94 16 21 C -0.13 -2.51 4.91 29.85 0.15 -2.37 16 22 C -0.03 -0.54 2.21 -11.54 -0.03 -0.57 16 23 H 0.08 1.70 7.69 -2.39 -0.02 1.68 16 24 C -0.15 -3.44 8.75 71.98 0.63 -2.81 16 25 C -0.08 -1.60 4.78 -19.87 -0.09 -1.69 16 26 C -0.13 -2.45 8.76 22.27 0.20 -2.25 16 27 C -0.13 -2.19 10.05 22.27 0.22 -1.96 16 28 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 29 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 30 C -0.13 -2.16 9.67 22.27 0.22 -1.94 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.34 11.11 8.43 -89.70 -0.76 10.35 16 37 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 40 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.41 7.68 8.60 -92.71 -0.80 6.88 16 42 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.10 1.94 7.56 -2.39 -0.02 1.92 16 44 H 0.06 1.65 5.95 -2.39 -0.01 1.64 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.19 7.41 -2.38 -0.02 1.18 16 47 H 0.12 2.30 7.16 -2.91 -0.02 2.28 16 48 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 49 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 50 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 51 H 0.13 1.85 7.95 -2.91 -0.02 1.83 16 Total: -1.00 -71.00 421.85 0.26 -70.74 By element: Atomic # 1 Polarization: 52.11 SS G_CDS: -1.33 Total: 50.78 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 6.15 Total: 4.30 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -6.49 Total: -118.60 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.00 0.26 -70.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268672730.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.139 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds