Wall clock time and date at job start Wed Apr 1 2020 04:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46561 * 2 1 4 4 C 1.52998 * 109.47145 * 240.00127 * 2 1 3 5 5 N 1.46906 * 109.46971 * 184.99922 * 4 2 1 6 6 C 1.46900 * 110.99930 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47024 * 179.97438 * 6 5 4 8 8 O 1.21297 * 120.00155 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00094 * 180.02562 * 7 6 5 10 10 C 1.37093 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00007 * 180.02562 * 10 9 7 13 13 N 1.31419 * 119.99549 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00234 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47061 * 59.99870 * 14 12 10 16 16 H 1.48505 * 109.47342 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47379 * 299.99599 * 14 12 10 18 18 N 1.46500 * 109.47125 * 119.99636 * 2 1 3 19 19 C 1.34777 * 120.00168 * 275.00361 * 18 2 1 20 20 O 1.21278 * 119.99916 * 359.97438 * 19 18 2 21 21 C 1.50698 * 119.99931 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.46933 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47502 * 305.00351 * 22 21 19 24 24 C 1.53006 * 109.47127 * 65.00194 * 22 21 19 25 25 C 1.50699 * 109.47078 * 184.99857 * 22 21 19 26 26 C 1.38238 * 120.00152 * 299.72845 * 25 22 21 27 27 C 1.38228 * 119.99981 * 179.78971 * 26 25 22 28 28 C 1.38233 * 120.00446 * 0.43942 * 27 26 25 29 29 C 1.38237 * 119.99774 * 359.81149 * 28 27 26 30 30 C 1.38236 * 120.00068 * 119.99965 * 25 22 21 31 31 H 1.08996 * 109.46748 * 60.00323 * 1 2 3 32 32 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47158 * 300.00079 * 1 2 3 34 34 H 1.08999 * 109.47190 * 304.99462 * 4 2 1 35 35 H 1.08999 * 109.47377 * 64.99887 * 4 2 1 36 36 H 1.00895 * 110.99746 * 303.95307 * 5 4 2 37 37 H 1.09003 * 109.47187 * 299.99868 * 6 5 4 38 38 H 1.09000 * 109.47127 * 59.99713 * 6 5 4 39 39 H 0.96993 * 119.99517 * 359.97438 * 9 7 6 40 40 H 0.97000 * 119.99272 * 179.97438 * 13 12 10 41 41 H 0.97001 * 119.99650 * 95.00367 * 18 2 1 42 42 H 1.09000 * 109.47172 * 60.00175 * 21 19 18 43 43 H 1.08998 * 109.47020 * 299.99696 * 21 19 18 44 44 H 1.09001 * 109.47002 * 299.99574 * 24 22 21 45 45 H 1.08993 * 109.46955 * 60.00011 * 24 22 21 46 46 H 1.09000 * 109.47050 * 179.97438 * 24 22 21 47 47 H 1.08004 * 119.99897 * 359.97438 * 26 25 22 48 48 H 1.07998 * 120.00272 * 180.27611 * 27 26 25 49 49 H 1.08003 * 120.00641 * 179.83923 * 28 27 26 50 50 H 1.07999 * 120.00221 * 180.02562 * 29 28 27 51 51 H 1.08004 * 119.99815 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5042 -0.8266 -1.1904 6 6 4.0304 -1.5158 -2.3761 7 6 5.5318 -1.6042 -2.2807 8 8 6.1068 -1.1393 -1.3192 9 7 6.2356 -2.1999 -3.2637 10 6 7.6014 -2.2808 -3.1766 11 1 8.1134 -1.8668 -2.3204 12 6 8.3271 -2.8944 -4.1902 13 7 7.7041 -3.3977 -5.2321 14 14 10.1881 -3.0040 -4.0719 15 1 10.5626 -3.7637 -2.8521 16 1 10.7202 -3.7002 -5.2709 17 1 10.7609 -1.6360 -3.9985 18 7 2.0184 -0.6905 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8590 1.1587 2.4115 21 6 2.6499 -0.7284 3.5875 22 6 2.7018 0.2549 4.7585 23 1 3.3031 1.1204 4.4800 24 6 1.2828 0.7101 5.1055 25 6 3.3191 -0.4215 5.9554 26 6 2.7253 -1.5466 6.4962 27 6 3.2939 -2.1695 7.5913 28 6 4.4514 -1.6622 8.1514 29 6 5.0424 -0.5340 7.6139 30 6 4.4761 0.0864 6.5160 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6055 -1.7198 -1.2951 35 1 1.7517 -0.1583 -2.1370 36 1 3.9280 0.0826 -1.0823 37 1 3.6096 -2.5199 -2.4294 38 1 3.7558 -0.9588 -3.2719 39 1 5.7758 -2.5720 -4.0323 40 1 8.2108 -3.8258 -5.9399 41 1 2.2491 -1.6317 1.1526 42 1 3.6493 -1.1201 3.3979 43 1 1.9778 -1.5507 3.8326 44 1 0.8363 1.1994 4.2398 45 1 0.6816 -0.1553 5.3841 46 1 1.3198 1.4103 5.9401 47 1 1.8186 -1.9407 6.0611 48 1 2.8324 -3.0511 8.0111 49 1 4.8942 -2.1473 9.0087 50 1 5.9469 -0.1378 8.0512 51 1 4.9379 0.9678 6.0959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268672731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:03 Heat of formation + Delta-G solvation = -65.210220 kcal Electronic energy + Delta-G solvation = -29518.929680 eV Core-core repulsion = 25417.255173 eV Total energy + Delta-G solvation = -4101.674507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.24142 -39.31937 -38.32268 -36.82059 -35.09440 -34.25354 -33.64940 -31.39270 -31.17163 -31.08173 -29.81447 -27.72417 -27.60917 -25.04427 -23.89191 -23.23932 -22.73550 -21.61076 -20.57535 -19.85957 -19.24261 -17.91431 -17.47490 -16.75835 -16.63433 -15.93000 -15.56283 -15.29305 -15.12544 -14.98371 -14.58552 -14.48954 -14.14032 -14.05323 -13.78932 -13.58380 -13.52527 -13.34055 -13.23281 -12.94553 -12.61192 -12.55450 -12.46526 -12.01764 -11.91240 -11.75987 -11.55577 -11.49973 -11.48593 -11.31633 -11.03227 -10.98702 -10.93464 -10.79970 -10.45557 -10.23007 -9.67491 -9.51718 -9.09787 -8.99342 -8.87299 -8.49990 -8.12161 -7.98026 -6.43479 -3.84344 1.17340 1.22315 2.71836 3.18976 3.20788 3.24749 3.29232 3.61966 3.88602 4.04503 4.27406 4.48934 4.55668 4.76373 4.81257 4.84367 4.93079 4.96823 5.02134 5.09017 5.12029 5.22017 5.27944 5.31043 5.32576 5.38582 5.44144 5.46564 5.56064 5.58688 5.64553 5.75815 5.80119 5.84299 5.88352 5.92546 5.94634 6.03483 6.05024 6.19175 6.23396 6.32089 6.33532 6.49789 6.57256 6.82736 7.12881 7.53382 7.57264 7.61170 8.04156 8.31854 8.59298 9.16058 9.52220 10.03697 10.74153 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.002158 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.696496 B =12971.067108 C =15558.982668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.145 3.855 3 H 0.085 0.915 4 C 0.048 3.952 5 N -0.666 5.666 6 C 0.051 3.949 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.563 5.563 10 C -0.300 4.300 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 N -0.708 5.708 19 C 0.518 3.482 20 O -0.547 6.547 21 C -0.134 4.134 22 C -0.035 4.035 23 H 0.087 0.913 24 C -0.147 4.147 25 C -0.074 4.074 26 C -0.115 4.115 27 C -0.120 4.120 28 C -0.127 4.127 29 C -0.118 4.118 30 C -0.115 4.115 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.351 0.649 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.405 0.595 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.737 2.726 18.351 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.103 0.897 4 C -0.082 4.082 5 N -0.299 5.299 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.467 6.467 9 N -0.200 5.200 10 C -0.429 4.429 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.359 5.359 19 C 0.305 3.695 20 O -0.426 6.426 21 C -0.174 4.174 22 C -0.054 4.054 23 H 0.105 0.895 24 C -0.204 4.204 25 C -0.074 4.074 26 C -0.133 4.133 27 C -0.138 4.138 28 C -0.145 4.145 29 C -0.136 4.136 30 C -0.133 4.133 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.170 0.830 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.240 0.760 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.098 0.902 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.472 3.213 19.224 24.885 hybrid contribution 0.758 -0.292 -1.307 1.539 sum -14.714 2.921 17.916 23.367 Atomic orbital electron populations 1.22132 0.95107 1.02134 1.02534 1.20916 0.93481 0.97490 0.84157 0.89654 1.22315 0.89530 1.00663 0.95739 1.60057 1.03039 1.26874 1.39939 1.21676 0.95314 0.99837 0.91378 1.19804 0.88009 0.84636 0.85045 1.90532 1.71107 1.51831 1.33190 1.41857 1.07397 1.50927 1.19824 1.19649 0.81516 1.35248 1.06519 0.87994 1.25264 1.00714 0.96741 0.95215 1.69608 1.36799 1.38575 1.09357 0.85916 0.82097 0.78609 0.77597 1.19863 1.20966 1.19907 1.45866 1.66669 1.14445 1.08934 1.20554 0.77083 0.87274 0.84637 1.90642 1.50718 1.16056 1.85137 1.21743 1.03689 0.99285 0.92725 1.19875 0.97846 0.97219 0.90448 0.89496 1.21952 0.94961 1.00985 1.02512 1.19926 0.95163 0.95599 0.96695 1.20998 0.99979 0.95772 0.96572 1.21130 0.96266 0.99858 0.96553 1.21140 0.96334 0.96803 1.00248 1.21160 0.99857 0.96098 0.96530 1.21141 0.95589 1.00184 0.96368 0.91723 0.92390 0.91922 0.90510 0.93986 0.82979 0.89612 0.93869 0.77478 0.91815 0.75986 0.88363 0.89054 0.90224 0.93286 0.92932 0.86188 0.86242 0.86328 0.86147 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.48 37.16 0.35 -1.08 16 2 C 0.14 1.56 2.81 -67.93 -0.19 1.37 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C 0.05 0.52 5.24 -3.82 -0.02 0.50 16 5 N -0.67 -10.02 5.85 -115.06 -0.67 -10.70 16 6 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 7 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 8 O -0.58 -15.64 15.78 5.54 0.09 -15.55 16 9 N -0.56 -14.12 5.29 -10.96 -0.06 -14.18 16 10 C -0.30 -8.32 9.68 -14.94 -0.14 -8.47 16 11 H 0.10 2.97 7.16 -52.48 -0.38 2.60 16 12 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 13 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 14 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 18 N -0.71 -7.74 4.80 -53.80 -0.26 -8.00 16 19 C 0.52 6.24 7.51 -10.99 -0.08 6.15 16 20 O -0.55 -8.15 13.63 5.56 0.08 -8.07 16 21 C -0.13 -1.32 4.92 -27.89 -0.14 -1.46 16 22 C -0.04 -0.36 2.21 -91.77 -0.20 -0.56 16 23 H 0.09 1.00 7.69 -51.93 -0.40 0.61 16 24 C -0.15 -1.44 8.74 37.16 0.32 -1.11 16 25 C -0.07 -0.73 4.78 -104.62 -0.50 -1.23 16 26 C -0.12 -1.03 8.76 -39.59 -0.35 -1.38 16 27 C -0.12 -1.02 10.05 -39.59 -0.40 -1.42 16 28 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 29 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 30 C -0.11 -1.14 9.67 -39.58 -0.38 -1.52 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.35 5.82 8.43 -39.29 -0.33 5.49 16 37 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.41 4.05 8.60 -40.82 -0.35 3.70 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 0.71 7.59 -51.93 -0.39 0.32 16 44 H 0.08 0.92 5.95 -51.93 -0.31 0.61 16 45 H 0.05 0.41 7.37 -51.93 -0.38 0.03 16 46 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.12 0.89 7.16 -52.48 -0.38 0.51 16 48 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 1.10 7.95 -52.48 -0.42 0.69 16 LS Contribution 421.86 15.07 6.36 6.36 Total: -1.00 -32.57 421.86 -9.77 -42.34 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: -8.26 Total: 17.21 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -2.74 Total: -1.73 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -0.26 Total: -56.54 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: 0.16 Total: -23.62 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.57 -9.77 -42.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268672731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.871 kcal (2) G-P(sol) polarization free energy of solvation -32.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds