Wall clock time and date at job start Wed Apr 1 2020 04:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46561 * 2 1 4 4 C 1.52998 * 109.47145 * 240.00127 * 2 1 3 5 5 N 1.46906 * 109.46971 * 184.99922 * 4 2 1 6 6 C 1.46900 * 110.99930 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47024 * 179.97438 * 6 5 4 8 8 O 1.21297 * 120.00155 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00094 * 180.02562 * 7 6 5 10 10 C 1.37093 * 119.99907 * 180.02562 * 9 7 6 11 11 H 1.08004 * 120.00021 * 359.97438 * 10 9 7 12 12 C 1.38949 * 120.00007 * 180.02562 * 10 9 7 13 13 N 1.31419 * 119.99549 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00234 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47061 * 59.99870 * 14 12 10 16 16 H 1.48505 * 109.47342 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47379 * 299.99599 * 14 12 10 18 18 N 1.46500 * 109.47125 * 119.99636 * 2 1 3 19 19 C 1.34777 * 120.00168 * 275.00361 * 18 2 1 20 20 O 1.21278 * 119.99916 * 359.97438 * 19 18 2 21 21 C 1.50698 * 119.99931 * 180.02562 * 19 18 2 22 22 C 1.52997 * 109.46933 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47502 * 305.00351 * 22 21 19 24 24 C 1.53006 * 109.47127 * 65.00194 * 22 21 19 25 25 C 1.50699 * 109.47078 * 184.99857 * 22 21 19 26 26 C 1.38238 * 120.00152 * 299.72845 * 25 22 21 27 27 C 1.38228 * 119.99981 * 179.78971 * 26 25 22 28 28 C 1.38233 * 120.00446 * 0.43942 * 27 26 25 29 29 C 1.38237 * 119.99774 * 359.81149 * 28 27 26 30 30 C 1.38236 * 120.00068 * 119.99965 * 25 22 21 31 31 H 1.08996 * 109.46748 * 60.00323 * 1 2 3 32 32 H 1.09000 * 109.46561 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47158 * 300.00079 * 1 2 3 34 34 H 1.08999 * 109.47190 * 304.99462 * 4 2 1 35 35 H 1.08999 * 109.47377 * 64.99887 * 4 2 1 36 36 H 1.00895 * 110.99746 * 303.95307 * 5 4 2 37 37 H 1.09003 * 109.47187 * 299.99868 * 6 5 4 38 38 H 1.09000 * 109.47127 * 59.99713 * 6 5 4 39 39 H 0.96993 * 119.99517 * 359.97438 * 9 7 6 40 40 H 0.97000 * 119.99272 * 179.97438 * 13 12 10 41 41 H 0.97001 * 119.99650 * 95.00367 * 18 2 1 42 42 H 1.09000 * 109.47172 * 60.00175 * 21 19 18 43 43 H 1.08998 * 109.47020 * 299.99696 * 21 19 18 44 44 H 1.09001 * 109.47002 * 299.99574 * 24 22 21 45 45 H 1.08993 * 109.46955 * 60.00011 * 24 22 21 46 46 H 1.09000 * 109.47050 * 179.97438 * 24 22 21 47 47 H 1.08004 * 119.99897 * 359.97438 * 26 25 22 48 48 H 1.07998 * 120.00272 * 180.27611 * 27 26 25 49 49 H 1.08003 * 120.00641 * 179.83923 * 28 27 26 50 50 H 1.07999 * 120.00221 * 180.02562 * 29 28 27 51 51 H 1.08004 * 119.99815 * 359.97438 * 30 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5042 -0.8266 -1.1904 6 6 4.0304 -1.5158 -2.3761 7 6 5.5318 -1.6042 -2.2807 8 8 6.1068 -1.1393 -1.3192 9 7 6.2356 -2.1999 -3.2637 10 6 7.6014 -2.2808 -3.1766 11 1 8.1134 -1.8668 -2.3204 12 6 8.3271 -2.8944 -4.1902 13 7 7.7041 -3.3977 -5.2321 14 14 10.1881 -3.0040 -4.0719 15 1 10.5626 -3.7637 -2.8521 16 1 10.7202 -3.7002 -5.2709 17 1 10.7609 -1.6360 -3.9985 18 7 2.0184 -0.6905 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8590 1.1587 2.4115 21 6 2.6499 -0.7284 3.5875 22 6 2.7018 0.2549 4.7585 23 1 3.3031 1.1204 4.4800 24 6 1.2828 0.7101 5.1055 25 6 3.3191 -0.4215 5.9554 26 6 2.7253 -1.5466 6.4962 27 6 3.2939 -2.1695 7.5913 28 6 4.4514 -1.6622 8.1514 29 6 5.0424 -0.5340 7.6139 30 6 4.4761 0.0864 6.5160 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 1.6055 -1.7198 -1.2951 35 1 1.7517 -0.1583 -2.1370 36 1 3.9280 0.0826 -1.0823 37 1 3.6096 -2.5199 -2.4294 38 1 3.7558 -0.9588 -3.2719 39 1 5.7758 -2.5720 -4.0323 40 1 8.2108 -3.8258 -5.9399 41 1 2.2491 -1.6317 1.1526 42 1 3.6493 -1.1201 3.3979 43 1 1.9778 -1.5507 3.8326 44 1 0.8363 1.1994 4.2398 45 1 0.6816 -0.1553 5.3841 46 1 1.3198 1.4103 5.9401 47 1 1.8186 -1.9407 6.0611 48 1 2.8324 -3.0511 8.0111 49 1 4.8942 -2.1473 9.0087 50 1 5.9469 -0.1378 8.0512 51 1 4.9379 0.9678 6.0959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268672731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:02 Heat of formation + Delta-G solvation = -87.123621 kcal Electronic energy + Delta-G solvation = -29519.879916 eV Core-core repulsion = 25417.255173 eV Total energy + Delta-G solvation = -4102.624744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.12204 -40.20843 -39.99104 -37.88755 -36.10409 -35.83633 -35.03999 -33.25908 -32.23637 -31.75621 -30.54163 -28.96215 -28.52836 -26.69150 -24.80820 -24.41085 -23.42848 -22.46104 -21.49204 -21.02795 -20.66009 -19.90068 -18.33367 -17.98463 -17.44354 -17.30683 -16.66571 -16.44884 -16.22230 -16.08015 -15.94261 -15.77676 -15.28881 -15.16417 -14.86014 -14.81184 -14.42510 -14.32645 -14.09376 -14.02406 -13.73429 -13.52510 -13.36092 -13.23209 -13.07724 -12.98673 -12.78996 -12.71336 -12.60917 -12.43337 -12.20632 -12.13168 -12.12097 -11.81441 -11.72983 -11.54222 -11.50339 -10.65390 -10.34837 -10.01430 -9.91089 -9.77923 -9.57403 -9.34272 -8.46887 -5.95366 0.48276 0.54109 1.39277 1.41331 1.51938 1.77176 2.06257 2.28469 2.34597 2.90432 2.93477 3.20631 3.52269 3.70069 3.80189 3.85268 4.08931 4.16695 4.19040 4.24135 4.25891 4.33857 4.34717 4.41319 4.52407 4.54313 4.60282 4.65812 4.66168 4.67515 4.71716 4.77814 4.82511 4.87943 5.03073 5.11074 5.16526 5.20102 5.26005 5.29953 5.39220 5.40495 5.62733 5.66769 5.68022 5.78675 5.87638 6.09385 6.16605 6.31785 6.60455 6.71110 7.12869 7.40467 7.56926 8.12635 8.70185 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008888 B = 0.002158 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.696496 B =12971.067108 C =15558.982668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.146 3.854 3 H 0.060 0.940 4 C 0.054 3.946 5 N -0.678 5.678 6 C 0.066 3.934 7 C 0.436 3.564 8 O -0.624 6.624 9 N -0.573 5.573 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.991 3.009 15 H -0.272 1.272 16 H -0.270 1.270 17 H -0.273 1.273 18 N -0.703 5.703 19 C 0.513 3.487 20 O -0.581 6.581 21 C -0.128 4.128 22 C -0.031 4.031 23 H 0.062 0.938 24 C -0.139 4.139 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.125 4.125 28 C -0.134 4.134 29 C -0.129 4.129 30 C -0.136 4.136 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.339 0.661 37 H 0.110 0.890 38 H 0.066 0.934 39 H 0.397 0.603 40 H 0.278 0.722 41 H 0.412 0.588 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.050 0.950 47 H 0.137 0.863 48 H 0.142 0.858 49 H 0.139 0.861 50 H 0.134 0.866 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 1.026 18.419 25.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.079 0.921 4 C -0.075 4.075 5 N -0.309 5.309 6 C -0.066 4.066 7 C 0.224 3.776 8 O -0.511 6.511 9 N -0.211 5.211 10 C -0.464 4.464 11 H 0.095 0.905 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.814 3.186 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.199 1.199 18 N -0.354 5.354 19 C 0.300 3.700 20 O -0.461 6.461 21 C -0.167 4.167 22 C -0.049 4.049 23 H 0.081 0.919 24 C -0.196 4.196 25 C -0.084 4.084 26 C -0.138 4.138 27 C -0.142 4.142 28 C -0.152 4.152 29 C -0.147 4.147 30 C -0.154 4.154 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.157 0.843 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.248 0.752 42 H 0.111 0.889 43 H 0.136 0.864 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.069 0.931 47 H 0.155 0.845 48 H 0.160 0.840 49 H 0.157 0.843 50 H 0.152 0.848 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.654 1.484 19.266 25.510 hybrid contribution 1.082 0.264 -1.293 1.706 sum -15.572 1.748 17.974 23.845 Atomic orbital electron populations 1.22040 0.93230 1.03160 1.02500 1.20918 0.94804 0.96159 0.84087 0.92146 1.22382 0.86771 1.02103 0.96247 1.60066 1.05396 1.26168 1.39316 1.21540 0.90241 1.01835 0.92988 1.20959 0.90716 0.82424 0.83513 1.90504 1.72868 1.53048 1.34653 1.41926 1.06797 1.51738 1.20618 1.19600 0.83160 1.36970 1.06621 0.90507 1.26011 1.04795 0.95847 0.94568 1.69663 1.38287 1.38470 1.09608 0.85022 0.76973 0.78568 0.77992 1.19711 1.19422 1.19852 1.45884 1.66121 1.14679 1.08739 1.20941 0.76608 0.86959 0.85459 1.90631 1.52277 1.17537 1.85698 1.21726 1.03823 0.99611 0.91565 1.19766 0.97702 0.96555 0.90926 0.91916 1.21860 0.94786 1.01453 1.01542 1.19932 0.95457 0.96306 0.96753 1.21217 1.00514 0.95330 0.96784 1.21465 0.96159 1.00407 0.96212 1.21467 0.96417 0.96524 1.00749 1.21400 1.00464 0.96466 0.96344 1.21296 0.96210 1.00672 0.97238 0.90348 0.90751 0.93393 0.88449 0.92370 0.84341 0.87171 0.91634 0.76924 0.91294 0.75238 0.88872 0.86431 0.92106 0.91568 0.93076 0.84532 0.83978 0.84302 0.84843 0.86324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.48 71.98 0.68 -1.72 16 2 C 0.15 2.98 2.81 44.99 0.13 3.11 16 3 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 4 C 0.05 1.05 5.24 86.30 0.45 1.50 16 5 N -0.68 -19.49 5.85 -517.93 -3.03 -22.52 16 6 C 0.07 2.10 6.17 85.56 0.53 2.62 16 7 C 0.44 20.25 7.82 87.66 0.69 20.93 16 8 O -0.62 -34.27 15.78 -3.08 -0.05 -34.32 16 9 N -0.57 -28.96 5.29 -306.98 -1.62 -30.58 16 10 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 11 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.66 5.50 84.93 0.47 -0.19 16 13 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 14 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 18 N -0.70 -14.84 4.80 -442.53 -2.12 -16.96 16 19 C 0.51 12.46 7.51 87.66 0.66 13.12 16 20 O -0.58 -17.98 13.63 -3.02 -0.04 -18.02 16 21 C -0.13 -2.47 4.92 29.85 0.15 -2.33 16 22 C -0.03 -0.64 2.21 -11.54 -0.03 -0.66 16 23 H 0.06 1.58 7.69 -2.39 -0.02 1.56 16 24 C -0.14 -2.73 8.74 71.98 0.63 -2.10 16 25 C -0.08 -1.66 4.78 -19.87 -0.09 -1.75 16 26 C -0.12 -1.98 8.76 22.27 0.20 -1.79 16 27 C -0.12 -1.87 10.05 22.27 0.22 -1.65 16 28 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 29 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 30 C -0.14 -2.78 9.67 22.27 0.22 -2.56 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.34 11.21 8.43 -89.70 -0.76 10.45 16 37 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.40 18.90 7.90 -92.71 -0.73 18.17 16 40 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.41 7.61 8.60 -92.71 -0.80 6.81 16 42 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.12 1.63 7.59 -2.39 -0.02 1.61 16 44 H 0.06 1.44 5.95 -2.39 -0.01 1.43 16 45 H 0.07 1.04 7.37 -2.39 -0.02 1.02 16 46 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.14 1.70 7.16 -2.91 -0.02 1.68 16 48 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 49 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 50 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 51 H 0.12 2.35 7.95 -2.91 -0.02 2.33 16 Total: -1.00 -72.12 421.86 0.26 -71.86 By element: Atomic # 1 Polarization: 51.37 SS G_CDS: -1.33 Total: 50.04 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 6.15 Total: 4.54 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -6.49 Total: -118.95 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.09 Total: -52.34 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.12 0.26 -71.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268672731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.261 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds