Wall clock time and date at job start Wed Apr 1 2020 05:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46829 * 2 1 4 4 C 1.50701 * 109.47197 * 119.99758 * 2 1 3 5 5 C 1.37983 * 120.07456 * 333.05126 * 4 2 1 6 6 C 1.38341 * 120.14342 * 180.27716 * 5 4 2 7 7 C 1.38375 * 120.29235 * 359.69352 * 6 5 4 8 8 C 1.37927 * 120.14988 * 0.02562 * 7 6 5 9 9 C 1.39549 * 120.07741 * 152.74653 * 4 2 1 10 10 C 1.47852 * 120.14203 * 0.02562 * 9 4 2 11 11 O 1.21548 * 120.00013 * 2.18431 * 10 9 4 12 12 N 1.34778 * 119.99982 * 182.17242 * 10 9 4 13 13 C 1.46504 * 119.99412 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47250 * 324.99748 * 13 12 10 15 15 C 1.52994 * 109.46944 * 85.00735 * 13 12 10 16 16 C 1.53008 * 109.46682 * 205.00111 * 13 12 10 17 17 N 1.46902 * 109.47029 * 55.00184 * 16 13 12 18 18 C 1.46897 * 111.00219 * 179.97438 * 17 16 13 19 19 C 1.50697 * 109.47157 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00328 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99491 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99664 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99709 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99834 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00216 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99869 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47380 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47552 * 120.00036 * 26 24 22 29 29 H 1.48502 * 109.46839 * 239.99990 * 26 24 22 30 30 H 1.09004 * 109.47031 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.46922 * 60.00131 * 1 2 3 32 32 H 1.09005 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47371 * 239.99891 * 2 1 3 34 34 H 1.09004 * 109.46966 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47262 * 299.99661 * 3 2 1 36 36 H 1.08999 * 109.47662 * 60.00441 * 3 2 1 37 37 H 1.08001 * 119.92923 * 359.97438 * 5 4 2 38 38 H 1.08002 * 119.84867 * 179.71550 * 6 5 4 39 39 H 1.08004 * 119.92359 * 180.02562 * 7 6 5 40 40 H 1.08002 * 120.08237 * 180.02562 * 8 7 6 41 41 H 0.96998 * 119.99954 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.46798 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.47211 * 299.99198 * 15 13 12 44 44 H 1.09001 * 109.47568 * 59.99800 * 15 13 12 45 45 H 1.09001 * 109.46822 * 295.00354 * 16 13 12 46 46 H 1.08998 * 109.47102 * 175.00101 * 16 13 12 47 47 H 1.00903 * 110.99942 * 303.95524 * 17 16 13 48 48 H 1.09002 * 109.47042 * 300.00136 * 18 17 16 49 49 H 1.09002 * 109.47073 * 60.00127 * 18 17 16 50 50 H 0.96998 * 120.00249 * 359.97438 * 21 19 18 51 51 H 0.96998 * 120.00145 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.2594 -0.7450 2.3729 6 6 1.7216 -1.3918 3.5051 7 6 2.9579 -2.0132 3.4982 8 6 3.7381 -1.9910 2.3611 9 6 3.2777 -1.3400 1.2151 10 6 4.1087 -1.3122 -0.0074 11 8 3.7255 -0.7065 -0.9891 12 7 5.2912 -1.9583 -0.0333 13 6 6.1148 -1.9301 -1.2446 14 1 5.4694 -1.9343 -2.1230 15 6 6.9733 -0.6637 -1.2483 16 6 7.0225 -3.1616 -1.2728 17 7 6.2047 -4.3756 -1.1485 18 6 7.0444 -5.5807 -1.1724 19 6 6.1725 -6.8030 -1.0436 20 8 4.9699 -6.6822 -0.9414 21 7 6.7291 -8.0305 -1.0409 22 6 5.9360 -9.1426 -0.9231 23 1 4.8652 -9.0349 -0.8322 24 6 6.5098 -10.4081 -0.9209 25 7 7.8126 -10.5390 -1.0321 26 14 5.4290 -11.9233 -0.7612 27 1 4.0074 -11.5081 -0.6518 28 1 5.6031 -12.7839 -1.9587 29 1 5.8175 -12.6824 0.4546 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.2935 -0.2620 2.3848 38 1 1.1146 -1.4121 4.3982 39 1 3.3128 -2.5168 4.3854 40 1 4.7028 -2.4767 2.3568 41 1 5.5969 -2.4418 0.7500 42 1 7.5864 -0.6430 -2.1493 43 1 6.3267 0.2136 -1.2282 44 1 7.6187 -0.6596 -0.3699 45 1 7.7278 -3.1121 -0.4432 46 1 7.5705 -3.1875 -2.2146 47 1 5.6379 -4.3459 -0.3143 48 1 7.5923 -5.6232 -2.1137 49 1 7.7502 -5.5483 -0.3423 50 1 7.6909 -8.1271 -1.1222 51 1 8.2131 -11.4224 -1.0309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268689155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:10 Heat of formation + Delta-G solvation = -52.381283 kcal Electronic energy + Delta-G solvation = -30391.995006 eV Core-core repulsion = 26290.876804 eV Total energy + Delta-G solvation = -4101.118203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72166 -38.88154 -38.24345 -36.74818 -35.50226 -34.22238 -33.63326 -32.12345 -31.22460 -30.31836 -29.93987 -27.61913 -27.23316 -25.10439 -24.22652 -23.49463 -23.22005 -21.40035 -20.64850 -20.02878 -19.28140 -18.10463 -17.82743 -16.56393 -16.30661 -16.04847 -15.48342 -15.28107 -15.13277 -14.93679 -14.53960 -14.45071 -14.29283 -14.18106 -13.88553 -13.57835 -13.51483 -13.20930 -13.08469 -12.64969 -12.63732 -12.39055 -12.35763 -12.12205 -11.95926 -11.79316 -11.70160 -11.62666 -11.49174 -11.19140 -11.10236 -11.02817 -10.99744 -10.81590 -10.35225 -10.23780 -9.53475 -9.51728 -9.25005 -9.09478 -8.84226 -8.48723 -8.10796 -7.97588 -6.43279 -3.84012 0.70865 1.16815 2.80188 3.04620 3.15354 3.26133 3.33590 3.69923 3.88689 4.03488 4.26405 4.50370 4.52896 4.56149 4.78122 4.83194 4.98923 5.02252 5.09322 5.16261 5.17101 5.21091 5.25325 5.25970 5.35596 5.41618 5.52190 5.54907 5.60019 5.64230 5.73937 5.74679 5.75362 5.86482 5.91250 5.94682 5.96710 6.05466 6.07997 6.14217 6.22306 6.24093 6.26072 6.43161 6.59052 6.70296 7.12983 7.40219 7.54204 7.57460 8.05034 8.17113 8.59663 9.16656 9.52613 10.04043 10.74528 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.002330 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.334763 B =12016.696980 C =13322.175995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 C -0.126 4.126 4 C -0.012 4.012 5 C -0.133 4.133 6 C -0.092 4.092 7 C -0.134 4.134 8 C -0.081 4.081 9 C -0.137 4.137 10 C 0.564 3.436 11 O -0.527 6.527 12 N -0.719 5.719 13 C 0.145 3.855 14 H 0.100 0.900 15 C -0.161 4.161 16 C 0.050 3.950 17 N -0.667 5.667 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.581 6.581 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.395 0.605 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.032 0.968 46 H 0.088 0.912 47 H 0.347 0.653 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.392 0.608 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 22.904 7.277 24.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.094 4.094 3 C -0.183 4.183 4 C -0.013 4.013 5 C -0.151 4.151 6 C -0.110 4.110 7 C -0.152 4.152 8 C -0.100 4.100 9 C -0.140 4.140 10 C 0.352 3.648 11 O -0.405 6.405 12 N -0.371 5.371 13 C 0.041 3.959 14 H 0.118 0.882 15 C -0.220 4.220 16 C -0.080 4.080 17 N -0.300 5.300 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.465 6.465 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.050 0.950 46 H 0.106 0.894 47 H 0.167 0.833 48 H 0.106 0.894 49 H 0.061 0.939 50 H 0.225 0.775 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.351 23.199 5.944 24.539 hybrid contribution 0.863 -1.310 1.450 2.136 sum -4.488 21.889 7.394 23.536 Atomic orbital electron populations 1.21975 0.95367 1.01812 1.01519 1.20589 0.94835 0.96723 0.97293 1.21611 1.01475 0.94436 1.00776 1.20023 0.91948 0.93861 0.95482 1.21136 1.00435 1.00959 0.92550 1.21352 0.95703 0.95855 0.98133 1.21081 0.94996 1.00707 0.98403 1.21287 0.99491 0.96749 0.92428 1.19798 0.96449 1.03461 0.94284 1.18203 0.80643 0.78569 0.87392 1.90661 1.70467 1.43305 1.36072 1.45966 1.20380 1.54020 1.16697 1.21050 0.92278 0.93887 0.88709 0.88238 1.22146 0.99862 0.97793 1.02159 1.22317 0.94459 0.89330 1.01913 1.60002 1.23353 0.99770 1.46865 1.21696 0.94765 0.90253 1.01561 1.19803 0.88905 0.84188 0.84604 1.90538 1.14862 1.86074 1.55058 1.41871 1.09889 1.04433 1.63870 1.19753 0.92882 0.83316 1.46821 0.87880 1.25262 0.96128 0.99231 0.97357 1.69618 1.09548 1.24693 1.50483 0.85804 0.80068 0.80765 0.77747 1.19194 1.20714 1.20773 0.92884 0.92360 0.92565 0.86198 0.92456 0.92570 0.93689 0.85203 0.85719 0.85475 0.85797 0.76954 0.91363 0.91838 0.92618 0.95035 0.89384 0.83287 0.89434 0.93877 0.77475 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.41 37.16 0.31 -1.07 16 2 C -0.08 -0.86 2.35 -91.77 -0.22 -1.08 16 3 C -0.13 -1.29 8.84 37.16 0.33 -0.97 16 4 C -0.01 -0.14 5.00 -104.23 -0.52 -0.66 16 5 C -0.13 -1.28 9.13 -39.64 -0.36 -1.64 16 6 C -0.09 -0.81 10.04 -39.49 -0.40 -1.21 16 7 C -0.13 -1.22 10.03 -39.64 -0.40 -1.62 16 8 C -0.08 -0.82 9.54 -39.19 -0.37 -1.20 16 9 C -0.14 -1.64 5.87 -104.97 -0.62 -2.25 16 10 C 0.56 7.34 7.70 -12.33 -0.09 7.25 16 11 O -0.53 -7.94 11.81 5.32 0.06 -7.87 16 12 N -0.72 -8.05 4.31 -54.75 -0.24 -8.28 16 13 C 0.15 1.62 2.88 -67.93 -0.20 1.42 16 14 H 0.10 1.36 7.58 -51.93 -0.39 0.96 16 15 C -0.16 -1.46 9.48 37.15 0.35 -1.11 16 16 C 0.05 0.57 5.30 -3.82 -0.02 0.55 16 17 N -0.67 -10.49 6.12 -115.05 -0.70 -11.19 16 18 C 0.05 0.86 6.17 -4.98 -0.03 0.82 16 19 C 0.44 10.33 7.82 -10.98 -0.09 10.24 16 20 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 21 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 26 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.05 0.41 6.54 -51.93 -0.34 0.07 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.12 1.67 5.44 -51.93 -0.28 1.38 16 34 H 0.06 0.67 7.34 -51.93 -0.38 0.28 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.13 1.01 6.09 -52.49 -0.32 0.69 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.12 1.02 6.41 -52.49 -0.34 0.69 16 41 H 0.40 3.77 6.19 -40.82 -0.25 3.52 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.35 5.64 7.28 -39.29 -0.29 5.36 16 48 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 49 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 51 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 412.88 15.07 6.22 6.22 Total: -1.00 -33.00 412.88 -9.40 -42.40 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: -7.92 Total: 16.97 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.56 Total: -0.49 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: -0.27 Total: -57.48 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: 0.15 Total: -23.65 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.00 -9.40 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268689155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.981 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds