Wall clock time and date at job start Wed Apr 1 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46829 * 2 1 4 4 C 1.50701 * 109.47197 * 119.99758 * 2 1 3 5 5 C 1.37983 * 120.07456 * 333.05126 * 4 2 1 6 6 C 1.38341 * 120.14342 * 180.27716 * 5 4 2 7 7 C 1.38375 * 120.29235 * 359.69352 * 6 5 4 8 8 C 1.37927 * 120.14988 * 0.02562 * 7 6 5 9 9 C 1.39549 * 120.07741 * 152.74653 * 4 2 1 10 10 C 1.47852 * 120.14203 * 0.02562 * 9 4 2 11 11 O 1.21548 * 120.00013 * 2.18431 * 10 9 4 12 12 N 1.34778 * 119.99982 * 182.17242 * 10 9 4 13 13 C 1.46504 * 119.99412 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.47250 * 324.99748 * 13 12 10 15 15 C 1.52994 * 109.46944 * 85.00735 * 13 12 10 16 16 C 1.53008 * 109.46682 * 205.00111 * 13 12 10 17 17 N 1.46902 * 109.47029 * 55.00184 * 16 13 12 18 18 C 1.46897 * 111.00219 * 179.97438 * 17 16 13 19 19 C 1.50697 * 109.47157 * 180.02562 * 18 17 16 20 20 O 1.21289 * 120.00328 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99491 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99664 * 179.97438 * 21 19 18 23 23 H 1.08001 * 119.99709 * 359.97438 * 22 21 19 24 24 C 1.38946 * 119.99834 * 179.97438 * 22 21 19 25 25 N 1.31412 * 120.00216 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 119.99869 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47380 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47552 * 120.00036 * 26 24 22 29 29 H 1.48502 * 109.46839 * 239.99990 * 26 24 22 30 30 H 1.09004 * 109.47031 * 299.99947 * 1 2 3 31 31 H 1.08994 * 109.46922 * 60.00131 * 1 2 3 32 32 H 1.09005 * 109.46971 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47371 * 239.99891 * 2 1 3 34 34 H 1.09004 * 109.46966 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.47262 * 299.99661 * 3 2 1 36 36 H 1.08999 * 109.47662 * 60.00441 * 3 2 1 37 37 H 1.08001 * 119.92923 * 359.97438 * 5 4 2 38 38 H 1.08002 * 119.84867 * 179.71550 * 6 5 4 39 39 H 1.08004 * 119.92359 * 180.02562 * 7 6 5 40 40 H 1.08002 * 120.08237 * 180.02562 * 8 7 6 41 41 H 0.96998 * 119.99954 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.46798 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.47211 * 299.99198 * 15 13 12 44 44 H 1.09001 * 109.47568 * 59.99800 * 15 13 12 45 45 H 1.09001 * 109.46822 * 295.00354 * 16 13 12 46 46 H 1.08998 * 109.47102 * 175.00101 * 16 13 12 47 47 H 1.00903 * 110.99942 * 303.95524 * 17 16 13 48 48 H 1.09002 * 109.47042 * 300.00136 * 18 17 16 49 49 H 1.09002 * 109.47073 * 60.00127 * 18 17 16 50 50 H 0.96998 * 120.00249 * 359.97438 * 21 19 18 51 51 H 0.96998 * 120.00145 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.2594 -0.7450 2.3729 6 6 1.7216 -1.3918 3.5051 7 6 2.9579 -2.0132 3.4982 8 6 3.7381 -1.9910 2.3611 9 6 3.2777 -1.3400 1.2151 10 6 4.1087 -1.3122 -0.0074 11 8 3.7255 -0.7065 -0.9891 12 7 5.2912 -1.9583 -0.0333 13 6 6.1148 -1.9301 -1.2446 14 1 5.4694 -1.9343 -2.1230 15 6 6.9733 -0.6637 -1.2483 16 6 7.0225 -3.1616 -1.2728 17 7 6.2047 -4.3756 -1.1485 18 6 7.0444 -5.5807 -1.1724 19 6 6.1725 -6.8030 -1.0436 20 8 4.9699 -6.6822 -0.9414 21 7 6.7291 -8.0305 -1.0409 22 6 5.9360 -9.1426 -0.9231 23 1 4.8652 -9.0349 -0.8322 24 6 6.5098 -10.4081 -0.9209 25 7 7.8126 -10.5390 -1.0321 26 14 5.4290 -11.9233 -0.7612 27 1 4.0074 -11.5081 -0.6518 28 1 5.6031 -12.7839 -1.9587 29 1 5.8175 -12.6824 0.4546 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.2935 -0.2620 2.3848 38 1 1.1146 -1.4121 4.3982 39 1 3.3128 -2.5168 4.3854 40 1 4.7028 -2.4767 2.3568 41 1 5.5969 -2.4418 0.7500 42 1 7.5864 -0.6430 -2.1493 43 1 6.3267 0.2136 -1.2282 44 1 7.6187 -0.6596 -0.3699 45 1 7.7278 -3.1121 -0.4432 46 1 7.5705 -3.1875 -2.2146 47 1 5.6379 -4.3459 -0.3143 48 1 7.5923 -5.6232 -2.1137 49 1 7.7502 -5.5483 -0.3423 50 1 7.6909 -8.1271 -1.1222 51 1 8.2131 -11.4224 -1.0309 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268689155.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:09 Heat of formation + Delta-G solvation = -74.751663 kcal Electronic energy + Delta-G solvation = -30392.965059 eV Core-core repulsion = 26290.876804 eV Total energy + Delta-G solvation = -4102.088255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.59848 -40.21033 -39.59451 -37.83897 -36.39146 -35.97936 -34.99850 -33.28414 -32.97154 -31.15867 -30.70313 -28.98556 -28.01767 -26.72962 -25.20417 -24.50901 -24.24396 -22.28529 -21.56270 -21.10677 -20.82798 -19.92571 -18.93104 -17.82685 -17.45490 -16.95378 -16.92056 -16.40606 -16.20532 -16.05162 -15.93659 -15.79741 -15.37874 -15.14805 -15.06139 -14.95773 -14.47191 -14.25606 -14.06171 -14.01747 -13.55810 -13.40339 -13.24315 -13.11840 -13.09406 -13.04137 -12.85515 -12.80614 -12.68713 -12.42979 -12.41404 -12.12746 -12.00932 -11.95183 -11.90551 -11.59304 -11.52385 -10.46044 -10.37657 -10.14167 -10.02131 -9.87119 -9.63468 -9.33748 -8.47780 -5.96252 -0.09157 0.41899 1.35631 1.41254 1.55210 1.90930 2.04489 2.16123 2.28429 2.87642 2.90068 3.19666 3.48449 3.69468 3.74399 3.79742 3.91294 4.10718 4.18890 4.26839 4.28596 4.31144 4.36522 4.46801 4.49218 4.51126 4.56365 4.58743 4.66790 4.74098 4.77744 4.78664 4.89352 4.92300 4.97532 5.07827 5.12503 5.20270 5.25266 5.28104 5.38905 5.40387 5.40866 5.53086 5.56865 5.74184 5.86089 5.97866 6.08168 6.34590 6.50725 6.59542 7.12216 7.23503 7.55635 8.11407 8.69760 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011609 B = 0.002330 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.334763 B =12016.696980 C =13322.175995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.118 4.118 4 C -0.031 4.031 5 C -0.138 4.138 6 C -0.089 4.089 7 C -0.139 4.139 8 C -0.089 4.089 9 C -0.162 4.162 10 C 0.555 3.445 11 O -0.557 6.557 12 N -0.713 5.713 13 C 0.148 3.852 14 H 0.068 0.932 15 C -0.150 4.150 16 C 0.056 3.944 17 N -0.688 5.688 18 C 0.065 3.935 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.332 4.332 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.269 1.269 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.087 0.913 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.149 0.851 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.138 0.862 41 H 0.404 0.596 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.342 0.658 48 H 0.106 0.894 49 H 0.074 0.926 50 H 0.397 0.603 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.579 23.101 8.902 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C -0.175 4.175 4 C -0.032 4.032 5 C -0.155 4.155 6 C -0.107 4.107 7 C -0.157 4.157 8 C -0.107 4.107 9 C -0.165 4.165 10 C 0.345 3.655 11 O -0.437 6.437 12 N -0.365 5.365 13 C 0.043 3.957 14 H 0.086 0.914 15 C -0.209 4.209 16 C -0.073 4.073 17 N -0.321 5.321 18 C -0.067 4.067 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.462 4.462 23 H 0.094 0.906 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.194 1.194 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.166 0.834 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.241 0.759 42 H 0.102 0.898 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.161 0.839 48 H 0.124 0.876 49 H 0.091 0.909 50 H 0.231 0.769 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.622 23.400 7.572 25.025 hybrid contribution 0.645 -1.337 0.955 1.765 sum -3.977 22.063 8.526 23.985 Atomic orbital electron populations 1.21934 0.93815 1.01698 1.02717 1.20486 0.96107 0.96762 0.96166 1.21535 1.00153 0.94226 1.01618 1.20199 0.92317 0.94433 0.96214 1.21386 1.00918 1.01058 0.92170 1.21746 0.95732 0.94484 0.98757 1.21440 0.95054 1.00470 0.98716 1.21523 1.00384 0.96546 0.92276 1.19897 0.96989 1.05121 0.94501 1.18540 0.81074 0.78338 0.87591 1.90649 1.71195 1.44700 1.37193 1.45930 1.19957 1.53563 1.17008 1.21001 0.92000 0.95093 0.87595 0.91359 1.22050 0.99444 0.95697 1.03721 1.22378 0.94225 0.87069 1.03633 1.59974 1.24385 1.00773 1.46951 1.21558 0.93826 0.87640 1.03678 1.20948 0.89106 0.85375 0.82254 1.90507 1.17270 1.86928 1.56452 1.41929 1.09893 1.04654 1.64501 1.19668 0.92213 0.85101 1.49234 0.90573 1.26011 0.97474 1.01342 0.96366 1.69668 1.10456 1.25750 1.50142 0.84899 0.77909 0.77324 0.78382 1.19963 1.19655 1.19403 0.90880 0.91928 0.93294 0.89537 0.94406 0.92229 0.92175 0.83375 0.82785 0.83176 0.84431 0.75948 0.89826 0.93471 0.90941 0.92280 0.88131 0.83927 0.87557 0.90865 0.76879 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 8.41 71.98 0.61 -2.04 16 2 C -0.08 -1.81 2.35 -11.54 -0.03 -1.84 16 3 C -0.12 -2.51 8.84 71.98 0.64 -1.87 16 4 C -0.03 -0.71 5.00 -19.61 -0.10 -0.81 16 5 C -0.14 -2.48 9.13 22.23 0.20 -2.27 16 6 C -0.09 -1.37 10.04 22.33 0.22 -1.15 16 7 C -0.14 -2.29 10.03 22.23 0.22 -2.07 16 8 C -0.09 -1.76 9.54 22.53 0.21 -1.54 16 9 C -0.16 -3.99 5.87 -20.09 -0.12 -4.11 16 10 C 0.56 15.28 7.70 86.79 0.67 15.94 16 11 O -0.56 -18.15 11.81 -3.87 -0.05 -18.20 16 12 N -0.71 -16.16 4.31 -445.39 -1.92 -18.08 16 13 C 0.15 3.26 2.88 44.99 0.13 3.39 16 14 H 0.07 1.95 7.58 -2.39 -0.02 1.93 16 15 C -0.15 -2.58 9.48 71.98 0.68 -1.90 16 16 C 0.06 1.16 5.30 86.31 0.46 1.62 16 17 N -0.69 -20.99 6.12 -517.92 -3.17 -24.16 16 18 C 0.07 2.13 6.17 85.56 0.53 2.66 16 19 C 0.44 20.58 7.82 87.66 0.69 21.26 16 20 O -0.63 -35.02 15.78 -3.06 -0.05 -35.07 16 21 N -0.57 -29.13 5.29 -306.98 -1.62 -30.76 16 22 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 23 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -49.22 13.05 21.66 0.28 -48.94 16 26 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 29 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 30 H 0.07 1.02 6.54 -2.38 -0.02 1.00 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.09 2.64 5.44 -2.39 -0.01 2.62 16 34 H 0.04 0.93 7.34 -2.38 -0.02 0.91 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.15 2.00 6.09 -2.91 -0.02 1.99 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.14 2.17 6.41 -2.91 -0.02 2.15 16 41 H 0.40 7.53 6.19 -92.71 -0.57 6.95 16 42 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.34 11.01 7.28 -89.69 -0.65 10.36 16 48 H 0.11 3.11 8.14 -2.39 -0.02 3.10 16 49 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 51 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -74.22 412.88 0.81 -73.41 By element: Atomic # 1 Polarization: 50.81 SS G_CDS: -0.99 Total: 49.82 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 6.29 Total: 7.00 kcal Atomic # 7 Polarization: -115.51 SS G_CDS: -6.43 Total: -121.93 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -0.09 Total: -53.27 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -74.22 0.81 -73.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268689155.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.343 kcal (2) G-P(sol) polarization free energy of solvation -74.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds