Wall clock time and date at job start Wed Apr 1 2020 04:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47417 * 2 1 4 4 N 1.46505 * 109.47255 * 119.99896 * 2 1 3 5 5 C 1.36932 * 120.00108 * 274.99990 * 4 2 1 6 6 H 1.08007 * 119.99968 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00324 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99412 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00409 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47207 * 89.99956 * 9 7 5 11 11 H 1.48501 * 109.47147 * 209.99850 * 9 7 5 12 12 H 1.48502 * 109.47013 * 330.00067 * 9 7 5 13 13 C 1.53006 * 109.47383 * 240.00139 * 2 1 3 14 14 H 1.08996 * 110.88498 * 302.42567 * 13 2 1 15 15 C 1.55155 * 111.00243 * 66.35165 * 13 2 1 16 16 C 1.54334 * 103.01952 * 153.38765 * 15 13 2 17 17 N 1.47023 * 107.26254 * 338.13268 * 16 15 13 18 18 C 1.34781 * 125.64296 * 178.85283 * 17 16 15 19 19 O 1.21609 * 119.99442 * 179.69361 * 18 17 16 20 20 C 1.47395 * 120.00355 * 359.69741 * 18 17 16 21 21 C 1.37357 * 128.56440 * 359.97438 * 20 18 17 22 22 O 1.33490 * 106.34114 * 180.02562 * 21 20 18 23 23 N 1.20652 * 113.15654 * 359.74930 * 22 21 20 24 24 C 1.30013 * 112.30322 * 0.42649 * 23 22 21 25 25 C 1.50701 * 127.33447 * 179.85623 * 24 23 22 26 26 C 1.54887 * 110.48805 * 299.68580 * 25 24 23 27 27 C 1.54890 * 102.91108 * 156.52891 * 26 25 24 28 28 C 1.54463 * 104.10368 * 322.30112 * 27 26 25 29 29 C 1.53877 * 106.68421 * 23.34437 * 28 27 26 30 30 C 1.47416 * 108.70523 * 358.59049 * 17 16 15 31 31 H 1.08997 * 109.46594 * 300.00068 * 1 2 3 32 32 H 1.08994 * 109.46847 * 59.99857 * 1 2 3 33 33 H 1.09001 * 109.46936 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99491 * 95.00011 * 4 2 1 35 35 H 0.97003 * 119.99637 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.71783 * 271.94025 * 15 13 2 37 37 H 1.08999 * 110.72337 * 35.03276 * 15 13 2 38 38 H 1.09004 * 109.98370 * 218.66629 * 16 15 13 39 39 H 1.08996 * 109.78273 * 97.49331 * 16 15 13 40 40 H 1.07999 * 126.83018 * 0.04805 * 21 20 18 41 41 H 1.09006 * 110.53692 * 177.07570 * 25 24 23 42 42 H 1.09002 * 110.75856 * 274.93801 * 26 25 24 43 43 H 1.09006 * 110.75640 * 38.12787 * 26 25 24 44 44 H 1.09003 * 110.48855 * 80.83451 * 27 26 25 45 45 H 1.09003 * 110.48748 * 203.47148 * 27 26 25 46 46 H 1.08999 * 109.85715 * 264.10233 * 28 27 26 47 47 H 1.09003 * 110.15968 * 142.74863 * 28 27 26 48 48 H 1.08995 * 110.02951 * 240.87549 * 29 28 27 49 49 H 1.08998 * 110.07557 * 119.46051 * 29 28 27 50 50 H 1.09002 * 110.36545 * 143.19275 * 30 17 16 51 51 H 1.09005 * 110.37065 * 265.40700 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6114 -0.6619 3.5093 8 7 2.9244 -1.9390 3.4501 9 14 2.7892 0.2697 5.1185 10 1 1.5212 0.1785 5.8860 11 1 3.8934 -0.3236 5.9146 12 1 3.0942 1.6950 4.8342 13 6 2.0401 -0.7212 -1.2493 14 1 1.6548 -1.7398 -1.2944 15 6 1.6777 0.0689 -2.5345 16 6 2.7788 -0.3588 -3.5277 17 7 3.9165 -0.8464 -2.7343 18 6 5.0708 -1.3322 -3.2326 19 8 5.9498 -1.7037 -2.4788 20 6 5.2678 -1.4129 -4.6911 21 6 4.4028 -1.0473 -5.6935 22 8 5.0282 -1.3095 -6.8434 23 7 6.1327 -1.7698 -6.6886 24 6 6.4390 -1.9056 -5.4324 25 6 7.7230 -2.4466 -4.8580 26 6 7.9522 -3.9062 -5.3227 27 6 9.4860 -4.0751 -5.1892 28 6 10.0550 -2.7085 -5.6304 29 6 8.9340 -1.6752 -5.4222 30 6 3.5882 -0.7102 -1.3037 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 3.2471 -2.3965 4.2423 36 1 0.6922 -0.2201 -2.8998 37 1 1.7201 1.1426 -2.3519 38 1 3.0870 0.4942 -4.1323 39 1 2.4062 -1.1563 -4.1705 40 1 3.4137 -0.6303 -5.5750 41 1 7.7085 -2.3906 -3.7695 42 1 7.4283 -4.6058 -4.6714 43 1 7.6380 -4.0357 -6.3585 44 1 9.7582 -4.2840 -4.1546 45 1 9.8410 -4.8695 -5.8458 46 1 10.3366 -2.7470 -6.6827 47 1 10.9208 -2.4479 -5.0217 48 1 8.6716 -1.2123 -6.3734 49 1 9.2548 -0.9130 -4.7121 50 1 3.9936 -1.5503 -0.7398 51 1 3.9765 0.2305 -0.9132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271502012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:28 Heat of formation + Delta-G solvation = 27.420689 kcal Electronic energy + Delta-G solvation = -30930.520281 eV Core-core repulsion = 26832.862551 eV Total energy + Delta-G solvation = -4097.657730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.12195 -40.05771 -38.47517 -37.71780 -35.31736 -33.93568 -32.81804 -32.04454 -30.58494 -29.01778 -28.91774 -28.68907 -28.18118 -25.29926 -24.00601 -22.98930 -22.68654 -21.64640 -20.67562 -20.07445 -19.80367 -19.72436 -17.85723 -17.72018 -17.16705 -16.85957 -16.12437 -15.96259 -15.75116 -15.10208 -14.86920 -14.29722 -14.15374 -13.87323 -13.62793 -13.59481 -13.55589 -13.18392 -12.76662 -12.73021 -12.23453 -12.14331 -12.06803 -11.97788 -11.63249 -11.61456 -11.38828 -11.35643 -11.29378 -10.92771 -10.85692 -10.83831 -10.67414 -10.64454 -10.60901 -10.26003 -10.03307 -9.99971 -9.92818 -9.88110 -9.64534 -8.93073 -8.65406 -6.98407 -5.77013 -3.06423 0.86769 1.59422 2.58538 3.06981 3.13144 3.43216 3.48443 3.50453 3.76478 4.02604 4.34359 4.43452 4.48181 4.52802 4.58136 4.64397 4.73681 4.79696 4.86173 5.11838 5.16791 5.22898 5.28627 5.29409 5.34497 5.44406 5.46019 5.51471 5.57155 5.58363 5.70786 5.73423 5.79460 5.82656 5.85766 5.92799 5.95403 5.96631 6.11012 6.12807 6.19866 6.25097 6.30434 6.33723 6.49996 6.57770 6.80350 7.02727 7.44936 7.68941 7.98451 8.10700 8.40797 9.52314 10.08379 10.42653 11.45366 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.002514 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.146369 B =11134.062003 C =12872.004207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.724 5.724 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.124 4.124 16 C 0.087 3.913 17 N -0.611 5.611 18 C 0.604 3.396 19 O -0.523 6.523 20 C -0.241 4.241 21 C -0.022 4.022 22 O 0.095 5.905 23 N -0.356 5.356 24 C 0.082 3.918 25 C -0.024 4.024 26 C -0.114 4.114 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.115 4.115 30 C 0.123 3.877 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.046 0.954 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.230 0.770 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.087 0.913 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 1.050 -23.415 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.366 5.366 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.162 4.162 16 C -0.036 4.036 17 N -0.345 5.345 18 C 0.392 3.608 19 O -0.400 6.400 20 C -0.249 4.249 21 C -0.104 4.104 22 O 0.035 5.965 23 N -0.063 5.063 24 C -0.080 4.080 25 C -0.043 4.043 26 C -0.152 4.152 27 C -0.161 4.161 28 C -0.160 4.160 29 C -0.154 4.154 30 C 0.002 3.998 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.246 0.754 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.085 0.915 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.024 0.703 -24.045 24.574 hybrid contribution -0.390 0.348 1.724 1.801 sum 4.633 1.051 -22.322 22.822 Atomic orbital electron populations 1.22443 0.99050 1.00913 1.00018 1.20156 0.91939 0.95151 0.85310 0.93265 1.42416 1.78164 1.10729 1.05257 1.19183 1.36784 0.93820 0.87270 0.91234 1.24733 1.02066 0.95953 0.98036 1.69659 1.50685 1.08645 1.28867 0.86227 0.77262 0.78828 0.84078 1.21803 1.21800 1.20791 1.22690 0.93936 1.00393 0.95171 0.89964 1.22688 0.97424 1.01330 0.94768 1.22376 0.87433 0.98378 0.95379 1.48388 1.14738 1.62113 1.09212 1.16420 0.81361 0.77916 0.85108 1.90816 1.41424 1.48629 1.59161 1.22371 0.96190 1.10840 0.95467 1.27026 1.00124 0.98924 0.84332 1.84579 1.21007 1.59138 1.31769 1.73593 0.97212 1.16005 1.19456 1.24698 0.97170 0.98659 0.87522 1.20717 0.86900 0.94818 1.01907 1.22554 0.96508 0.94632 1.01507 1.22380 0.94792 0.97135 1.01770 1.22145 0.97878 0.94632 1.01308 1.22206 0.93920 0.98073 1.01157 1.22315 0.95212 1.03482 0.78838 0.92719 0.94409 0.93494 0.78246 0.93489 0.89755 0.90068 0.91219 0.91247 0.75384 0.86424 0.91017 0.91195 0.91121 0.91393 0.91803 0.91546 0.91487 0.91234 0.89461 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.34 37.16 0.35 -2.28 16 2 C 0.18 3.26 2.41 -67.93 -0.16 3.10 16 3 H 0.05 0.89 8.05 -51.93 -0.42 0.47 16 4 N -0.72 -17.02 4.82 -53.42 -0.26 -17.28 16 5 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 6 H 0.07 1.81 7.83 -52.48 -0.41 1.39 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 9 Si 0.90 22.18 29.55 -169.99 -5.02 17.16 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.10 -1.45 2.63 -88.47 -0.23 -1.68 16 14 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.12 -1.20 5.59 -24.89 -0.14 -1.34 16 16 C 0.09 0.78 5.04 -3.06 -0.02 0.76 16 17 N -0.61 -8.24 3.33 -171.79 -0.57 -8.81 16 18 C 0.60 9.18 7.85 -12.53 -0.10 9.08 16 19 O -0.52 -9.92 15.56 5.27 0.08 -9.84 16 20 C -0.24 -3.00 6.41 -102.90 -0.66 -3.66 16 21 C -0.02 -0.20 10.83 30.41 0.33 0.13 16 22 O 0.09 0.97 11.06 18.66 0.21 1.18 16 23 N -0.36 -4.33 11.75 34.78 0.41 -3.92 16 24 C 0.08 1.04 6.09 -79.77 -0.49 0.56 16 25 C -0.02 -0.29 3.31 -90.11 -0.30 -0.59 16 26 C -0.11 -1.20 6.31 -24.74 -0.16 -1.35 16 27 C -0.12 -1.09 6.85 -24.97 -0.17 -1.26 16 28 C -0.12 -1.07 6.81 -25.51 -0.17 -1.24 16 29 C -0.12 -1.20 6.36 -25.61 -0.16 -1.37 16 30 C 0.12 1.97 6.08 -2.53 -0.02 1.96 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.04 0.47 7.50 -51.93 -0.39 0.09 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.38 9.76 7.80 -40.82 -0.32 9.45 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 37 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 38 H 0.07 0.46 7.13 -51.93 -0.37 0.09 16 39 H 0.07 0.47 6.92 -51.93 -0.36 0.11 16 40 H 0.23 1.10 4.83 -52.49 -0.25 0.84 16 41 H 0.12 1.65 6.38 -51.93 -0.33 1.32 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.74 8.04 -51.93 -0.42 0.33 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.72 7.63 -51.93 -0.40 0.33 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.69 8.04 -51.93 -0.42 1.27 16 51 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -32.49 403.70 -8.97 -41.46 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -8.28 Total: 7.16 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.34 Total: -6.14 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.30 Total: -57.06 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.29 Total: -8.66 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.49 -8.97 -41.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271502012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.878 kcal (2) G-P(sol) polarization free energy of solvation -32.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds