Wall clock time and date at job start Wed Apr 1 2020 04:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47417 * 2 1 4 4 N 1.46505 * 109.47255 * 119.99896 * 2 1 3 5 5 C 1.36932 * 120.00108 * 274.99990 * 4 2 1 6 6 H 1.08007 * 119.99968 * 0.02562 * 5 4 2 7 7 C 1.38811 * 120.00324 * 179.97438 * 5 4 2 8 8 N 1.31626 * 119.99412 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00409 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47207 * 89.99956 * 9 7 5 11 11 H 1.48501 * 109.47147 * 209.99850 * 9 7 5 12 12 H 1.48502 * 109.47013 * 330.00067 * 9 7 5 13 13 C 1.53006 * 109.47383 * 240.00139 * 2 1 3 14 14 H 1.08996 * 110.88498 * 302.42567 * 13 2 1 15 15 C 1.55155 * 111.00243 * 66.35165 * 13 2 1 16 16 C 1.54334 * 103.01952 * 153.38765 * 15 13 2 17 17 N 1.47023 * 107.26254 * 338.13268 * 16 15 13 18 18 C 1.34781 * 125.64296 * 178.85283 * 17 16 15 19 19 O 1.21609 * 119.99442 * 179.69361 * 18 17 16 20 20 C 1.47395 * 120.00355 * 359.69741 * 18 17 16 21 21 C 1.37357 * 128.56440 * 359.97438 * 20 18 17 22 22 O 1.33490 * 106.34114 * 180.02562 * 21 20 18 23 23 N 1.20652 * 113.15654 * 359.74930 * 22 21 20 24 24 C 1.30013 * 112.30322 * 0.42649 * 23 22 21 25 25 C 1.50701 * 127.33447 * 179.85623 * 24 23 22 26 26 C 1.54887 * 110.48805 * 299.68580 * 25 24 23 27 27 C 1.54890 * 102.91108 * 156.52891 * 26 25 24 28 28 C 1.54463 * 104.10368 * 322.30112 * 27 26 25 29 29 C 1.53877 * 106.68421 * 23.34437 * 28 27 26 30 30 C 1.47416 * 108.70523 * 358.59049 * 17 16 15 31 31 H 1.08997 * 109.46594 * 300.00068 * 1 2 3 32 32 H 1.08994 * 109.46847 * 59.99857 * 1 2 3 33 33 H 1.09001 * 109.46936 * 179.97438 * 1 2 3 34 34 H 0.97005 * 119.99491 * 95.00011 * 4 2 1 35 35 H 0.97003 * 119.99637 * 180.02562 * 8 7 5 36 36 H 1.09006 * 110.71783 * 271.94025 * 15 13 2 37 37 H 1.08999 * 110.72337 * 35.03276 * 15 13 2 38 38 H 1.09004 * 109.98370 * 218.66629 * 16 15 13 39 39 H 1.08996 * 109.78273 * 97.49331 * 16 15 13 40 40 H 1.07999 * 126.83018 * 0.04805 * 21 20 18 41 41 H 1.09006 * 110.53692 * 177.07570 * 25 24 23 42 42 H 1.09002 * 110.75856 * 274.93801 * 26 25 24 43 43 H 1.09006 * 110.75640 * 38.12787 * 26 25 24 44 44 H 1.09003 * 110.48855 * 80.83451 * 27 26 25 45 45 H 1.09003 * 110.48748 * 203.47148 * 27 26 25 46 46 H 1.08999 * 109.85715 * 264.10233 * 28 27 26 47 47 H 1.09003 * 110.15968 * 142.74863 * 28 27 26 48 48 H 1.08995 * 110.02951 * 240.87549 * 29 28 27 49 49 H 1.08998 * 110.07557 * 119.46051 * 29 28 27 50 50 H 1.09002 * 110.36545 * 143.19275 * 30 17 16 51 51 H 1.09005 * 110.37065 * 265.40700 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1492 -0.0075 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6114 -0.6619 3.5093 8 7 2.9244 -1.9390 3.4501 9 14 2.7892 0.2697 5.1185 10 1 1.5212 0.1785 5.8860 11 1 3.8934 -0.3236 5.9146 12 1 3.0942 1.6950 4.8342 13 6 2.0401 -0.7212 -1.2493 14 1 1.6548 -1.7398 -1.2944 15 6 1.6777 0.0689 -2.5345 16 6 2.7788 -0.3588 -3.5277 17 7 3.9165 -0.8464 -2.7343 18 6 5.0708 -1.3322 -3.2326 19 8 5.9498 -1.7037 -2.4788 20 6 5.2678 -1.4129 -4.6911 21 6 4.4028 -1.0473 -5.6935 22 8 5.0282 -1.3095 -6.8434 23 7 6.1327 -1.7698 -6.6886 24 6 6.4390 -1.9056 -5.4324 25 6 7.7230 -2.4466 -4.8580 26 6 7.9522 -3.9062 -5.3227 27 6 9.4860 -4.0751 -5.1892 28 6 10.0550 -2.7085 -5.6304 29 6 8.9340 -1.6752 -5.4222 30 6 3.5882 -0.7102 -1.3037 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 2.2491 -1.6318 1.1526 35 1 3.2471 -2.3965 4.2423 36 1 0.6922 -0.2201 -2.8998 37 1 1.7201 1.1426 -2.3519 38 1 3.0870 0.4942 -4.1323 39 1 2.4062 -1.1563 -4.1705 40 1 3.4137 -0.6303 -5.5750 41 1 7.7085 -2.3906 -3.7695 42 1 7.4283 -4.6058 -4.6714 43 1 7.6380 -4.0357 -6.3585 44 1 9.7582 -4.2840 -4.1546 45 1 9.8410 -4.8695 -5.8458 46 1 10.3366 -2.7470 -6.6827 47 1 10.9208 -2.4479 -5.0217 48 1 8.6716 -1.2123 -6.3734 49 1 9.2548 -0.9130 -4.7121 50 1 3.9936 -1.5503 -0.7398 51 1 3.9765 0.2305 -0.9132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271502012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:27 Heat of formation + Delta-G solvation = 7.376302 kcal Electronic energy + Delta-G solvation = -30931.389471 eV Core-core repulsion = 26832.862551 eV Total energy + Delta-G solvation = -4098.526920 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -46.01950 -41.17422 -39.36931 -38.89364 -36.83306 -34.88275 -34.33927 -33.22720 -31.91180 -30.06098 -29.92110 -29.72810 -29.45303 -26.36638 -25.85216 -23.93600 -23.66793 -22.85846 -21.43819 -21.09008 -21.05566 -20.69887 -19.22076 -18.74575 -18.47358 -17.93518 -17.34168 -16.87717 -16.78644 -16.51825 -16.01284 -15.65863 -15.44707 -15.15743 -14.83667 -14.55403 -14.44053 -14.39320 -14.16893 -13.90547 -13.57235 -13.38563 -13.10233 -12.95731 -12.86633 -12.80413 -12.57162 -12.43686 -12.32943 -12.20656 -12.14621 -12.07865 -12.01934 -11.77654 -11.70938 -11.52080 -11.41654 -11.35913 -11.13916 -10.92574 -10.92019 -10.77850 -9.76000 -8.97155 -7.91643 -5.18720 0.02130 0.66233 1.46411 1.47803 1.55702 1.61999 2.04232 2.21737 2.57253 2.86678 3.17304 3.39631 3.44439 3.61058 3.61859 3.65669 3.82183 3.84874 3.88365 3.90698 4.20307 4.27514 4.33430 4.41393 4.42273 4.48901 4.51377 4.54789 4.59839 4.65721 4.68335 4.70791 4.76332 4.84822 4.88057 4.89757 4.98702 4.98761 5.13014 5.13802 5.15678 5.17286 5.23786 5.31902 5.35223 5.39372 5.44526 5.55341 5.68731 6.30842 6.39285 6.96486 7.16739 7.36675 8.15469 8.35359 9.32017 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.002514 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.146369 B =11134.062003 C =12872.004207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.047 0.953 4 N -0.739 5.739 5 C -0.229 4.229 6 H 0.077 0.923 7 C -0.080 4.080 8 N -0.971 5.971 9 Si 0.966 3.034 10 H -0.287 1.287 11 H -0.302 1.302 12 H -0.269 1.269 13 C -0.093 4.093 14 H 0.077 0.923 15 C -0.111 4.111 16 C 0.076 3.924 17 N -0.608 5.608 18 C 0.598 3.402 19 O -0.580 6.580 20 C -0.274 4.274 21 C 0.024 3.976 22 O 0.105 5.895 23 N -0.366 5.366 24 C 0.066 3.934 25 C -0.030 4.030 26 C -0.111 4.111 27 C -0.121 4.121 28 C -0.119 4.119 29 C -0.112 4.112 30 C 0.128 3.872 31 H 0.031 0.969 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.369 0.631 35 H 0.247 0.753 36 H 0.119 0.881 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.278 0.722 41 H 0.088 0.912 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.038 0.962 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 2.850 -26.826 27.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.070 3.930 3 H 0.065 0.935 4 N -0.379 5.379 5 C -0.361 4.361 6 H 0.095 0.905 7 C -0.272 4.272 8 N -0.623 5.623 9 Si 0.796 3.204 10 H -0.215 1.215 11 H -0.229 1.229 12 H -0.194 1.194 13 C -0.113 4.113 14 H 0.096 0.904 15 C -0.149 4.149 16 C -0.045 4.045 17 N -0.340 5.340 18 C 0.388 3.612 19 O -0.462 6.462 20 C -0.282 4.282 21 C -0.058 4.058 22 O 0.045 5.955 23 N -0.072 5.072 24 C -0.096 4.096 25 C -0.050 4.050 26 C -0.149 4.149 27 C -0.158 4.158 28 C -0.156 4.156 29 C -0.150 4.150 30 C 0.005 3.995 31 H 0.051 0.949 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.201 0.799 35 H 0.056 0.944 36 H 0.137 0.863 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.293 0.707 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.085 0.915 45 H 0.104 0.896 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.057 0.943 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.959 2.563 -27.527 27.804 hybrid contribution 0.161 -0.145 2.703 2.711 sum 3.120 2.418 -24.824 25.136 Atomic orbital electron populations 1.22273 0.96862 1.00918 1.01203 1.20453 0.93244 0.94786 0.84560 0.93453 1.42676 1.78460 1.10253 1.06465 1.19589 1.34108 0.94108 0.88267 0.90512 1.25502 1.03481 0.96826 1.01394 1.69824 1.53057 1.10280 1.29129 0.85238 0.76716 0.78135 0.80324 1.21460 1.22891 1.19384 1.22505 0.91885 1.00738 0.96190 0.90414 1.22737 0.99355 1.01143 0.91634 1.22840 0.85420 1.00844 0.95358 1.48403 1.15591 1.61548 1.08487 1.16848 0.81050 0.77136 0.86138 1.90785 1.43455 1.51190 1.60734 1.22101 0.97727 1.14024 0.94348 1.27707 1.00300 0.95384 0.82384 1.84571 1.20435 1.58386 1.32074 1.73596 0.98062 1.16602 1.18902 1.24826 0.97623 0.99145 0.88002 1.20667 0.87867 0.96153 1.00263 1.22524 0.97760 0.93481 1.01116 1.22394 0.93475 0.97885 1.02065 1.22150 0.97400 0.93787 1.02276 1.22183 0.93916 0.98297 1.00630 1.22002 0.96759 1.00320 0.80421 0.94948 0.89729 0.94073 0.79933 0.94379 0.86255 0.89001 0.87573 0.87869 0.70737 0.89387 0.91987 0.91041 0.91482 0.89635 0.90529 0.90704 0.91649 0.91841 0.94347 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.34 71.98 0.67 -3.86 16 2 C 0.18 6.12 2.41 44.99 0.11 6.23 16 3 H 0.05 1.66 8.05 -2.39 -0.02 1.64 16 4 N -0.74 -35.68 4.82 -322.92 -1.56 -37.23 16 5 C -0.23 -12.42 9.93 84.03 0.83 -11.59 16 6 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 8 N -0.97 -60.58 13.06 21.65 0.28 -60.29 16 9 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 C -0.09 -2.52 2.63 -9.40 -0.02 -2.55 16 14 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 15 C -0.11 -1.60 5.59 31.79 0.18 -1.42 16 16 C 0.08 0.98 5.04 86.73 0.44 1.42 16 17 N -0.61 -15.87 3.33 -815.67 -2.71 -18.58 16 18 C 0.60 18.58 7.85 86.65 0.68 19.26 16 19 O -0.58 -23.95 15.56 -4.06 -0.06 -24.01 16 20 C -0.27 -6.51 6.41 -18.75 -0.12 -6.63 16 21 C 0.02 0.32 10.83 67.61 0.73 1.06 16 22 O 0.10 1.80 11.06 77.02 0.85 2.65 16 23 N -0.37 -8.29 11.75 -44.79 -0.53 -8.82 16 24 C 0.07 1.68 6.09 45.16 0.28 1.95 16 25 C -0.03 -0.76 3.31 -10.47 -0.03 -0.80 16 26 C -0.11 -2.40 6.31 31.88 0.20 -2.20 16 27 C -0.12 -2.11 6.85 31.74 0.22 -1.90 16 28 C -0.12 -2.00 6.81 31.39 0.21 -1.79 16 29 C -0.11 -2.39 6.36 31.32 0.20 -2.19 16 30 C 0.13 4.26 6.08 86.86 0.53 4.79 16 31 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.72 7.50 -2.39 -0.02 1.71 16 33 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.37 19.76 7.80 -92.70 -0.72 19.04 16 35 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 36 H 0.12 1.02 8.13 -2.38 -0.02 1.00 16 37 H 0.09 1.21 8.01 -2.39 -0.02 1.19 16 38 H 0.11 0.70 7.13 -2.38 -0.02 0.69 16 39 H 0.10 0.72 6.92 -2.39 -0.02 0.70 16 40 H 0.28 0.72 4.83 -2.91 -0.01 0.71 16 41 H 0.09 2.76 6.38 -2.38 -0.02 2.75 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.07 1.51 8.04 -2.38 -0.02 1.49 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.06 1.40 7.63 -2.39 -0.02 1.38 16 49 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 51 H 0.06 2.03 8.04 -2.38 -0.02 2.01 16 Total: -1.00 -78.62 403.70 4.08 -74.54 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.22 Total: 27.37 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 5.56 Total: -4.37 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -4.51 Total: -124.92 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.79 Total: -21.36 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -78.62 4.08 -74.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271502012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.914 kcal (2) G-P(sol) polarization free energy of solvation -78.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds