Wall clock time and date at job start Wed Apr 1 2020 04:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47416 * 2 1 4 4 N 1.46499 * 109.47197 * 120.00587 * 2 1 3 5 5 C 1.36937 * 119.99931 * 274.99659 * 4 2 1 6 6 H 1.07999 * 119.99661 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00221 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99833 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47026 * 90.00315 * 9 7 5 11 11 H 1.48500 * 109.47199 * 209.99942 * 9 7 5 12 12 H 1.48498 * 109.47360 * 330.00264 * 9 7 5 13 13 C 1.53003 * 109.46977 * 240.00445 * 2 1 3 14 14 H 1.08997 * 110.91482 * 304.74302 * 13 2 1 15 15 C 1.55155 * 111.00405 * 180.83933 * 13 2 1 16 16 C 1.54319 * 102.94506 * 206.42221 * 15 13 2 17 17 N 1.47023 * 107.40249 * 22.11858 * 16 15 13 18 18 C 1.34769 * 125.65197 * 181.10090 * 17 16 15 19 19 O 1.21606 * 120.00298 * 180.02562 * 18 17 16 20 20 C 1.47399 * 119.99871 * 0.02661 * 18 17 16 21 21 C 1.37356 * 128.56508 * 359.67463 * 20 18 17 22 22 O 1.33497 * 106.33869 * 179.85762 * 21 20 18 23 23 N 1.20655 * 113.15816 * 0.45166 * 22 21 20 24 24 C 1.30007 * 112.30014 * 359.71808 * 23 22 21 25 25 C 1.50706 * 127.33240 * 180.02562 * 24 23 22 26 26 C 1.54270 * 110.03363 * 57.86807 * 25 24 23 27 27 C 1.54966 * 104.16030 * 217.13722 * 26 25 24 28 28 C 1.54891 * 102.77811 * 37.88208 * 27 26 25 29 29 C 1.53869 * 110.03530 * 300.64887 * 25 24 23 30 30 C 1.47750 * 108.52584 * 1.18040 * 17 16 15 31 31 H 1.09007 * 109.47326 * 174.74334 * 1 2 3 32 32 H 1.08996 * 109.47317 * 294.74508 * 1 2 3 33 33 H 1.09007 * 109.47183 * 54.74619 * 1 2 3 34 34 H 0.96997 * 119.99863 * 94.99893 * 4 2 1 35 35 H 0.96991 * 120.00297 * 180.02562 * 8 7 5 36 36 H 1.09010 * 110.71805 * 88.06152 * 15 13 2 37 37 H 1.08995 * 110.72214 * 324.79039 * 15 13 2 38 38 H 1.09003 * 109.88467 * 141.61126 * 16 15 13 39 39 H 1.09002 * 109.88726 * 262.62105 * 16 15 13 40 40 H 1.07994 * 126.82959 * 359.97438 * 21 20 18 41 41 H 1.09002 * 110.01771 * 179.25415 * 25 24 23 42 42 H 1.09006 * 110.48173 * 335.77678 * 26 25 24 43 43 H 1.08998 * 110.49086 * 98.41993 * 26 25 24 44 44 H 1.08996 * 110.71718 * 279.57346 * 27 26 25 45 45 H 1.08998 * 110.92163 * 156.28957 * 27 26 25 46 46 H 1.09000 * 110.48835 * 203.40514 * 28 27 26 47 47 H 1.08998 * 110.59745 * 80.81637 * 28 27 26 48 48 H 1.09005 * 110.02983 * 238.57214 * 29 25 24 49 49 H 1.09004 * 110.03109 * 359.94961 * 29 25 24 50 50 H 1.09004 * 110.28678 * 216.94562 * 30 17 16 51 51 H 1.08999 * 110.52829 * 94.67451 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8919 1.0401 2.4243 7 6 2.6124 -0.6620 3.5089 8 7 2.7377 -0.0056 4.6428 9 14 3.0566 -2.4744 3.4249 10 1 4.4892 -2.6166 3.0604 11 1 2.8176 -3.1045 4.7482 12 1 2.2162 -3.1430 2.3993 13 6 2.0399 -0.7212 -1.2493 14 1 1.6226 -1.7258 -1.3163 15 6 3.5908 -0.7603 -1.2747 16 6 3.9096 -0.8549 -2.7817 17 7 2.7419 -0.3392 -3.5113 18 6 2.6194 -0.2737 -4.8518 19 8 1.6038 0.1741 -5.3485 20 6 3.7166 -0.7449 -5.7160 21 6 4.9307 -1.2715 -5.3481 22 8 5.5781 -1.5506 -6.4817 23 7 4.9477 -1.2665 -7.4704 24 6 3.7842 -0.7612 -7.1854 25 6 2.7292 -0.2926 -8.1542 26 6 2.3244 -1.4471 -9.0940 27 6 2.0944 -0.7586 -10.4631 28 6 3.2130 0.3122 -10.5003 29 6 3.2936 0.8257 -9.0479 30 6 1.7286 0.0959 -2.5281 31 1 -0.3634 -1.0234 -0.0942 32 1 -0.3634 0.4301 0.9333 33 1 -0.3634 0.5932 -0.8392 34 1 2.2490 -1.6319 1.1524 35 1 3.0617 -0.4627 5.4345 36 1 3.9631 -1.6379 -0.7460 37 1 4.0067 0.1528 -0.8491 38 1 4.7875 -0.2518 -3.0135 39 1 4.0902 -1.8937 -3.0580 40 1 5.2893 -1.4302 -4.3418 41 1 1.8569 0.0690 -7.6098 42 1 3.1281 -2.1800 -9.1660 43 1 1.4063 -1.9194 -8.7445 44 1 1.1106 -0.2908 -10.4990 45 1 2.2127 -1.4694 -11.2809 46 1 2.9428 1.1227 -11.1771 47 1 4.1611 -0.1341 -10.8002 48 1 2.6946 1.7297 -8.9377 49 1 4.3303 1.0301 -8.7803 50 1 0.7267 -0.1344 -2.8908 51 1 1.8231 1.1633 -2.3286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271502013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:31 Heat of formation + Delta-G solvation = 31.178898 kcal Electronic energy + Delta-G solvation = -30843.342690 eV Core-core repulsion = 26745.847929 eV Total energy + Delta-G solvation = -4097.494762 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.20727 -40.21632 -38.62541 -37.88384 -35.52653 -34.01071 -32.86482 -32.06313 -30.74751 -29.78703 -29.04548 -29.02499 -27.84585 -25.65297 -23.94733 -23.04630 -22.53705 -21.57213 -20.98920 -20.22935 -19.96295 -19.79697 -17.95062 -17.85094 -17.53891 -17.06208 -16.34080 -16.05111 -15.86969 -15.29331 -14.96011 -14.35552 -14.15092 -13.91530 -13.85475 -13.70053 -13.67331 -13.21873 -12.90846 -12.68139 -12.56000 -12.36880 -12.20443 -12.11774 -11.91919 -11.60672 -11.50759 -11.42986 -11.36583 -11.07779 -10.98353 -10.91710 -10.90062 -10.69185 -10.61188 -10.34024 -10.19354 -10.12971 -10.02752 -10.00251 -9.64285 -9.00647 -8.86272 -7.34612 -5.82554 -3.18642 0.76460 1.50594 2.44699 2.94422 2.96210 3.30801 3.32930 3.40250 3.65960 3.91458 4.22127 4.31854 4.39456 4.49651 4.52753 4.55186 4.63879 4.70090 4.82353 4.98934 5.04827 5.11199 5.19329 5.20358 5.21865 5.33683 5.35288 5.37834 5.46807 5.50026 5.55924 5.58720 5.65682 5.69390 5.73664 5.80200 5.84038 5.86933 5.99802 6.00630 6.01719 6.09061 6.11873 6.24542 6.35035 6.42127 6.71189 6.94956 7.24975 7.86722 7.93023 7.93972 8.36160 9.14298 9.86560 10.06026 11.35701 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.002162 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.747900 B =12947.597058 C =13652.060581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.190 3.810 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.081 0.919 15 C -0.118 4.118 16 C 0.084 3.916 17 N -0.609 5.609 18 C 0.609 3.391 19 O -0.531 6.531 20 C -0.247 4.247 21 C -0.017 4.017 22 O 0.096 5.904 23 N -0.355 5.355 24 C 0.081 3.919 25 C -0.023 4.023 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.114 4.114 30 C 0.118 3.882 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.041 0.959 34 H 0.360 0.640 35 H 0.259 0.741 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.231 0.769 41 H 0.115 0.885 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.081 0.919 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -2.537 -27.126 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.371 4.371 6 H 0.108 0.892 7 C -0.191 4.191 8 N -0.581 5.581 9 Si 0.713 3.287 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.100 0.900 15 C -0.156 4.156 16 C -0.039 4.039 17 N -0.343 5.343 18 C 0.397 3.603 19 O -0.409 6.409 20 C -0.254 4.254 21 C -0.098 4.098 22 O 0.036 5.964 23 N -0.061 5.061 24 C -0.082 4.082 25 C -0.042 4.042 26 C -0.153 4.153 27 C -0.161 4.161 28 C -0.160 4.160 29 C -0.152 4.152 30 C -0.004 4.004 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.193 0.807 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.247 0.753 41 H 0.133 0.867 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.083 0.917 50 H 0.099 0.901 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.389 -2.387 -28.388 28.689 hybrid contribution -0.053 -1.203 1.037 1.589 sum 3.336 -3.590 -27.350 27.786 Atomic orbital electron populations 1.22467 0.98657 1.00670 1.01094 1.20098 0.92046 0.95470 0.84328 0.92271 1.42729 1.79862 1.09298 1.06991 1.19038 1.36926 0.95518 0.85666 0.89194 1.24669 1.01506 0.97385 0.95565 1.69691 1.52502 1.35595 1.00279 0.86579 0.78334 0.86858 0.76883 1.21099 1.21841 1.20371 1.22750 0.95422 1.00032 0.94526 0.90017 1.22617 0.96298 1.04617 0.92039 1.22489 0.88720 0.98586 0.94112 1.48395 1.19265 1.62263 1.04329 1.16395 0.85376 0.78460 0.80032 1.90774 1.30000 1.46718 1.73418 1.22299 0.97437 1.11593 0.94100 1.27100 0.92011 0.96863 0.93874 1.84601 1.39921 1.61668 1.10187 1.73615 1.07139 1.17278 1.08063 1.24759 0.93747 0.98168 0.91520 1.20502 0.94655 0.95879 0.93192 1.22455 1.01632 0.96801 0.94409 1.22497 0.98999 0.97825 0.96737 1.22355 0.99078 0.98452 0.96160 1.22187 1.01248 0.97444 0.94323 1.22400 0.91981 0.99134 0.86905 0.93671 0.92007 0.94017 0.80717 0.93045 0.89604 0.89325 0.90998 0.91183 0.75286 0.86743 0.91249 0.91056 0.91137 0.91337 0.91465 0.91504 0.90948 0.91730 0.90051 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.29 37.16 0.35 -2.36 16 2 C 0.19 3.18 2.42 -67.93 -0.16 3.02 16 3 H 0.06 1.03 7.99 -51.93 -0.42 0.62 16 4 N -0.75 -15.78 4.56 -53.43 -0.24 -16.02 16 5 C -0.24 -6.33 10.41 -15.06 -0.16 -6.49 16 6 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 7 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 8 N -0.93 -28.24 13.97 55.49 0.78 -27.46 16 9 Si 0.88 20.91 27.73 -169.99 -4.71 16.20 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 13 C -0.11 -1.40 2.62 -88.47 -0.23 -1.63 16 14 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.12 -1.36 6.07 -24.90 -0.15 -1.51 16 16 C 0.08 0.76 5.04 -3.07 -0.02 0.74 16 17 N -0.61 -7.09 3.34 -171.53 -0.57 -7.67 16 18 C 0.61 7.98 7.85 -12.53 -0.10 7.88 16 19 O -0.53 -8.43 15.55 5.27 0.08 -8.35 16 20 C -0.25 -2.78 6.41 -102.89 -0.66 -3.44 16 21 C -0.02 -0.14 10.83 30.41 0.33 0.19 16 22 O 0.10 0.94 11.06 18.64 0.21 1.15 16 23 N -0.35 -4.05 11.84 34.78 0.41 -3.64 16 24 C 0.08 0.93 5.78 -79.77 -0.46 0.47 16 25 C -0.02 -0.24 3.36 -90.65 -0.30 -0.55 16 26 C -0.11 -1.04 6.36 -25.03 -0.16 -1.20 16 27 C -0.12 -0.91 6.91 -24.70 -0.17 -1.08 16 28 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 29 C -0.11 -1.04 6.45 -25.62 -0.17 -1.20 16 30 C 0.12 1.45 5.77 -2.35 -0.01 1.44 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 34 H 0.36 7.51 5.66 -40.82 -0.23 7.27 16 35 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 36 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.09 1.12 8.04 -51.93 -0.42 0.70 16 38 H 0.07 0.51 7.09 -51.93 -0.37 0.15 16 39 H 0.07 0.50 6.95 -51.93 -0.36 0.14 16 40 H 0.23 1.13 4.83 -52.49 -0.25 0.88 16 41 H 0.11 1.37 6.33 -51.93 -0.33 1.04 16 42 H 0.07 0.68 7.72 -51.93 -0.40 0.28 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 50 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 51 H 0.08 0.94 7.97 -51.93 -0.41 0.52 16 LS Contribution 400.52 15.07 6.04 6.04 Total: -1.00 -32.00 400.52 -8.59 -40.59 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.23 Total: 5.99 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.34 Total: -6.82 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.37 Total: -54.79 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.29 Total: -7.20 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.71 Total: 16.20 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.00 -8.59 -40.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271502013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.769 kcal (2) G-P(sol) polarization free energy of solvation -32.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds