Wall clock time and date at job start Wed Apr 1 2020 04:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47416 * 2 1 4 4 N 1.46499 * 109.47197 * 120.00587 * 2 1 3 5 5 C 1.36937 * 119.99931 * 274.99659 * 4 2 1 6 6 H 1.07999 * 119.99661 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00137 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00221 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99833 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.47026 * 90.00315 * 9 7 5 11 11 H 1.48500 * 109.47199 * 209.99942 * 9 7 5 12 12 H 1.48498 * 109.47360 * 330.00264 * 9 7 5 13 13 C 1.53003 * 109.46977 * 240.00445 * 2 1 3 14 14 H 1.08997 * 110.91482 * 304.74302 * 13 2 1 15 15 C 1.55155 * 111.00405 * 180.83933 * 13 2 1 16 16 C 1.54319 * 102.94506 * 206.42221 * 15 13 2 17 17 N 1.47023 * 107.40249 * 22.11858 * 16 15 13 18 18 C 1.34769 * 125.65197 * 181.10090 * 17 16 15 19 19 O 1.21606 * 120.00298 * 180.02562 * 18 17 16 20 20 C 1.47399 * 119.99871 * 0.02661 * 18 17 16 21 21 C 1.37356 * 128.56508 * 359.67463 * 20 18 17 22 22 O 1.33497 * 106.33869 * 179.85762 * 21 20 18 23 23 N 1.20655 * 113.15816 * 0.45166 * 22 21 20 24 24 C 1.30007 * 112.30014 * 359.71808 * 23 22 21 25 25 C 1.50706 * 127.33240 * 180.02562 * 24 23 22 26 26 C 1.54270 * 110.03363 * 57.86807 * 25 24 23 27 27 C 1.54966 * 104.16030 * 217.13722 * 26 25 24 28 28 C 1.54891 * 102.77811 * 37.88208 * 27 26 25 29 29 C 1.53869 * 110.03530 * 300.64887 * 25 24 23 30 30 C 1.47750 * 108.52584 * 1.18040 * 17 16 15 31 31 H 1.09007 * 109.47326 * 174.74334 * 1 2 3 32 32 H 1.08996 * 109.47317 * 294.74508 * 1 2 3 33 33 H 1.09007 * 109.47183 * 54.74619 * 1 2 3 34 34 H 0.96997 * 119.99863 * 94.99893 * 4 2 1 35 35 H 0.96991 * 120.00297 * 180.02562 * 8 7 5 36 36 H 1.09010 * 110.71805 * 88.06152 * 15 13 2 37 37 H 1.08995 * 110.72214 * 324.79039 * 15 13 2 38 38 H 1.09003 * 109.88467 * 141.61126 * 16 15 13 39 39 H 1.09002 * 109.88726 * 262.62105 * 16 15 13 40 40 H 1.07994 * 126.82959 * 359.97438 * 21 20 18 41 41 H 1.09002 * 110.01771 * 179.25415 * 25 24 23 42 42 H 1.09006 * 110.48173 * 335.77678 * 26 25 24 43 43 H 1.08998 * 110.49086 * 98.41993 * 26 25 24 44 44 H 1.08996 * 110.71718 * 279.57346 * 27 26 25 45 45 H 1.08998 * 110.92163 * 156.28957 * 27 26 25 46 46 H 1.09000 * 110.48835 * 203.40514 * 28 27 26 47 47 H 1.08998 * 110.59745 * 80.81637 * 28 27 26 48 48 H 1.09005 * 110.02983 * 238.57214 * 29 25 24 49 49 H 1.09004 * 110.03109 * 359.94961 * 29 25 24 50 50 H 1.09004 * 110.28678 * 216.94562 * 30 17 16 51 51 H 1.08999 * 110.52829 * 94.67451 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1492 -0.0077 2.3757 6 1 1.8919 1.0401 2.4243 7 6 2.6124 -0.6620 3.5089 8 7 2.7377 -0.0056 4.6428 9 14 3.0566 -2.4744 3.4249 10 1 4.4892 -2.6166 3.0604 11 1 2.8176 -3.1045 4.7482 12 1 2.2162 -3.1430 2.3993 13 6 2.0399 -0.7212 -1.2493 14 1 1.6226 -1.7258 -1.3163 15 6 3.5908 -0.7603 -1.2747 16 6 3.9096 -0.8549 -2.7817 17 7 2.7419 -0.3392 -3.5113 18 6 2.6194 -0.2737 -4.8518 19 8 1.6038 0.1741 -5.3485 20 6 3.7166 -0.7449 -5.7160 21 6 4.9307 -1.2715 -5.3481 22 8 5.5781 -1.5506 -6.4817 23 7 4.9477 -1.2665 -7.4704 24 6 3.7842 -0.7612 -7.1854 25 6 2.7292 -0.2926 -8.1542 26 6 2.3244 -1.4471 -9.0940 27 6 2.0944 -0.7586 -10.4631 28 6 3.2130 0.3122 -10.5003 29 6 3.2936 0.8257 -9.0479 30 6 1.7286 0.0959 -2.5281 31 1 -0.3634 -1.0234 -0.0942 32 1 -0.3634 0.4301 0.9333 33 1 -0.3634 0.5932 -0.8392 34 1 2.2490 -1.6319 1.1524 35 1 3.0617 -0.4627 5.4345 36 1 3.9631 -1.6379 -0.7460 37 1 4.0067 0.1528 -0.8491 38 1 4.7875 -0.2518 -3.0135 39 1 4.0902 -1.8937 -3.0580 40 1 5.2893 -1.4302 -4.3418 41 1 1.8569 0.0690 -7.6098 42 1 3.1281 -2.1800 -9.1660 43 1 1.4063 -1.9194 -8.7445 44 1 1.1106 -0.2908 -10.4990 45 1 2.2127 -1.4694 -11.2809 46 1 2.9428 1.1227 -11.1771 47 1 4.1611 -0.1341 -10.8002 48 1 2.6946 1.7297 -8.9377 49 1 4.3303 1.0301 -8.7803 50 1 0.7267 -0.1344 -2.8908 51 1 1.8231 1.1633 -2.3286 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271502013.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:30 Heat of formation + Delta-G solvation = 12.266805 kcal Electronic energy + Delta-G solvation = -30844.162780 eV Core-core repulsion = 26745.847929 eV Total energy + Delta-G solvation = -4098.314851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -46.01493 -41.18828 -39.40149 -38.93271 -36.94299 -34.85662 -34.31203 -33.26871 -31.97869 -31.14448 -29.79375 -29.70448 -28.98419 -26.69788 -25.51171 -23.91929 -23.54323 -22.74833 -21.61987 -21.33042 -21.08465 -20.57737 -19.56268 -18.75831 -18.52653 -17.92662 -17.44973 -16.80004 -16.73606 -16.58279 -16.01040 -15.80617 -15.25540 -15.00644 -14.90743 -14.65403 -14.50865 -14.35138 -14.16649 -13.93852 -13.84412 -13.51791 -13.46592 -12.96855 -12.92158 -12.83695 -12.72333 -12.34110 -12.21606 -12.08759 -12.03247 -12.00397 -11.89261 -11.74345 -11.70804 -11.65827 -11.55912 -11.39361 -11.15057 -10.93548 -10.92604 -10.79943 -9.77852 -9.26686 -7.95700 -5.28635 0.00566 0.68007 1.42243 1.46484 1.53724 1.59607 2.03908 2.19670 2.54414 2.87172 3.15726 3.30030 3.35919 3.56869 3.59903 3.64386 3.73766 3.82692 3.86128 3.92126 4.09359 4.23604 4.32884 4.38621 4.42594 4.44326 4.50318 4.51413 4.57470 4.60855 4.65968 4.71437 4.73838 4.82532 4.85532 4.91239 4.96440 4.98825 5.03019 5.11652 5.16723 5.17343 5.19408 5.30594 5.32593 5.38107 5.41026 5.59437 5.84595 6.27677 6.34077 6.93552 7.15167 7.16247 7.90754 8.10811 9.25981 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.022856 B = 0.002162 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.747900 B =12947.597058 C =13652.060581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.186 3.814 3 H 0.047 0.953 4 N -0.744 5.744 5 C -0.219 4.219 6 H 0.054 0.946 7 C -0.069 4.069 8 N -0.988 5.988 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.306 1.306 12 H -0.250 1.250 13 C -0.097 4.097 14 H 0.090 0.910 15 C -0.118 4.118 16 C 0.082 3.918 17 N -0.607 5.607 18 C 0.608 3.392 19 O -0.570 6.570 20 C -0.275 4.275 21 C 0.017 3.983 22 O 0.098 5.902 23 N -0.369 5.369 24 C 0.069 3.931 25 C -0.026 4.026 26 C -0.113 4.113 27 C -0.119 4.119 28 C -0.119 4.119 29 C -0.112 4.112 30 C 0.122 3.878 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.066 0.934 34 H 0.366 0.634 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.269 0.731 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.076 0.924 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -4.587 -29.321 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.078 3.922 3 H 0.065 0.935 4 N -0.388 5.388 5 C -0.351 4.351 6 H 0.072 0.928 7 C -0.260 4.260 8 N -0.639 5.639 9 Si 0.782 3.218 10 H -0.198 1.198 11 H -0.234 1.234 12 H -0.174 1.174 13 C -0.117 4.117 14 H 0.108 0.892 15 C -0.156 4.156 16 C -0.039 4.039 17 N -0.340 5.340 18 C 0.398 3.602 19 O -0.451 6.451 20 C -0.282 4.282 21 C -0.064 4.064 22 O 0.040 5.960 23 N -0.075 5.075 24 C -0.094 4.094 25 C -0.046 4.046 26 C -0.151 4.151 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.151 4.151 30 C -0.001 4.001 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.200 0.800 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.284 0.716 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.073 0.927 50 H 0.094 0.906 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.613 -4.448 -30.646 31.309 hybrid contribution -0.470 -0.444 1.723 1.841 sum 4.143 -4.893 -28.923 29.625 Atomic orbital electron populations 1.22364 0.97942 1.01372 1.00589 1.20254 0.92410 0.95097 0.84459 0.93459 1.42661 1.79958 1.09486 1.06667 1.18957 1.34461 0.94221 0.87425 0.92835 1.25500 1.02742 1.02546 0.95169 1.69892 1.54979 1.37775 1.01237 0.85419 0.78919 0.80722 0.76736 1.19790 1.23389 1.17442 1.22528 0.96831 0.99780 0.92573 0.89166 1.22593 0.94672 1.04282 0.94009 1.22690 0.88458 1.00879 0.91868 1.48382 1.19790 1.61876 1.03921 1.16595 0.85316 0.77962 0.80362 1.90754 1.31593 1.48572 1.74137 1.22179 0.98300 1.13888 0.93831 1.27672 0.90348 0.93833 0.94582 1.84588 1.39717 1.61285 1.10419 1.73620 1.07187 1.17918 1.08804 1.24965 0.94006 0.98262 0.92125 1.20502 0.93961 0.96734 0.93386 1.22434 1.01183 0.96308 0.95176 1.22505 0.99218 0.97868 0.96037 1.22347 0.99129 0.98927 0.95262 1.22179 1.00479 0.97227 0.95191 1.22253 0.92197 0.98859 0.86757 0.92906 0.94973 0.91491 0.80020 0.93626 0.88952 0.90701 0.88347 0.88147 0.71569 0.88677 0.91959 0.91219 0.90531 0.90065 0.90010 0.91690 0.90774 0.92727 0.90581 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 9.29 71.98 0.67 -4.42 16 2 C 0.19 6.03 2.42 44.99 0.11 6.14 16 3 H 0.05 1.65 7.99 -2.39 -0.02 1.63 16 4 N -0.74 -30.63 4.56 -322.95 -1.47 -32.10 16 5 C -0.22 -11.66 10.41 84.03 0.87 -10.78 16 6 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 7 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 8 N -0.99 -61.58 13.97 21.65 0.30 -61.28 16 9 Si 0.95 42.69 27.73 68.60 1.90 44.59 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.31 -14.40 7.11 99.48 0.71 -13.69 16 12 H -0.25 -9.90 6.52 99.48 0.65 -9.25 16 13 C -0.10 -2.31 2.62 -9.40 -0.02 -2.33 16 14 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 15 C -0.12 -2.34 6.07 31.78 0.19 -2.15 16 16 C 0.08 1.14 5.04 86.73 0.44 1.58 16 17 N -0.61 -12.60 3.34 -814.86 -2.72 -15.32 16 18 C 0.61 15.03 7.85 86.66 0.68 15.71 16 19 O -0.57 -18.06 15.55 -4.05 -0.06 -18.13 16 20 C -0.27 -5.65 6.41 -18.74 -0.12 -5.77 16 21 C 0.02 0.23 10.83 67.61 0.73 0.96 16 22 O 0.10 1.68 11.06 76.96 0.85 2.53 16 23 N -0.37 -7.87 11.84 -44.80 -0.53 -8.40 16 24 C 0.07 1.53 5.78 45.16 0.26 1.79 16 25 C -0.03 -0.55 3.36 -10.81 -0.04 -0.59 16 26 C -0.11 -1.99 6.36 31.70 0.20 -1.79 16 27 C -0.12 -1.60 6.91 31.91 0.22 -1.38 16 28 C -0.12 -1.66 6.83 31.67 0.22 -1.45 16 29 C -0.11 -2.01 6.45 31.32 0.20 -1.81 16 30 C 0.12 2.79 5.77 86.79 0.50 3.29 16 31 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.74 7.75 -2.38 -0.02 1.72 16 34 H 0.37 14.27 5.66 -92.71 -0.52 13.74 16 35 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 36 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 38 H 0.10 0.91 7.09 -2.39 -0.02 0.89 16 39 H 0.10 0.86 6.95 -2.39 -0.02 0.84 16 40 H 0.27 1.13 4.83 -2.91 -0.01 1.12 16 41 H 0.10 2.35 6.33 -2.39 -0.02 2.34 16 42 H 0.06 1.18 7.72 -2.38 -0.02 1.16 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.05 1.07 7.67 -2.38 -0.02 1.05 16 50 H 0.08 1.84 8.05 -2.38 -0.02 1.82 16 51 H 0.07 1.72 7.97 -2.39 -0.02 1.70 16 Total: -1.00 -72.61 400.52 4.21 -68.40 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.35 Total: 26.08 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 5.58 Total: -6.38 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -4.42 Total: -117.10 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.79 Total: -15.59 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.90 Total: 44.59 kcal Total: -72.61 4.21 -68.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271502013.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.663 kcal (2) G-P(sol) polarization free energy of solvation -72.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds