Wall clock time and date at job start Wed Apr 1 2020 04:41:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3
5 5 C 1.46895 * 111.00561 * 275.00137 * 4 2 1
6 6 C 1.50699 * 109.47505 * 180.02562 * 5 4 2
7 7 O 1.21295 * 119.99607 * 359.97438 * 6 5 4
8 8 N 1.34773 * 120.00043 * 180.02562 * 6 5 4
9 9 C 1.37101 * 119.99820 * 179.97438 * 8 6 5
10 10 H 1.07999 * 120.00168 * 359.97438 * 9 8 6
11 11 C 1.38955 * 119.99647 * 179.97438 * 9 8 6
12 12 N 1.31406 * 120.00321 * 359.97438 * 11 9 8
13 13 Si 1.86804 * 119.99765 * 179.97438 * 11 9 8
14 14 H 1.48507 * 109.46951 * 359.97438 * 13 11 9
15 15 H 1.48498 * 109.47110 * 119.99461 * 13 11 9
16 16 H 1.48498 * 109.46966 * 239.99913 * 13 11 9
17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3
18 18 H 1.09006 * 109.50311 * 185.06283 * 17 2 1
19 19 C 1.53040 * 109.49910 * 64.99971 * 17 2 1
20 20 C 1.53036 * 109.54409 * 178.68553 * 19 17 2
21 21 C 1.53194 * 109.31356 * 61.36343 * 20 19 17
22 22 N 1.46926 * 108.77300 * 305.36868 * 21 20 19
23 23 C 1.34775 * 120.62946 * 233.57962 * 22 21 20
24 24 O 1.21613 * 120.00228 * 179.97438 * 23 22 21
25 25 C 1.43197 * 120.00071 * 0.02562 * 23 22 21
26 26 C 7.18610 * 102.64569 * 223.84249 * 2 1 3
27 27 C 8.58447 * 103.22084 * 227.23129 * 2 1 3
28 28 C 1.52996 * 117.50401 * 39.94721 * 27 26 25
29 29 C 1.52997 * 117.50239 * 331.28125 * 27 26 25
30 30 C 1.46926 * 118.74060 * 53.61135 * 22 21 20
31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
34 34 H 1.00906 * 110.99706 * 38.96022 * 4 2 1
35 35 H 1.09004 * 109.46925 * 300.00216 * 5 4 2
36 36 H 1.09001 * 109.46797 * 59.99650 * 5 4 2
37 37 H 0.97001 * 120.00239 * 359.97438 * 8 6 5
38 38 H 0.96999 * 119.99987 * 180.02562 * 12 11 9
39 39 H 1.08998 * 109.46079 * 298.71021 * 19 17 2
40 40 H 1.09000 * 109.46042 * 58.66092 * 19 17 2
41 41 H 1.08995 * 109.50244 * 181.31965 * 20 19 17
42 42 H 1.09006 * 109.49532 * 301.38484 * 20 19 17
43 43 H 1.08999 * 109.58327 * 65.15148 * 21 20 19
44 44 H 1.08997 * 109.58811 * 185.43717 * 21 20 19
45 45 H 1.09007 * 115.54464 * 185.61624 * 27 26 25
46 46 H 1.09006 * 117.49305 * 359.97438 * 28 27 26
47 47 H 1.08997 * 117.50340 * 145.01543 * 28 27 26
48 48 H 1.08993 * 117.49942 * 214.97974 * 29 27 26
49 49 H 1.08996 * 117.49688 * 0.02562 * 29 27 26
50 50 H 1.08998 * 109.58962 * 186.60335 * 30 22 21
51 51 H 1.09001 * 109.59278 * 66.17488 * 30 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 2.0824 0.2226 2.3469
6 6 2.5885 -0.5214 3.5558
7 8 2.8688 -1.6984 3.4700
8 7 2.7286 0.1207 4.7324
9 6 3.1885 -0.5564 5.8323
10 1 3.4381 -1.6043 5.7560
11 6 3.3335 0.1058 7.0453
12 7 3.0303 1.3811 7.1381
13 14 3.9594 -0.8168 8.5441
14 1 4.2269 -2.2312 8.1786
15 1 5.2132 -0.1843 9.0268
16 1 2.9352 -0.7688 9.6183
17 6 2.0400 -0.7212 -1.2491
18 1 3.1263 -0.8007 -1.2054
19 6 1.6355 0.0686 -2.4960
20 6 2.1734 -0.6347 -3.7443
21 6 1.5613 -2.0358 -3.8398
22 7 1.8220 -2.7523 -2.5839
23 6 2.4124 -3.9639 -2.5944
24 8 2.6232 -4.5467 -1.5481
25 6 2.7923 -4.5645 -3.8376
26 6 3.1032 -5.0572 -4.8569
27 6 3.4933 -5.6747 -6.1348
28 6 2.3970 -5.8872 -7.1806
29 6 2.9768 -7.0854 -6.4247
30 6 1.4264 -2.1233 -1.3164
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 0.5139 0.8900
34 1 1.4495 -1.4979 1.4101
35 1 2.7588 1.0463 2.1182
36 1 1.0870 0.6164 2.5525
37 1 2.5041 1.0619 4.8011
38 1 3.1318 1.8434 7.9847
39 1 0.5486 0.1270 -2.5521
40 1 2.0505 1.0749 -2.4389
41 1 1.9050 -0.0592 -4.6302
42 1 3.2584 -0.7150 -3.6775
43 1 0.4859 -1.9546 -3.9978
44 1 2.0131 -2.5759 -4.6718
45 1 4.4900 -5.4197 -6.4952
46 1 1.3866 -5.5701 -6.9221
47 1 2.6723 -5.7725 -8.2290
48 1 3.6334 -7.7583 -6.9760
49 1 2.3477 -7.5561 -5.6692
50 1 1.7910 -2.7221 -0.4819
51 1 0.3400 -2.0494 -1.2686
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001271636293.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:53
Heat of formation + Delta-G solvation = 4.708694 kcal
Electronic energy + Delta-G solvation = -29731.975821 eV
Core-core repulsion = 25633.333226 eV
Total energy + Delta-G solvation = -4098.642596 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-40.51047 -38.65471 -38.06476 -37.86262 -36.08140 -33.92098 -33.37799 -32.65358
-31.64576 -31.09865 -28.86795 -26.57003 -26.41385 -24.73368 -24.21073 -23.63005
-22.96693 -22.02168 -21.17285 -19.39906 -19.07817 -18.25521 -17.82379 -17.09120
-16.52780 -16.04034 -15.63130 -15.34970 -15.30368 -14.88934 -14.70114 -14.54508
-14.50012 -14.03687 -13.79776 -13.38499 -13.37093 -13.24624 -13.07139 -12.91827
-12.54325 -12.31284 -12.15966 -12.12227 -12.08258 -11.67201 -11.54549 -11.46914
-11.43242 -11.11326 -11.02908 -10.82831 -10.77898 -10.53534 -10.50858 -10.44174
-10.29850 -10.17043 -9.98286 -9.46759 -8.82593 -8.39248 -7.98000 -7.89888
-6.37010 -3.77318 1.33378 1.83170 2.67277 3.20289 3.29650 3.30495
3.38652 3.42376 3.64959 3.97070 4.09273 4.24428 4.29636 4.39934
4.43610 4.50410 4.60494 4.72879 4.75546 4.96742 5.01133 5.06836
5.13452 5.16379 5.21792 5.25842 5.28952 5.31200 5.32784 5.37690
5.47704 5.52957 5.54874 5.62555 5.70224 5.73449 5.80205 5.88824
5.89723 6.02768 6.06667 6.11176 6.32325 6.33275 6.36625 6.91670
7.11591 7.29559 7.60524 7.72300 7.92266 8.12317 8.67095 9.23609
9.60092 10.12134 10.80933
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015849 B = 0.001864 C = 0.001703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1766.225163 B =15020.491885 C =16441.375793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.091 3.909
3 H 0.081 0.919
4 N -0.664 5.664
5 C 0.051 3.949
6 C 0.441 3.559
7 O -0.580 6.580
8 N -0.566 5.566
9 C -0.297 4.297
10 H 0.103 0.897
11 C 0.021 3.979
12 N -0.903 5.903
13 Si 0.929 3.071
14 H -0.268 1.268
15 H -0.282 1.282
16 H -0.282 1.282
17 C -0.088 4.088
18 H 0.085 0.915
19 C -0.117 4.117
20 C -0.134 4.134
21 C 0.107 3.893
22 N -0.600 5.600
23 C 0.628 3.372
24 O -0.511 6.511
25 C -0.204 4.204
26 C -0.064 4.064
27 C -0.063 4.063
28 C -0.160 4.160
29 C -0.161 4.161
30 C 0.114 3.886
31 H 0.061 0.939
32 H 0.062 0.938
33 H 0.057 0.943
34 H 0.350 0.650
35 H 0.085 0.915
36 H 0.043 0.957
37 H 0.392 0.608
38 H 0.270 0.730
39 H 0.067 0.933
40 H 0.068 0.932
41 H 0.076 0.924
42 H 0.069 0.931
43 H 0.071 0.929
44 H 0.082 0.918
45 H 0.136 0.864
46 H 0.100 0.900
47 H 0.108 0.892
48 H 0.108 0.892
49 H 0.101 0.899
50 H 0.106 0.894
51 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.818 -3.629 -31.383 32.123
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.250 4.250
2 C -0.020 4.020
3 H 0.100 0.900
4 N -0.296 5.296
5 C -0.081 4.081
6 C 0.226 3.774
7 O -0.463 6.463
8 N -0.203 5.203
9 C -0.427 4.427
10 H 0.121 0.879
11 C -0.180 4.180
12 N -0.545 5.545
13 Si 0.756 3.244
14 H -0.192 1.192
15 H -0.208 1.208
16 H -0.208 1.208
17 C -0.108 4.108
18 H 0.104 0.896
19 C -0.155 4.155
20 C -0.172 4.172
21 C -0.016 4.016
22 N -0.332 5.332
23 C 0.416 3.584
24 O -0.388 6.388
25 C -0.207 4.207
26 C -0.067 4.067
27 C -0.081 4.081
28 C -0.197 4.197
29 C -0.198 4.198
30 C -0.008 4.008
31 H 0.080 0.920
32 H 0.081 0.919
33 H 0.076 0.924
34 H 0.170 0.830
35 H 0.103 0.897
36 H 0.061 0.939
37 H 0.225 0.775
38 H 0.080 0.920
39 H 0.085 0.915
40 H 0.087 0.913
41 H 0.094 0.906
42 H 0.087 0.913
43 H 0.089 0.911
44 H 0.101 0.899
45 H 0.154 0.846
46 H 0.118 0.882
47 H 0.126 0.874
48 H 0.127 0.873
49 H 0.120 0.880
50 H 0.124 0.876
51 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -4.849 -4.540 -30.823 31.531
hybrid contribution -0.719 0.503 1.057 1.373
sum -5.568 -4.038 -29.766 30.551
Atomic orbital electron populations
1.22681 0.97637 1.02365 1.02272 1.21528 0.92306 0.97917 0.90248
0.90045 1.60176 1.57733 1.09091 1.02574 1.21692 0.99804 0.95695
0.90923 1.19856 0.85066 0.88280 0.84198 1.90549 1.54982 1.16237
1.84562 1.41867 1.58020 1.12440 1.07954 1.19769 1.39673 0.96477
0.86749 0.87873 1.25248 0.97763 0.95778 0.99221 1.69619 1.49006
1.08847 1.27014 0.85809 0.78203 0.79693 0.80706 1.19206 1.20781
1.20821 1.21496 1.01912 0.93827 0.93556 0.89614 1.21645 1.01126
0.99098 0.93644 1.21908 1.01336 0.95174 0.98770 1.21755 1.00737
0.93150 0.85916 1.47920 1.59592 1.17311 1.08413 1.14773 0.77842
0.80900 0.84897 1.90926 1.53794 1.62179 1.31861 1.20647 1.03824
1.01960 0.94259 1.21303 0.95038 0.96889 0.93452 1.18891 1.00023
0.99828 0.89356 1.23119 0.97863 1.01799 0.96953 1.23132 1.03468
0.90094 1.03113 1.21921 0.99145 0.93971 0.85714 0.92044 0.91930
0.92401 0.82965 0.89694 0.93888 0.77524 0.92013 0.91451 0.91291
0.90578 0.91259 0.91104 0.89947 0.84610 0.88157 0.87362 0.87339
0.88040 0.87589 0.91027
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.90 8.43 37.16 0.31 -1.58 16
2 C 0.09 1.07 2.37 -67.72 -0.16 0.91 16
3 H 0.08 0.92 7.80 -51.93 -0.40 0.52 16
4 N -0.66 -10.84 5.57 -108.00 -0.60 -11.44 16
5 C 0.05 0.92 5.96 -4.98 -0.03 0.89 16
6 C 0.44 10.71 7.82 -10.99 -0.09 10.62 16
7 O -0.58 -16.38 15.78 5.54 0.09 -16.29 16
8 N -0.57 -14.69 5.29 -10.96 -0.06 -14.75 16
9 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16
10 H 0.10 3.12 7.16 -52.49 -0.38 2.75 16
11 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16
12 N -0.90 -24.99 13.05 55.50 0.72 -24.27 16
13 Si 0.93 21.60 29.55 -169.99 -5.02 16.57 16
14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16
15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
17 C -0.09 -0.96 2.32 -90.50 -0.21 -1.17 16
18 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16
19 C -0.12 -0.91 4.89 -26.69 -0.13 -1.04 16
20 C -0.13 -0.94 6.08 -26.61 -0.16 -1.10 16
21 C 0.11 0.84 6.32 -3.71 -0.02 0.82 16
22 N -0.60 -6.94 2.97 -175.64 -0.52 -7.47 16
23 C 0.63 9.12 7.55 -14.34 -0.11 9.01 16
24 O -0.51 -9.70 16.50 5.27 0.09 -9.61 16
25 C -0.20 -2.50 11.58 -38.84 -0.45 -2.95 16
26 C -0.06 -0.64 13.41 -37.13 -0.50 -1.13 16
27 C -0.06 -0.39 6.21 -93.41 -0.58 -0.97 16
28 C -0.16 -0.68 10.21 -26.69 -0.27 -0.96 16
29 C -0.16 -0.80 10.21 -26.69 -0.27 -1.07 16
30 C 0.11 1.37 5.09 -3.71 -0.02 1.35 16
31 H 0.06 0.61 6.22 -51.93 -0.32 0.29 16
32 H 0.06 0.50 6.60 -51.93 -0.34 0.16 16
33 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16
34 H 0.35 6.06 7.66 -39.29 -0.30 5.76 16
35 H 0.08 1.40 8.06 -51.93 -0.42 0.99 16
36 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16
37 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16
38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16
39 H 0.07 0.47 6.63 -51.93 -0.34 0.12 16
40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16
41 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
44 H 0.08 0.60 6.33 -51.93 -0.33 0.28 16
45 H 0.14 0.61 8.14 -51.93 -0.42 0.18 16
46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16
47 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16
48 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16
49 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16
50 H 0.11 1.65 6.49 -51.93 -0.34 1.31 16
51 H 0.07 0.75 6.06 -51.93 -0.31 0.43 16
LS Contribution 415.20 15.07 6.26 6.26
Total: -1.00 -35.28 415.20 -9.93 -45.20
By element:
Atomic # 1 Polarization: 20.30 SS G_CDS: -7.95 Total: 12.35 kcal
Atomic # 6 Polarization: 6.38 SS G_CDS: -2.93 Total: 3.45 kcal
Atomic # 7 Polarization: -57.47 SS G_CDS: -0.46 Total: -57.92 kcal
Atomic # 8 Polarization: -26.08 SS G_CDS: 0.17 Total: -25.91 kcal
Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal
Total LS contribution 6.26 Total: 6.26 kcal
Total: -35.28 -9.93 -45.20 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271636293.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.913 kcal
(2) G-P(sol) polarization free energy of solvation -35.277 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.204 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.709 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds