Wall clock time and date at job start Wed Apr 1 2020 04:41:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 N 1.46902 * 109.47094 * 119.99508 * 2 1 3
5 5 C 1.46895 * 111.00561 * 275.00137 * 4 2 1
6 6 C 1.50699 * 109.47505 * 180.02562 * 5 4 2
7 7 O 1.21295 * 119.99607 * 359.97438 * 6 5 4
8 8 N 1.34773 * 120.00043 * 180.02562 * 6 5 4
9 9 C 1.37101 * 119.99820 * 179.97438 * 8 6 5
10 10 H 1.07999 * 120.00168 * 359.97438 * 9 8 6
11 11 C 1.38955 * 119.99647 * 179.97438 * 9 8 6
12 12 N 1.31406 * 120.00321 * 359.97438 * 11 9 8
13 13 Si 1.86804 * 119.99765 * 179.97438 * 11 9 8
14 14 H 1.48507 * 109.46951 * 359.97438 * 13 11 9
15 15 H 1.48498 * 109.47110 * 119.99461 * 13 11 9
16 16 H 1.48498 * 109.46966 * 239.99913 * 13 11 9
17 17 C 1.52992 * 109.47482 * 239.99783 * 2 1 3
18 18 H 1.09006 * 109.50311 * 185.06283 * 17 2 1
19 19 C 1.53040 * 109.49910 * 64.99971 * 17 2 1
20 20 C 1.53036 * 109.54409 * 178.68553 * 19 17 2
21 21 C 1.53194 * 109.31356 * 61.36343 * 20 19 17
22 22 N 1.46926 * 108.77300 * 305.36868 * 21 20 19
23 23 C 1.34775 * 120.62946 * 233.57962 * 22 21 20
24 24 O 1.21613 * 120.00228 * 179.97438 * 23 22 21
25 25 C 1.43197 * 120.00071 * 0.02562 * 23 22 21
26 26 C 7.18610 * 102.64569 * 223.84249 * 2 1 3
27 27 C 8.58447 * 103.22084 * 227.23129 * 2 1 3
28 28 C 1.52996 * 117.50401 * 39.94721 * 27 26 25
29 29 C 1.52997 * 117.50239 * 331.28125 * 27 26 25
30 30 C 1.46926 * 118.74060 * 53.61135 * 22 21 20
31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
32 32 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
33 33 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
34 34 H 1.00906 * 110.99706 * 38.96022 * 4 2 1
35 35 H 1.09004 * 109.46925 * 300.00216 * 5 4 2
36 36 H 1.09001 * 109.46797 * 59.99650 * 5 4 2
37 37 H 0.97001 * 120.00239 * 359.97438 * 8 6 5
38 38 H 0.96999 * 119.99987 * 180.02562 * 12 11 9
39 39 H 1.08998 * 109.46079 * 298.71021 * 19 17 2
40 40 H 1.09000 * 109.46042 * 58.66092 * 19 17 2
41 41 H 1.08995 * 109.50244 * 181.31965 * 20 19 17
42 42 H 1.09006 * 109.49532 * 301.38484 * 20 19 17
43 43 H 1.08999 * 109.58327 * 65.15148 * 21 20 19
44 44 H 1.08997 * 109.58811 * 185.43717 * 21 20 19
45 45 H 1.09007 * 115.54464 * 185.61624 * 27 26 25
46 46 H 1.09006 * 117.49305 * 359.97438 * 28 27 26
47 47 H 1.08997 * 117.50340 * 145.01543 * 28 27 26
48 48 H 1.08993 * 117.49942 * 214.97974 * 29 27 26
49 49 H 1.08996 * 117.49688 * 0.02562 * 29 27 26
50 50 H 1.08998 * 109.58962 * 186.60335 * 30 22 21
51 51 H 1.09001 * 109.59278 * 66.17488 * 30 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 7 2.0196 -0.6924 1.1995
5 6 2.0824 0.2226 2.3469
6 6 2.5885 -0.5214 3.5558
7 8 2.8688 -1.6984 3.4700
8 7 2.7286 0.1207 4.7324
9 6 3.1885 -0.5564 5.8323
10 1 3.4381 -1.6043 5.7560
11 6 3.3335 0.1058 7.0453
12 7 3.0303 1.3811 7.1381
13 14 3.9594 -0.8168 8.5441
14 1 4.2269 -2.2312 8.1786
15 1 5.2132 -0.1843 9.0268
16 1 2.9352 -0.7688 9.6183
17 6 2.0400 -0.7212 -1.2491
18 1 3.1263 -0.8007 -1.2054
19 6 1.6355 0.0686 -2.4960
20 6 2.1734 -0.6347 -3.7443
21 6 1.5613 -2.0358 -3.8398
22 7 1.8220 -2.7523 -2.5839
23 6 2.4124 -3.9639 -2.5944
24 8 2.6232 -4.5467 -1.5481
25 6 2.7923 -4.5645 -3.8376
26 6 3.1032 -5.0572 -4.8569
27 6 3.4933 -5.6747 -6.1348
28 6 2.3970 -5.8872 -7.1806
29 6 2.9768 -7.0854 -6.4247
30 6 1.4264 -2.1233 -1.3164
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3634 0.5139 0.8900
34 1 1.4495 -1.4979 1.4101
35 1 2.7588 1.0463 2.1182
36 1 1.0870 0.6164 2.5525
37 1 2.5041 1.0619 4.8011
38 1 3.1318 1.8434 7.9847
39 1 0.5486 0.1270 -2.5521
40 1 2.0505 1.0749 -2.4389
41 1 1.9050 -0.0592 -4.6302
42 1 3.2584 -0.7150 -3.6775
43 1 0.4859 -1.9546 -3.9978
44 1 2.0131 -2.5759 -4.6718
45 1 4.4900 -5.4197 -6.4952
46 1 1.3866 -5.5701 -6.9221
47 1 2.6723 -5.7725 -8.2290
48 1 3.6334 -7.7583 -6.9760
49 1 2.3477 -7.5561 -5.6692
50 1 1.7910 -2.7221 -0.4819
51 1 0.3400 -2.0494 -1.2686
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001271636293.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:41:52
Heat of formation + Delta-G solvation = -19.771492 kcal
Electronic energy + Delta-G solvation = -29733.037362 eV
Core-core repulsion = 25633.333226 eV
Total energy + Delta-G solvation = -4099.704136 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-41.48587 -40.24637 -39.27263 -38.50373 -37.22152 -35.95999 -34.41290 -33.51603
-33.28318 -32.53616 -29.85096 -28.02878 -27.40662 -26.11678 -25.05831 -24.78140
-23.30169 -22.82824 -22.00947 -21.14471 -20.14939 -19.91068 -19.11524 -17.89837
-17.72715 -17.37915 -16.84629 -16.49614 -16.36386 -16.10052 -15.94490 -15.79493
-15.51366 -15.32995 -15.16151 -14.82897 -14.31184 -14.20166 -14.05924 -13.70641
-13.55619 -13.51653 -13.28430 -13.22404 -13.07252 -12.91401 -12.70916 -12.43128
-12.42897 -12.31901 -12.21049 -12.14088 -11.86674 -11.76804 -11.67702 -11.53414
-11.42959 -11.35410 -11.13050 -10.66886 -10.35858 -10.02913 -9.75905 -9.26045
-8.48652 -5.97259 0.38492 1.04077 1.34506 1.39476 1.54087 1.78750
2.03933 2.27880 2.34378 2.84543 2.91355 3.03600 3.18340 3.49168
3.71067 3.78324 3.82541 3.86771 4.01267 4.02724 4.06364 4.15682
4.25689 4.32303 4.37430 4.42199 4.46975 4.48480 4.57463 4.60165
4.65651 4.76506 4.82610 4.86149 4.94874 4.97508 4.98788 5.07478
5.08987 5.14424 5.21278 5.26934 5.30738 5.39358 5.44735 5.52514
5.91134 6.08338 6.15076 6.16640 6.40921 6.59179 6.88034 7.11443
7.54684 8.11381 8.68949
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.015849 B = 0.001864 C = 0.001703
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1766.225163 B =15020.491885 C =16441.375793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.092 3.908
3 H 0.095 0.905
4 N -0.685 5.685
5 C 0.069 3.931
6 C 0.434 3.566
7 O -0.627 6.627
8 N -0.572 5.572
9 C -0.336 4.336
10 H 0.075 0.925
11 C -0.011 4.011
12 N -0.918 5.918
13 Si 0.992 3.008
14 H -0.277 1.277
15 H -0.269 1.269
16 H -0.268 1.268
17 C -0.080 4.080
18 H 0.053 0.947
19 C -0.110 4.110
20 C -0.129 4.129
21 C 0.102 3.898
22 N -0.593 5.593
23 C 0.620 3.380
24 O -0.578 6.578
25 C -0.260 4.260
26 C -0.025 4.025
27 C -0.087 4.087
28 C -0.141 4.141
29 C -0.162 4.162
30 C 0.114 3.886
31 H 0.056 0.944
32 H 0.092 0.908
33 H 0.053 0.947
34 H 0.340 0.660
35 H 0.104 0.896
36 H 0.070 0.930
37 H 0.397 0.603
38 H 0.278 0.722
39 H 0.088 0.912
40 H 0.082 0.918
41 H 0.110 0.890
42 H 0.052 0.948
43 H 0.095 0.905
44 H 0.088 0.912
45 H 0.159 0.841
46 H 0.097 0.903
47 H 0.136 0.864
48 H 0.130 0.870
49 H 0.087 0.913
50 H 0.060 0.940
51 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.844 -1.950 -34.475 35.202
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C -0.018 4.018
3 H 0.113 0.887
4 N -0.317 5.317
5 C -0.064 4.064
6 C 0.222 3.778
7 O -0.513 6.513
8 N -0.210 5.210
9 C -0.465 4.465
10 H 0.093 0.907
11 C -0.211 4.211
12 N -0.559 5.559
13 Si 0.816 3.184
14 H -0.202 1.202
15 H -0.194 1.194
16 H -0.193 1.193
17 C -0.100 4.100
18 H 0.072 0.928
19 C -0.148 4.148
20 C -0.166 4.166
21 C -0.020 4.020
22 N -0.323 5.323
23 C 0.410 3.590
24 O -0.460 6.460
25 C -0.263 4.263
26 C -0.027 4.027
27 C -0.104 4.104
28 C -0.177 4.177
29 C -0.199 4.199
30 C -0.007 4.007
31 H 0.075 0.925
32 H 0.111 0.889
33 H 0.072 0.928
34 H 0.159 0.841
35 H 0.122 0.878
36 H 0.087 0.913
37 H 0.231 0.769
38 H 0.088 0.912
39 H 0.107 0.893
40 H 0.100 0.900
41 H 0.128 0.872
42 H 0.071 0.929
43 H 0.114 0.886
44 H 0.107 0.893
45 H 0.176 0.824
46 H 0.115 0.885
47 H 0.154 0.846
48 H 0.149 0.851
49 H 0.105 0.895
50 H 0.078 0.922
51 H 0.110 0.890
Dipole moment (debyes) X Y Z Total
from point charges -5.906 -2.775 -33.967 34.588
hybrid contribution -0.395 -0.048 1.895 1.936
sum -6.300 -2.823 -32.072 32.807
Atomic orbital electron populations
1.22604 0.95607 1.02476 1.03538 1.21657 0.93907 0.97947 0.88255
0.88740 1.60177 1.58904 1.09187 1.03423 1.21539 1.01115 0.95213
0.88497 1.21027 0.83409 0.88020 0.85346 1.90518 1.56650 1.18643
1.85503 1.41918 1.58353 1.12598 1.08113 1.19687 1.42281 0.95877
0.88690 0.90739 1.26014 0.97177 0.96652 1.01260 1.69667 1.48576
1.09557 1.28114 0.84887 0.78312 0.77889 0.77314 1.20211 1.19414
1.19306 1.21411 0.99802 0.93526 0.95250 0.92813 1.21642 1.02483
0.98969 0.91729 1.21912 1.00261 0.94673 0.99803 1.22087 1.02431
0.93311 0.84125 1.48073 1.57980 1.16534 1.09719 1.15171 0.77415
0.81464 0.84979 1.90872 1.56880 1.64079 1.34172 1.20392 1.06560
1.04505 0.94877 1.22122 0.92360 0.94688 0.93559 1.19308 1.01931
1.00892 0.88296 1.23258 0.96870 0.99983 0.97633 1.23251 1.03583
0.89960 1.03075 1.21855 1.00133 0.93967 0.84769 0.92530 0.88895
0.92816 0.84096 0.87770 0.91265 0.76874 0.91236 0.89339 0.89972
0.87186 0.92865 0.88650 0.89343 0.82380 0.88470 0.84643 0.85143
0.89476 0.92160 0.88985
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.25 8.43 71.98 0.61 -2.64 16
2 C 0.09 2.08 2.37 44.91 0.11 2.18 16
3 H 0.09 1.91 7.80 -2.39 -0.02 1.89 16
4 N -0.69 -23.04 5.57 -495.60 -2.76 -25.80 16
5 C 0.07 2.45 5.96 85.56 0.51 2.96 16
6 C 0.43 21.91 7.82 87.66 0.69 22.60 16
7 O -0.63 -37.52 15.78 -3.08 -0.05 -37.57 16
8 N -0.57 -30.64 5.29 -306.98 -1.62 -32.27 16
9 C -0.34 -19.94 9.68 84.04 0.81 -19.13 16
10 H 0.07 4.78 7.16 -2.91 -0.02 4.76 16
11 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16
12 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16
13 Si 0.99 44.58 29.55 68.60 2.03 46.60 16
14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16
16 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16
17 C -0.08 -1.73 2.32 -10.72 -0.02 -1.76 16
18 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16
19 C -0.11 -1.40 4.89 30.62 0.15 -1.25 16
20 C -0.13 -1.47 6.08 30.67 0.19 -1.29 16
21 C 0.10 1.44 6.32 86.36 0.55 1.98 16
22 N -0.59 -14.34 2.97 -827.86 -2.46 -16.80 16
23 C 0.62 19.74 7.55 85.49 0.65 20.39 16
24 O -0.58 -24.65 16.50 -4.07 -0.07 -24.72 16
25 C -0.26 -6.77 11.58 30.01 0.35 -6.42 16
26 C -0.02 -0.48 13.41 31.12 0.42 -0.07 16
27 C -0.09 -0.89 6.21 -12.60 -0.08 -0.97 16
28 C -0.14 -0.77 10.21 30.62 0.31 -0.46 16
29 C -0.16 -1.27 10.21 30.62 0.31 -0.96 16
30 C 0.11 2.90 5.09 86.36 0.44 3.34 16
31 H 0.06 1.06 6.22 -2.39 -0.01 1.05 16
32 H 0.09 1.10 6.60 -2.39 -0.02 1.08 16
33 H 0.05 1.02 7.45 -2.38 -0.02 1.00 16
34 H 0.34 12.54 7.66 -89.69 -0.69 11.85 16
35 H 0.10 3.34 8.06 -2.39 -0.02 3.32 16
36 H 0.07 2.13 7.44 -2.39 -0.02 2.11 16
37 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16
38 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16
39 H 0.09 0.81 6.63 -2.39 -0.02 0.79 16
40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16
41 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16
42 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16
43 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16
44 H 0.09 1.17 6.33 -2.39 -0.02 1.16 16
45 H 0.16 0.97 8.14 -2.38 -0.02 0.95 16
46 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16
47 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16
48 H 0.13 0.46 8.14 -2.39 -0.02 0.45 16
49 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
50 H 0.06 2.11 6.49 -2.39 -0.02 2.10 16
51 H 0.09 1.92 6.06 -2.39 -0.01 1.90 16
Total: -1.00 -84.04 415.20 1.35 -82.70
By element:
Atomic # 1 Polarization: 40.21 SS G_CDS: -0.45 Total: 39.77 kcal
Atomic # 6 Polarization: 11.92 SS G_CDS: 6.44 Total: 18.36 kcal
Atomic # 7 Polarization: -118.58 SS G_CDS: -6.56 Total: -125.14 kcal
Atomic # 8 Polarization: -62.17 SS G_CDS: -0.12 Total: -62.29 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal
Total: -84.04 1.35 -82.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271636293.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 62.925 kcal
(2) G-P(sol) polarization free energy of solvation -84.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.119 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.697 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.771 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds