Wall clock time and date at job start Wed Apr 1 2020 04:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47120 * 2 1 4 4 N 1.46505 * 109.46882 * 120.00126 * 2 1 3 5 5 C 1.36935 * 119.99728 * 275.00185 * 4 2 1 6 6 H 1.07999 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99634 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99805 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47080 * 90.00176 * 9 7 5 11 11 H 1.48497 * 109.47079 * 209.99843 * 9 7 5 12 12 H 1.48496 * 109.47217 * 330.00148 * 9 7 5 13 13 C 1.53004 * 109.47253 * 239.99834 * 2 1 3 14 14 H 1.09002 * 109.52323 * 184.92498 * 13 2 1 15 15 C 1.53041 * 109.49660 * 64.84132 * 13 2 1 16 16 C 1.53033 * 109.53898 * 178.68381 * 15 13 2 17 17 C 1.53192 * 109.31270 * 61.36218 * 16 15 13 18 18 N 1.46926 * 108.77820 * 305.36633 * 17 16 15 19 19 C 1.34773 * 120.62904 * 233.58715 * 18 17 16 20 20 O 1.21285 * 119.99916 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00401 * 359.97438 * 19 18 17 22 22 O 1.42900 * 109.47487 * 180.02562 * 21 19 18 23 23 C 1.42906 * 114.00257 * 180.02562 * 22 21 19 24 24 C 1.50699 * 109.46971 * 180.02562 * 23 22 21 25 25 C 1.38657 * 120.78902 * 269.71751 * 24 23 22 26 26 C 1.38201 * 119.16036 * 179.75605 * 25 24 23 27 27 N 1.31866 * 120.76518 * 0.53519 * 26 25 24 28 28 C 1.31863 * 121.72703 * 359.73405 * 27 26 25 29 29 C 1.38208 * 120.76614 * 359.97438 * 28 27 26 30 30 C 1.46927 * 118.73580 * 53.60911 * 18 17 16 31 31 H 1.08994 * 109.47213 * 300.00481 * 1 2 3 32 32 H 1.09001 * 109.47062 * 60.00025 * 1 2 3 33 33 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99804 * 94.99977 * 4 2 1 35 35 H 0.96996 * 119.99770 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46121 * 298.70159 * 15 13 2 37 37 H 1.09004 * 109.46035 * 58.67146 * 15 13 2 38 38 H 1.09000 * 109.49457 * 301.41562 * 16 15 13 39 39 H 1.08995 * 109.50116 * 181.31732 * 16 15 13 40 40 H 1.09006 * 109.58809 * 185.57967 * 17 16 15 41 41 H 1.09002 * 109.58657 * 65.15954 * 17 16 15 42 42 H 1.09004 * 109.47604 * 300.00071 * 21 19 18 43 43 H 1.09003 * 109.47185 * 60.00195 * 21 19 18 44 44 H 1.08997 * 109.46815 * 299.99764 * 23 22 21 45 45 H 1.08996 * 109.47185 * 59.99824 * 23 22 21 46 46 H 1.08003 * 120.41372 * 0.02562 * 25 24 23 47 47 H 1.08006 * 119.61284 * 180.29068 * 26 25 24 48 48 H 1.08001 * 119.61951 * 180.02562 * 28 27 26 49 49 H 1.07996 * 120.41961 * 180.02562 * 29 28 27 50 50 H 1.08997 * 109.58859 * 66.17990 * 30 18 17 51 51 H 1.09001 * 109.58530 * 186.46228 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0404 2.4242 7 6 2.6121 -0.6618 3.5090 8 7 2.7382 -0.0051 4.6427 9 14 3.0564 -2.4742 3.4251 10 1 4.4890 -2.6164 3.0608 11 1 2.8174 -3.1042 4.7484 12 1 2.2161 -3.1429 2.3995 13 6 2.0400 -0.7213 -1.2492 14 1 3.1265 -0.7988 -1.2071 15 6 1.6321 0.0665 -2.4963 16 6 2.1699 -0.6367 -3.7446 17 6 1.5608 -2.0392 -3.8380 18 7 1.8248 -2.7541 -2.5818 19 6 2.4180 -3.9642 -2.5920 20 8 2.6301 -4.5445 -1.5483 21 6 2.8166 -4.5970 -3.9002 22 8 3.4210 -5.8676 -3.6503 23 6 3.8385 -6.5552 -4.8315 24 6 4.4576 -7.8756 -4.4517 25 6 5.8183 -7.9766 -4.2049 26 6 6.3497 -9.2032 -3.8541 27 7 5.5807 -10.2705 -3.7635 28 6 4.2841 -10.2127 -3.9964 29 6 3.6811 -9.0194 -4.3462 30 6 1.4295 -2.1248 -1.3144 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6319 1.1526 35 1 3.0615 -0.4624 5.4347 36 1 0.5449 0.1224 -2.5510 37 1 2.0450 1.0738 -2.4407 38 1 3.2551 -0.7149 -3.6789 39 1 1.8990 -0.0627 -4.6307 40 1 2.0146 -2.5801 -4.6685 41 1 0.4850 -1.9608 -3.9947 42 1 1.9323 -4.7320 -4.5231 43 1 3.5280 -3.9508 -4.4146 44 1 2.9756 -6.7303 -5.4740 45 1 4.5714 -5.9496 -5.3645 46 1 6.4539 -7.1069 -4.2816 47 1 7.4079 -9.2892 -3.6556 48 1 3.6862 -11.1082 -3.9119 49 1 2.6186 -8.9784 -4.5353 50 1 0.3430 -2.0533 -1.2652 51 1 1.7944 -2.7234 -0.4797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271666824.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:38 Heat of formation + Delta-G solvation = -26.571174 kcal Electronic energy + Delta-G solvation = -30473.039043 eV Core-core repulsion = 26373.040051 eV Total energy + Delta-G solvation = -4099.998993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.59830 -40.34600 -38.52993 -37.47602 -35.64767 -33.61092 -33.05554 -31.98729 -31.56545 -30.45432 -29.15469 -27.98192 -26.74554 -25.14572 -24.31715 -23.83259 -23.01836 -22.41040 -21.18923 -19.75210 -18.80195 -17.95368 -17.49034 -17.10071 -17.06532 -16.61159 -16.17630 -15.95752 -15.74685 -14.91985 -14.79763 -14.75737 -14.42679 -14.13549 -14.06957 -14.01033 -13.75690 -13.34937 -13.15647 -13.10070 -12.71936 -12.58087 -12.53316 -12.18713 -12.13592 -11.91273 -11.67939 -11.37813 -11.19107 -10.89625 -10.73208 -10.53959 -10.39421 -10.19594 -10.18603 -10.11537 -9.95269 -9.84260 -9.68614 -9.50655 -9.49514 -8.89226 -8.61473 -7.22946 -5.72401 -3.07779 0.75029 0.79203 2.50835 2.56346 3.32895 3.47296 3.53144 3.56882 3.69331 4.11859 4.18031 4.27582 4.43847 4.50809 4.63297 4.66335 4.69786 4.71046 4.74809 4.81903 4.82328 4.88340 4.93852 5.07185 5.17190 5.24727 5.25039 5.41974 5.44482 5.52651 5.57246 5.58551 5.69313 5.72603 5.77908 5.90902 5.95538 5.96337 6.13887 6.21959 6.24167 6.32174 6.36533 6.46572 6.56316 6.63895 6.78583 7.03820 7.30209 7.61570 8.03400 8.11928 8.46761 9.25477 9.98725 10.17687 11.45772 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.002572 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.907149 B =10883.328828 C =13030.770407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.750 5.750 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.006 3.994 8 N -0.935 5.935 9 Si 0.879 3.121 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.274 1.274 13 C -0.108 4.108 14 H 0.075 0.925 15 C -0.114 4.114 16 C -0.135 4.135 17 C 0.106 3.894 18 N -0.610 5.610 19 C 0.510 3.490 20 O -0.513 6.513 21 C 0.047 3.953 22 O -0.354 6.354 23 C 0.100 3.900 24 C -0.046 4.046 25 C -0.150 4.150 26 C 0.097 3.903 27 N -0.482 5.482 28 C 0.096 3.904 29 C -0.151 4.151 30 C 0.115 3.885 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.047 0.953 34 H 0.361 0.639 35 H 0.259 0.741 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.137 0.863 47 H 0.158 0.842 48 H 0.158 0.842 49 H 0.136 0.864 50 H 0.075 0.925 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 -10.846 -29.469 31.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.075 3.925 3 H 0.077 0.923 4 N -0.393 5.393 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.190 4.190 8 N -0.583 5.583 9 Si 0.709 3.291 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.200 1.200 13 C -0.128 4.128 14 H 0.094 0.906 15 C -0.152 4.152 16 C -0.173 4.173 17 C -0.017 4.017 18 N -0.346 5.346 19 C 0.296 3.704 20 O -0.387 6.387 21 C -0.033 4.033 22 O -0.272 6.272 23 C 0.023 3.977 24 C -0.054 4.054 25 C -0.170 4.170 26 C -0.060 4.060 27 N -0.191 5.191 28 C -0.061 4.061 29 C -0.170 4.170 30 C -0.006 4.006 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.195 0.805 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.155 0.845 47 H 0.176 0.824 48 H 0.175 0.825 49 H 0.154 0.846 50 H 0.094 0.906 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.108 -11.879 -28.284 30.677 hybrid contribution -0.123 -0.258 -0.412 0.502 sum -0.015 -12.137 -28.696 31.157 Atomic orbital electron populations 1.22549 0.99038 1.00888 1.00528 1.20149 0.92007 0.95580 0.84716 0.92330 1.42873 1.79782 1.09480 1.07174 1.19047 1.36948 0.95465 0.85741 0.89202 1.24642 1.01350 0.97402 0.95574 1.69702 1.52713 1.35580 1.00276 0.86633 0.78793 0.86727 0.76902 1.21079 1.21732 1.20046 1.21843 1.01094 0.94178 0.95706 0.90636 1.21593 1.01251 0.99083 0.93231 1.21930 1.01134 0.95194 0.99065 1.21782 1.00935 0.93443 0.85558 1.48126 1.60377 1.17827 1.08283 1.20142 0.78214 0.81356 0.90640 1.90790 1.52728 1.61578 1.33574 1.22282 0.98606 0.86429 0.96003 1.88124 1.79292 1.30511 1.29315 1.21363 0.98468 0.90153 0.87699 1.19946 0.93798 0.94351 0.97290 1.22112 0.95349 0.99683 0.99841 1.22801 1.00204 0.87960 0.95045 1.67672 1.06266 1.32175 1.13010 1.22793 0.90999 0.97510 0.94783 1.22092 1.01209 0.93357 1.00387 1.21879 0.99701 0.93780 0.85280 0.92342 0.93977 0.93373 0.80502 0.93108 0.91284 0.91262 0.91464 0.90701 0.90402 0.90974 0.90217 0.90133 0.91673 0.91631 0.84508 0.82443 0.82487 0.84568 0.90645 0.88848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 8.77 37.16 0.33 -2.49 16 2 C 0.19 3.42 2.67 -67.93 -0.18 3.24 16 3 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 4 N -0.75 -17.90 4.86 -53.42 -0.26 -18.16 16 5 C -0.24 -6.90 10.41 -15.06 -0.16 -7.05 16 6 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 7 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 8 N -0.93 -29.98 13.97 55.49 0.78 -29.20 16 9 Si 0.88 23.57 27.73 -169.99 -4.71 18.86 16 10 H -0.28 -7.66 7.11 56.52 0.40 -7.25 16 11 H -0.29 -7.85 7.11 56.52 0.40 -7.45 16 12 H -0.27 -7.16 6.52 56.52 0.37 -6.79 16 13 C -0.11 -1.61 2.27 -90.50 -0.21 -1.82 16 14 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 15 C -0.11 -1.21 4.89 -26.69 -0.13 -1.34 16 16 C -0.13 -1.08 6.08 -26.61 -0.16 -1.25 16 17 C 0.11 0.83 6.34 -3.71 -0.02 0.80 16 18 N -0.61 -7.62 2.97 -172.77 -0.51 -8.13 16 19 C 0.51 7.34 7.77 -10.99 -0.09 7.25 16 20 O -0.51 -10.32 15.91 -14.36 -0.23 -10.55 16 21 C 0.05 0.44 4.76 36.00 0.17 0.61 16 22 O -0.35 -4.23 9.86 -55.14 -0.54 -4.78 16 23 C 0.10 0.77 6.11 36.01 0.22 0.99 16 24 C -0.05 -0.42 5.55 -104.32 -0.58 -0.99 16 25 C -0.15 -1.32 9.82 -39.44 -0.39 -1.71 16 26 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 27 N -0.48 -5.16 10.36 -13.25 -0.14 -5.30 16 28 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 29 C -0.15 -1.29 9.82 -39.44 -0.39 -1.68 16 30 C 0.11 1.76 5.18 -3.71 -0.02 1.74 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.56 6.59 -51.93 -0.34 0.21 16 33 H 0.05 0.79 6.23 -51.93 -0.32 0.47 16 34 H 0.36 8.84 4.33 -40.82 -0.18 8.66 16 35 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 36 H 0.07 0.69 6.63 -51.93 -0.34 0.34 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.08 0.39 5.93 -51.93 -0.31 0.08 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.51 7.94 -51.93 -0.41 0.10 16 43 H 0.08 0.55 7.69 -51.93 -0.40 0.15 16 44 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 45 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 46 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 47 H 0.16 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 50 H 0.08 1.09 6.06 -51.93 -0.31 0.77 16 51 H 0.09 1.81 5.82 -51.93 -0.30 1.51 16 LS Contribution 403.67 15.07 6.08 6.08 Total: -1.00 -38.32 403.67 -9.63 -47.95 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -8.00 Total: 5.47 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.09 Total: -2.24 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.14 Total: -60.79 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.77 Total: -15.33 kcal Atomic # 14 Polarization: 23.57 SS G_CDS: -4.71 Total: 18.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -38.32 -9.63 -47.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271666824.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.378 kcal (2) G-P(sol) polarization free energy of solvation -38.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds