Wall clock time and date at job start Wed Apr 1 2020 04:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47120 * 2 1 4 4 N 1.46505 * 109.46882 * 120.00126 * 2 1 3 5 5 C 1.36935 * 119.99728 * 275.00185 * 4 2 1 6 6 H 1.07999 * 120.00343 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99634 * 180.02562 * 5 4 2 8 8 N 1.31621 * 119.99805 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00169 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.47080 * 90.00176 * 9 7 5 11 11 H 1.48497 * 109.47079 * 209.99843 * 9 7 5 12 12 H 1.48496 * 109.47217 * 330.00148 * 9 7 5 13 13 C 1.53004 * 109.47253 * 239.99834 * 2 1 3 14 14 H 1.09002 * 109.52323 * 184.92498 * 13 2 1 15 15 C 1.53041 * 109.49660 * 64.84132 * 13 2 1 16 16 C 1.53033 * 109.53898 * 178.68381 * 15 13 2 17 17 C 1.53192 * 109.31270 * 61.36218 * 16 15 13 18 18 N 1.46926 * 108.77820 * 305.36633 * 17 16 15 19 19 C 1.34773 * 120.62904 * 233.58715 * 18 17 16 20 20 O 1.21285 * 119.99916 * 180.02562 * 19 18 17 21 21 C 1.50691 * 120.00401 * 359.97438 * 19 18 17 22 22 O 1.42900 * 109.47487 * 180.02562 * 21 19 18 23 23 C 1.42906 * 114.00257 * 180.02562 * 22 21 19 24 24 C 1.50699 * 109.46971 * 180.02562 * 23 22 21 25 25 C 1.38657 * 120.78902 * 269.71751 * 24 23 22 26 26 C 1.38201 * 119.16036 * 179.75605 * 25 24 23 27 27 N 1.31866 * 120.76518 * 0.53519 * 26 25 24 28 28 C 1.31863 * 121.72703 * 359.73405 * 27 26 25 29 29 C 1.38208 * 120.76614 * 359.97438 * 28 27 26 30 30 C 1.46927 * 118.73580 * 53.60911 * 18 17 16 31 31 H 1.08994 * 109.47213 * 300.00481 * 1 2 3 32 32 H 1.09001 * 109.47062 * 60.00025 * 1 2 3 33 33 H 1.09001 * 109.47386 * 179.97438 * 1 2 3 34 34 H 0.97002 * 119.99804 * 94.99977 * 4 2 1 35 35 H 0.96996 * 119.99770 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.46121 * 298.70159 * 15 13 2 37 37 H 1.09004 * 109.46035 * 58.67146 * 15 13 2 38 38 H 1.09000 * 109.49457 * 301.41562 * 16 15 13 39 39 H 1.08995 * 109.50116 * 181.31732 * 16 15 13 40 40 H 1.09006 * 109.58809 * 185.57967 * 17 16 15 41 41 H 1.09002 * 109.58657 * 65.15954 * 17 16 15 42 42 H 1.09004 * 109.47604 * 300.00071 * 21 19 18 43 43 H 1.09003 * 109.47185 * 60.00195 * 21 19 18 44 44 H 1.08997 * 109.46815 * 299.99764 * 23 22 21 45 45 H 1.08996 * 109.47185 * 59.99824 * 23 22 21 46 46 H 1.08003 * 120.41372 * 0.02562 * 25 24 23 47 47 H 1.08006 * 119.61284 * 180.29068 * 26 25 24 48 48 H 1.08001 * 119.61951 * 180.02562 * 28 27 26 49 49 H 1.07996 * 120.41961 * 180.02562 * 29 28 27 50 50 H 1.08997 * 109.58859 * 66.17990 * 30 18 17 51 51 H 1.09001 * 109.58530 * 186.46228 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0404 2.4242 7 6 2.6121 -0.6618 3.5090 8 7 2.7382 -0.0051 4.6427 9 14 3.0564 -2.4742 3.4251 10 1 4.4890 -2.6164 3.0608 11 1 2.8174 -3.1042 4.7484 12 1 2.2161 -3.1429 2.3995 13 6 2.0400 -0.7213 -1.2492 14 1 3.1265 -0.7988 -1.2071 15 6 1.6321 0.0665 -2.4963 16 6 2.1699 -0.6367 -3.7446 17 6 1.5608 -2.0392 -3.8380 18 7 1.8248 -2.7541 -2.5818 19 6 2.4180 -3.9642 -2.5920 20 8 2.6301 -4.5445 -1.5483 21 6 2.8166 -4.5970 -3.9002 22 8 3.4210 -5.8676 -3.6503 23 6 3.8385 -6.5552 -4.8315 24 6 4.4576 -7.8756 -4.4517 25 6 5.8183 -7.9766 -4.2049 26 6 6.3497 -9.2032 -3.8541 27 7 5.5807 -10.2705 -3.7635 28 6 4.2841 -10.2127 -3.9964 29 6 3.6811 -9.0194 -4.3462 30 6 1.4295 -2.1248 -1.3144 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2489 -1.6319 1.1526 35 1 3.0615 -0.4624 5.4347 36 1 0.5449 0.1224 -2.5510 37 1 2.0450 1.0738 -2.4407 38 1 3.2551 -0.7149 -3.6789 39 1 1.8990 -0.0627 -4.6307 40 1 2.0146 -2.5801 -4.6685 41 1 0.4850 -1.9608 -3.9947 42 1 1.9323 -4.7320 -4.5231 43 1 3.5280 -3.9508 -4.4146 44 1 2.9756 -6.7303 -5.4740 45 1 4.5714 -5.9496 -5.3645 46 1 6.4539 -7.1069 -4.2816 47 1 7.4079 -9.2892 -3.6556 48 1 3.6862 -11.1082 -3.9119 49 1 2.6186 -8.9784 -4.5353 50 1 0.3430 -2.0533 -1.2652 51 1 1.7944 -2.7234 -0.4797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271666824.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:37 Heat of formation + Delta-G solvation = -53.243264 kcal Electronic energy + Delta-G solvation = -30474.195632 eV Core-core repulsion = 26373.040051 eV Total energy + Delta-G solvation = -4101.155581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46176 -41.10982 -39.51528 -38.43747 -37.06150 -34.74335 -34.22879 -33.33636 -32.18095 -31.98824 -30.33206 -29.06485 -27.44231 -26.27123 -25.71814 -24.45828 -24.44383 -23.01787 -22.32624 -21.06411 -19.90595 -19.62344 -18.61021 -17.79624 -17.73420 -17.43664 -16.93937 -16.83736 -16.63002 -16.53745 -16.04640 -15.82307 -15.58926 -15.22390 -15.00507 -14.77562 -14.62536 -14.52445 -14.40157 -14.28946 -14.00303 -13.90885 -13.53638 -13.25338 -13.11782 -12.99357 -12.81314 -12.66247 -12.48935 -12.36761 -12.05310 -11.90528 -11.87334 -11.76712 -11.40825 -11.27040 -11.03327 -10.90622 -10.78958 -10.66973 -10.50063 -10.12502 -9.64035 -9.34273 -8.07785 -5.37718 0.10589 0.16286 1.28888 1.32713 1.37784 1.51703 1.71443 2.40260 2.64486 3.06029 3.24740 3.44271 3.52564 3.56029 3.76215 3.78677 3.81812 3.88898 4.03124 4.08906 4.11125 4.14391 4.17131 4.24344 4.30996 4.37211 4.40568 4.43431 4.58610 4.60003 4.67330 4.70407 4.81283 4.84924 4.85502 4.90251 4.95595 5.06815 5.08264 5.16987 5.22386 5.30505 5.36615 5.44744 5.51649 5.65943 5.72283 5.75488 5.98308 6.18575 6.40095 6.96838 7.04262 7.13093 7.83235 7.98771 9.14176 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.002572 C = 0.002148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.907149 B =10883.328828 C =13030.770407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.174 3.826 3 H 0.051 0.949 4 N -0.757 5.757 5 C -0.217 4.217 6 H 0.067 0.933 7 C -0.056 4.056 8 N -0.980 5.980 9 Si 0.938 3.062 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.269 1.269 13 C -0.095 4.095 14 H 0.051 0.949 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.097 3.903 18 N -0.606 5.606 19 C 0.497 3.503 20 O -0.588 6.588 21 C 0.054 3.946 22 O -0.397 6.397 23 C 0.099 3.901 24 C -0.063 4.063 25 C -0.159 4.159 26 C 0.080 3.920 27 N -0.512 5.512 28 C 0.081 3.919 29 C -0.156 4.156 30 C 0.118 3.882 31 H 0.030 0.970 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.359 0.641 35 H 0.257 0.743 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.153 0.847 47 H 0.175 0.825 48 H 0.177 0.823 49 H 0.156 0.844 50 H 0.086 0.914 51 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -10.711 -34.349 36.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.066 3.934 3 H 0.069 0.931 4 N -0.401 5.401 5 C -0.349 4.349 6 H 0.085 0.915 7 C -0.248 4.248 8 N -0.632 5.632 9 Si 0.768 3.232 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.195 1.195 13 C -0.116 4.116 14 H 0.069 0.931 15 C -0.148 4.148 16 C -0.167 4.167 17 C -0.023 4.023 18 N -0.339 5.339 19 C 0.286 3.714 20 O -0.468 6.468 21 C -0.025 4.025 22 O -0.317 6.317 23 C 0.024 3.976 24 C -0.071 4.071 25 C -0.178 4.178 26 C -0.076 4.076 27 N -0.222 5.222 28 C -0.075 4.075 29 C -0.176 4.176 30 C -0.004 4.004 31 H 0.049 0.951 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.191 0.809 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.133 0.867 44 H 0.110 0.890 45 H 0.107 0.893 46 H 0.171 0.829 47 H 0.192 0.808 48 H 0.194 0.806 49 H 0.174 0.826 50 H 0.104 0.896 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.071 -11.710 -33.277 35.294 hybrid contribution 0.195 -0.197 1.020 1.057 sum -0.876 -11.907 -32.257 34.396 Atomic orbital electron populations 1.22385 0.96922 1.01190 1.01325 1.20499 0.93421 0.95133 0.84345 0.93120 1.43025 1.80054 1.09410 1.07569 1.19086 1.34024 0.94566 0.87185 0.91538 1.25255 1.02980 1.00967 0.95612 1.69831 1.55207 1.37108 1.01018 0.85674 0.78269 0.82609 0.76683 1.21307 1.21771 1.19494 1.21663 0.99361 0.94427 0.96100 0.93087 1.21608 1.02396 0.98724 0.92059 1.21934 1.00547 0.95451 0.98802 1.22245 1.02830 0.93160 0.84092 1.48241 1.59248 1.17596 1.08850 1.21232 0.77051 0.81359 0.91762 1.90754 1.55844 1.63623 1.36538 1.22405 1.01024 0.86000 0.93064 1.88069 1.79956 1.31695 1.31946 1.21568 1.00086 0.89250 0.86727 1.20341 0.94086 0.95482 0.97179 1.22375 0.95889 1.00018 0.99552 1.23172 1.01111 0.88108 0.95185 1.67675 1.07261 1.33148 1.14134 1.23209 0.90866 0.98750 0.94701 1.22379 1.02251 0.93103 0.99850 1.21592 0.99958 0.93144 0.85751 0.95078 0.89599 0.93279 0.80854 0.93391 0.89646 0.90942 0.92301 0.86927 0.86532 0.88752 0.86125 0.86688 0.88959 0.89320 0.82931 0.80815 0.80600 0.82588 0.89602 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 8.77 71.98 0.63 -4.43 16 2 C 0.17 6.38 2.67 44.99 0.12 6.50 16 3 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 4 N -0.76 -37.05 4.86 -322.93 -1.57 -38.62 16 5 C -0.22 -12.78 10.41 84.03 0.87 -11.90 16 6 H 0.07 4.17 8.06 -2.91 -0.02 4.15 16 7 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 8 N -0.98 -65.04 13.97 21.65 0.30 -64.74 16 9 Si 0.94 50.71 27.73 68.60 1.90 52.61 16 10 H -0.29 -15.42 7.11 99.48 0.71 -14.72 16 11 H -0.29 -15.63 7.11 99.48 0.71 -14.93 16 12 H -0.27 -14.14 6.52 99.48 0.65 -13.49 16 13 C -0.10 -2.74 2.27 -10.71 -0.02 -2.76 16 14 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 15 C -0.11 -1.93 4.89 30.62 0.15 -1.78 16 16 C -0.13 -1.40 6.08 30.67 0.19 -1.22 16 17 C 0.10 0.98 6.34 86.36 0.55 1.53 16 18 N -0.61 -13.57 2.97 -818.91 -2.43 -16.01 16 19 C 0.50 13.53 7.77 87.65 0.68 14.21 16 20 O -0.59 -24.35 15.91 15.99 0.25 -24.10 16 21 C 0.05 0.80 4.76 71.23 0.34 1.14 16 22 O -0.40 -8.53 9.86 -129.94 -1.28 -9.81 16 23 C 0.10 1.20 6.11 71.24 0.44 1.63 16 24 C -0.06 -1.04 5.55 -19.67 -0.11 -1.15 16 25 C -0.16 -2.64 9.82 22.36 0.22 -2.43 16 26 C 0.08 1.47 11.18 84.68 0.95 2.42 16 27 N -0.51 -11.00 10.36 -195.84 -2.03 -13.03 16 28 C 0.08 1.43 11.18 84.68 0.95 2.38 16 29 C -0.16 -2.48 9.82 22.36 0.22 -2.26 16 30 C 0.12 3.53 5.18 86.36 0.45 3.98 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.98 6.59 -2.39 -0.02 1.96 16 33 H 0.05 1.55 6.23 -2.39 -0.01 1.53 16 34 H 0.36 18.05 4.33 -92.71 -0.40 17.65 16 35 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 36 H 0.09 1.25 6.63 -2.39 -0.02 1.23 16 37 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.12 0.34 5.93 -2.38 -0.01 0.32 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.12 0.81 7.94 -2.38 -0.02 0.79 16 43 H 0.12 0.91 7.69 -2.39 -0.02 0.90 16 44 H 0.09 0.58 8.10 -2.39 -0.02 0.56 16 45 H 0.09 0.63 8.10 -2.39 -0.02 0.61 16 46 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 47 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 48 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 49 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 50 H 0.09 2.33 6.06 -2.39 -0.01 2.32 16 51 H 0.04 1.75 5.82 -2.39 -0.01 1.74 16 Total: -1.00 -91.65 403.67 2.70 -88.96 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.47 Total: 21.91 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 7.08 Total: 2.83 kcal Atomic # 7 Polarization: -126.66 SS G_CDS: -5.73 Total: -132.39 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -1.03 Total: -33.91 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 1.90 Total: 52.61 kcal Total: -91.65 2.70 -88.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271666824.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.714 kcal (2) G-P(sol) polarization free energy of solvation -91.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds