Wall clock time and date at job start Wed Apr 1 2020 04:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47162 * 2 1 4 4 N 1.46503 * 109.47197 * 240.00416 * 2 1 3 5 5 C 1.36938 * 120.00314 * 84.99710 * 4 2 1 6 6 H 1.07998 * 119.99786 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00274 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47015 * 90.00480 * 9 7 5 11 11 H 1.48505 * 109.47224 * 210.00631 * 9 7 5 12 12 H 1.48502 * 109.47036 * 330.00542 * 9 7 5 13 13 C 1.53004 * 109.47213 * 120.00439 * 2 1 3 14 14 H 1.09002 * 109.51109 * 174.89432 * 13 2 1 15 15 C 1.53294 * 109.51171 * 295.00095 * 13 2 1 16 16 N 1.47145 * 108.38383 * 172.27517 * 15 13 2 17 17 C 1.34785 * 120.98026 * 129.44369 * 16 15 13 18 18 O 1.21278 * 119.99833 * 354.22696 * 17 16 15 19 19 C 1.50700 * 120.00035 * 174.23025 * 17 16 15 20 20 C 1.52999 * 109.47189 * 185.31766 * 19 17 16 21 21 C 1.52995 * 109.46965 * 305.31858 * 19 17 16 22 22 C 1.50700 * 109.47067 * 65.31636 * 19 17 16 23 23 C 1.38673 * 120.41970 * 187.64790 * 22 19 17 24 24 C 1.38630 * 118.42209 * 180.02562 * 23 22 19 25 25 C 1.38229 * 119.15979 * 0.02562 * 24 23 22 26 26 N 1.31845 * 120.76308 * 359.97438 * 25 24 23 27 27 C 1.31887 * 121.73076 * 359.71259 * 26 25 24 28 28 C 1.47147 * 118.03858 * 309.46399 * 16 15 13 29 29 C 1.53293 * 108.38580 * 50.53541 * 28 16 15 30 30 O 1.42962 * 109.26422 * 307.67290 * 29 28 16 31 31 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47301 * 299.99482 * 1 2 3 33 33 H 1.09000 * 109.46865 * 59.99664 * 1 2 3 34 34 H 0.97000 * 120.00157 * 265.00264 * 4 2 1 35 35 H 0.97001 * 119.99850 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.68417 * 52.54926 * 15 13 2 37 37 H 1.08999 * 109.67893 * 292.00039 * 15 13 2 38 38 H 1.08994 * 109.47161 * 64.89882 * 20 19 17 39 39 H 1.09000 * 109.46925 * 184.89763 * 20 19 17 40 40 H 1.08998 * 109.46971 * 304.89381 * 20 19 17 41 41 H 1.09001 * 109.47668 * 54.96784 * 21 19 17 42 42 H 1.09007 * 109.47109 * 174.96193 * 21 19 17 43 43 H 1.09002 * 109.47376 * 294.96029 * 21 19 17 44 44 H 1.08000 * 120.78964 * 0.02562 * 23 22 19 45 45 H 1.08003 * 120.41890 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.61586 * 180.02562 * 25 24 23 47 47 H 1.07996 * 119.61960 * 180.30998 * 27 26 25 48 48 H 1.09000 * 109.68162 * 290.81055 * 28 16 15 49 49 H 1.09001 * 109.68156 * 170.25631 * 28 16 15 50 50 H 1.09000 * 109.51493 * 67.62030 * 29 28 16 51 51 H 1.08994 * 109.51641 * 187.72456 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6123 -0.6615 -3.5091 8 7 2.9254 -1.9386 -3.4500 9 14 2.7913 0.2705 -5.1180 10 1 4.1536 0.8556 -5.2021 11 1 2.5814 -0.6606 -6.2556 12 1 1.7813 1.3577 -5.1752 13 6 2.0400 -0.7214 1.2492 14 1 3.1262 -0.8016 1.2053 15 6 1.6349 0.0695 2.4984 16 7 1.9708 -0.7332 3.6850 17 6 2.6784 -0.2041 4.7029 18 8 3.1375 0.9141 4.6055 19 6 2.8989 -1.0022 5.9621 20 6 3.6104 -0.1315 6.9997 21 6 1.5493 -1.4593 6.5191 22 6 3.7480 -2.2076 5.6506 23 6 3.9603 -3.1843 6.6118 24 6 4.7488 -4.2754 6.2809 25 6 5.2938 -4.3527 5.0130 26 7 5.0707 -3.4049 4.1240 27 6 4.3209 -2.3560 4.4019 28 6 1.5120 -2.1307 3.7273 29 6 1.9230 -2.8144 2.4183 30 8 1.4667 -2.0305 1.3132 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6317 -1.1528 35 1 3.2488 -2.3959 -4.2420 36 1 0.5626 0.2638 2.4781 37 1 2.1791 1.0135 2.5276 38 1 2.9595 0.6934 7.2895 39 1 3.8476 -0.7328 7.8773 40 1 4.5309 0.2651 6.5714 41 1 1.0039 -2.0043 5.7486 42 1 1.7124 -2.1104 7.3780 43 1 0.9700 -0.5891 6.8277 44 1 3.5217 -3.0970 7.5949 45 1 4.9355 -5.0548 7.0049 46 1 5.9089 -5.1998 4.7471 47 1 4.1566 -1.6022 3.6462 48 1 0.4272 -2.1579 3.8308 49 1 1.9747 -2.6436 4.5704 50 1 3.0087 -2.9022 2.3786 51 1 1.4755 -3.8070 2.3698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276780106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:45 Heat of formation + Delta-G solvation = -10.033663 kcal Electronic energy + Delta-G solvation = -32674.171577 eV Core-core repulsion = 28574.889705 eV Total energy + Delta-G solvation = -4099.281872 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.74394 -39.85813 -38.61172 -36.11026 -35.42486 -34.55050 -32.59887 -32.25182 -30.66795 -30.29414 -28.50927 -27.77666 -27.27349 -25.22166 -24.36074 -23.76597 -23.46287 -22.72815 -21.16732 -19.64090 -19.18152 -17.90284 -17.33919 -16.99157 -16.72836 -16.22752 -16.01475 -15.38465 -15.26090 -15.11091 -14.64461 -14.50196 -14.29171 -14.09502 -14.01676 -13.54719 -13.33284 -13.28459 -12.94609 -12.91578 -12.71607 -12.63757 -12.49370 -12.19110 -12.10249 -11.87627 -11.65310 -11.57773 -11.27774 -11.09044 -10.81731 -10.68570 -10.50627 -10.25802 -10.12771 -10.02222 -9.81363 -9.79508 -9.64876 -9.58942 -9.22078 -8.85469 -8.49420 -6.88937 -5.69011 -2.97811 0.73058 0.93693 2.36801 2.70835 3.46443 3.48253 3.53178 3.54862 3.97836 3.98551 4.00439 4.35030 4.47378 4.56601 4.59342 4.61269 4.63501 4.75211 4.81348 4.89836 5.06790 5.11030 5.19252 5.19957 5.30940 5.32649 5.38620 5.42913 5.48421 5.53119 5.63421 5.65833 5.68114 5.76607 5.78967 5.82726 5.85046 5.91734 6.00628 6.01434 6.21598 6.34317 6.35346 6.49324 6.67927 6.84986 7.16904 7.20653 7.49723 7.70129 7.75720 7.94888 8.48993 9.60839 10.18640 10.55250 11.53345 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003015 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.248488 B = 9285.055480 C =10124.999232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.239 4.239 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.930 5.930 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.075 3.925 14 H 0.064 0.936 15 C 0.080 3.920 16 N -0.609 5.609 17 C 0.524 3.476 18 O -0.530 6.530 19 C -0.036 4.036 20 C -0.124 4.124 21 C -0.155 4.155 22 C -0.131 4.131 23 C -0.066 4.066 24 C -0.170 4.170 25 C 0.098 3.902 26 N -0.472 5.472 27 C 0.106 3.894 28 C 0.061 3.939 29 C 0.041 3.959 30 O -0.355 6.355 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.389 0.611 35 H 0.254 0.746 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.137 0.863 45 H 0.137 0.863 46 H 0.158 0.842 47 H 0.153 0.847 48 H 0.079 0.921 49 H 0.099 0.901 50 H 0.060 0.940 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.443 -4.723 27.261 27.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.075 3.925 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.578 5.578 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.016 3.984 14 H 0.082 0.918 15 C -0.042 4.042 16 N -0.343 5.343 17 C 0.311 3.689 18 O -0.405 6.405 19 C -0.040 4.040 20 C -0.181 4.181 21 C -0.212 4.212 22 C -0.133 4.133 23 C -0.092 4.092 24 C -0.190 4.190 25 C -0.059 4.059 26 N -0.179 5.179 27 C -0.051 4.051 28 C -0.062 4.062 29 C -0.037 4.037 30 O -0.273 6.273 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.224 0.776 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.175 0.825 47 H 0.170 0.830 48 H 0.097 0.903 49 H 0.116 0.884 50 H 0.078 0.922 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.937 -4.136 26.073 26.415 hybrid contribution -0.059 0.150 0.134 0.210 sum -0.996 -3.986 26.206 26.526 Atomic orbital electron populations 1.22412 0.98696 1.01594 0.99485 1.20187 0.92791 0.94586 0.84978 0.92327 1.42353 1.77836 1.10978 1.04862 1.19241 1.36594 0.93828 0.87366 0.91202 1.24735 1.02212 0.95953 0.97994 1.69684 1.50735 1.08608 1.28772 0.86213 0.77758 0.78581 0.83776 1.21780 1.21843 1.20797 1.22995 0.97671 0.83053 0.94680 0.91829 1.22546 1.02031 0.95882 0.83722 1.48185 1.54540 1.12699 1.18905 1.20336 0.77600 0.86861 0.84059 1.90715 1.48907 1.19897 1.81019 1.19699 0.96499 0.93111 0.94649 1.21690 1.01219 0.98733 0.96466 1.22268 0.94336 1.02530 1.02098 1.20548 1.00549 0.96474 0.95733 1.21362 0.96208 0.92616 0.99048 1.22156 0.99153 0.99222 0.98495 1.22915 0.96610 0.96820 0.89509 1.67810 1.13276 1.01634 1.35199 1.22958 0.91945 0.95427 0.94755 1.22899 1.00722 0.82072 1.00499 1.22990 1.00128 0.95097 0.85469 1.88129 1.67468 1.25788 1.45942 0.92452 0.94728 0.92914 0.77637 0.93589 0.89956 0.88079 0.91352 0.91819 0.91341 0.90560 0.91076 0.91230 0.84562 0.84509 0.82499 0.82956 0.90276 0.88357 0.92159 0.88135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.06 37.16 0.34 -2.67 16 2 C 0.19 3.77 2.77 -67.93 -0.19 3.58 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -18.55 5.10 -53.42 -0.27 -18.82 16 5 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 9 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 10 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 11 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.08 1.31 2.60 -26.58 -0.07 1.24 16 14 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 15 C 0.08 1.17 5.84 -3.54 -0.02 1.15 16 16 N -0.61 -7.68 2.35 -172.29 -0.40 -8.08 16 17 C 0.52 6.76 4.97 -10.98 -0.05 6.71 16 18 O -0.53 -8.64 15.36 5.56 0.09 -8.55 16 19 C -0.04 -0.33 0.60 -156.82 -0.09 -0.43 16 20 C -0.12 -1.08 7.81 37.16 0.29 -0.79 16 21 C -0.16 -1.05 7.96 37.15 0.30 -0.76 16 22 C -0.13 -1.23 3.09 -104.48 -0.32 -1.55 16 23 C -0.07 -0.47 8.84 -39.28 -0.35 -0.81 16 24 C -0.17 -1.16 10.11 -39.44 -0.40 -1.56 16 25 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 26 N -0.47 -5.86 10.36 -13.25 -0.14 -6.00 16 27 C 0.11 1.29 7.15 -17.55 -0.13 1.16 16 28 C 0.06 0.65 3.71 -3.54 -0.01 0.64 16 29 C 0.04 0.55 6.76 37.31 0.25 0.80 16 30 O -0.36 -6.14 9.26 -35.23 -0.33 -6.47 16 31 H 0.06 1.12 7.56 -51.93 -0.39 0.73 16 32 H 0.03 0.53 6.42 -51.93 -0.33 0.19 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.39 10.88 7.59 -40.82 -0.31 10.57 16 35 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.08 1.12 6.28 -51.93 -0.33 0.80 16 37 H 0.10 1.55 7.06 -51.93 -0.37 1.18 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.40 7.80 -51.93 -0.41 0.00 16 40 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 41 H 0.08 0.52 4.54 -51.93 -0.24 0.29 16 42 H 0.07 0.33 6.88 -51.93 -0.36 -0.02 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.14 0.60 7.17 -52.49 -0.38 0.22 16 45 H 0.14 0.53 8.06 -52.48 -0.42 0.11 16 46 H 0.16 1.05 8.06 -52.48 -0.42 0.62 16 47 H 0.15 2.18 5.49 -52.49 -0.29 1.90 16 48 H 0.08 0.76 7.86 -51.93 -0.41 0.35 16 49 H 0.10 0.89 3.36 -51.93 -0.17 0.72 16 50 H 0.06 0.88 6.26 -51.93 -0.33 0.55 16 51 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -34.19 387.44 -8.05 -42.24 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.63 Total: 10.01 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.90 Total: 0.03 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -0.09 Total: -60.90 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.24 Total: -15.02 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.19 -8.05 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276780106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.208 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds