Wall clock time and date at job start Wed Apr 1 2020 04:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47162 * 2 1 4 4 N 1.46503 * 109.47197 * 240.00416 * 2 1 3 5 5 C 1.36938 * 120.00314 * 84.99710 * 4 2 1 6 6 H 1.07998 * 119.99786 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00274 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99685 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00086 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47015 * 90.00480 * 9 7 5 11 11 H 1.48505 * 109.47224 * 210.00631 * 9 7 5 12 12 H 1.48502 * 109.47036 * 330.00542 * 9 7 5 13 13 C 1.53004 * 109.47213 * 120.00439 * 2 1 3 14 14 H 1.09002 * 109.51109 * 174.89432 * 13 2 1 15 15 C 1.53294 * 109.51171 * 295.00095 * 13 2 1 16 16 N 1.47145 * 108.38383 * 172.27517 * 15 13 2 17 17 C 1.34785 * 120.98026 * 129.44369 * 16 15 13 18 18 O 1.21278 * 119.99833 * 354.22696 * 17 16 15 19 19 C 1.50700 * 120.00035 * 174.23025 * 17 16 15 20 20 C 1.52999 * 109.47189 * 185.31766 * 19 17 16 21 21 C 1.52995 * 109.46965 * 305.31858 * 19 17 16 22 22 C 1.50700 * 109.47067 * 65.31636 * 19 17 16 23 23 C 1.38673 * 120.41970 * 187.64790 * 22 19 17 24 24 C 1.38630 * 118.42209 * 180.02562 * 23 22 19 25 25 C 1.38229 * 119.15979 * 0.02562 * 24 23 22 26 26 N 1.31845 * 120.76308 * 359.97438 * 25 24 23 27 27 C 1.31887 * 121.73076 * 359.71259 * 26 25 24 28 28 C 1.47147 * 118.03858 * 309.46399 * 16 15 13 29 29 C 1.53293 * 108.38580 * 50.53541 * 28 16 15 30 30 O 1.42962 * 109.26422 * 307.67290 * 29 28 16 31 31 H 1.09000 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47301 * 299.99482 * 1 2 3 33 33 H 1.09000 * 109.46865 * 59.99664 * 1 2 3 34 34 H 0.97000 * 120.00157 * 265.00264 * 4 2 1 35 35 H 0.97001 * 119.99850 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.68417 * 52.54926 * 15 13 2 37 37 H 1.08999 * 109.67893 * 292.00039 * 15 13 2 38 38 H 1.08994 * 109.47161 * 64.89882 * 20 19 17 39 39 H 1.09000 * 109.46925 * 184.89763 * 20 19 17 40 40 H 1.08998 * 109.46971 * 304.89381 * 20 19 17 41 41 H 1.09001 * 109.47668 * 54.96784 * 21 19 17 42 42 H 1.09007 * 109.47109 * 174.96193 * 21 19 17 43 43 H 1.09002 * 109.47376 * 294.96029 * 21 19 17 44 44 H 1.08000 * 120.78964 * 0.02562 * 23 22 19 45 45 H 1.08003 * 120.41890 * 179.97438 * 24 23 22 46 46 H 1.08004 * 119.61586 * 180.02562 * 25 24 23 47 47 H 1.07996 * 119.61960 * 180.30998 * 27 26 25 48 48 H 1.09000 * 109.68162 * 290.81055 * 28 16 15 49 49 H 1.09001 * 109.68156 * 170.25631 * 28 16 15 50 50 H 1.09000 * 109.51493 * 67.62030 * 29 28 16 51 51 H 1.08994 * 109.51641 * 187.72456 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8926 1.0406 -2.4242 7 6 2.6123 -0.6615 -3.5091 8 7 2.9254 -1.9386 -3.4500 9 14 2.7913 0.2705 -5.1180 10 1 4.1536 0.8556 -5.2021 11 1 2.5814 -0.6606 -6.2556 12 1 1.7813 1.3577 -5.1752 13 6 2.0400 -0.7214 1.2492 14 1 3.1262 -0.8016 1.2053 15 6 1.6349 0.0695 2.4984 16 7 1.9708 -0.7332 3.6850 17 6 2.6784 -0.2041 4.7029 18 8 3.1375 0.9141 4.6055 19 6 2.8989 -1.0022 5.9621 20 6 3.6104 -0.1315 6.9997 21 6 1.5493 -1.4593 6.5191 22 6 3.7480 -2.2076 5.6506 23 6 3.9603 -3.1843 6.6118 24 6 4.7488 -4.2754 6.2809 25 6 5.2938 -4.3527 5.0130 26 7 5.0707 -3.4049 4.1240 27 6 4.3209 -2.3560 4.4019 28 6 1.5120 -2.1307 3.7273 29 6 1.9230 -2.8144 2.4183 30 8 1.4667 -2.0305 1.3132 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2490 -1.6317 -1.1528 35 1 3.2488 -2.3959 -4.2420 36 1 0.5626 0.2638 2.4781 37 1 2.1791 1.0135 2.5276 38 1 2.9595 0.6934 7.2895 39 1 3.8476 -0.7328 7.8773 40 1 4.5309 0.2651 6.5714 41 1 1.0039 -2.0043 5.7486 42 1 1.7124 -2.1104 7.3780 43 1 0.9700 -0.5891 6.8277 44 1 3.5217 -3.0970 7.5949 45 1 4.9355 -5.0548 7.0049 46 1 5.9089 -5.1998 4.7471 47 1 4.1566 -1.6022 3.6462 48 1 0.4272 -2.1579 3.8308 49 1 1.9747 -2.6436 4.5704 50 1 3.0087 -2.9022 2.3786 51 1 1.4755 -3.8070 2.3698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276780106.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:44 Heat of formation + Delta-G solvation = -33.990659 kcal Electronic energy + Delta-G solvation = -32675.210431 eV Core-core repulsion = 28574.889705 eV Total energy + Delta-G solvation = -4100.320726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.61425 -40.78204 -39.81235 -37.24959 -36.78341 -35.75847 -34.34749 -33.07024 -31.89678 -31.32492 -30.04004 -28.81109 -28.18270 -26.58082 -25.60296 -24.84946 -24.48922 -23.86280 -22.22839 -21.14672 -20.12592 -19.29237 -18.69125 -17.95849 -17.81882 -17.27138 -17.06994 -16.78744 -16.32674 -16.18925 -15.97254 -15.73646 -15.36671 -15.19184 -15.15673 -14.77113 -14.56250 -14.22175 -14.13387 -13.99100 -13.86392 -13.61205 -13.39757 -13.20337 -13.10853 -12.96377 -12.84277 -12.80273 -12.49298 -12.43592 -12.30630 -12.20467 -12.15910 -11.86567 -11.66420 -11.57731 -11.19502 -10.95646 -10.85162 -10.71268 -10.36666 -9.93286 -9.64124 -9.02193 -7.92852 -5.22126 0.05225 0.31671 1.38128 1.45808 1.48277 1.56469 1.71079 2.55762 2.70750 2.78598 3.15743 3.30817 3.40399 3.53126 3.60154 3.76378 3.86359 3.88837 3.92856 3.97799 4.03736 4.06507 4.07025 4.22730 4.24448 4.34277 4.42608 4.53119 4.56961 4.59677 4.70592 4.71614 4.73714 4.76606 4.79330 4.83219 4.92219 4.93195 5.07292 5.11190 5.16869 5.21133 5.23530 5.25257 5.31229 5.50143 5.60805 5.72327 6.17361 6.19385 6.28288 6.93914 7.00614 7.34146 8.09487 8.34410 9.30739 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015438 B = 0.003015 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.248488 B = 9285.055480 C =10124.999232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.176 3.824 3 H 0.058 0.942 4 N -0.733 5.733 5 C -0.240 4.240 6 H 0.077 0.923 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.974 3.026 10 H -0.289 1.289 11 H -0.295 1.295 12 H -0.267 1.267 13 C 0.091 3.909 14 H 0.030 0.970 15 C 0.091 3.909 16 N -0.609 5.609 17 C 0.518 3.482 18 O -0.573 6.573 19 C -0.028 4.028 20 C -0.122 4.122 21 C -0.153 4.153 22 C -0.130 4.130 23 C -0.056 4.056 24 C -0.152 4.152 25 C 0.082 3.918 26 N -0.515 5.515 27 C 0.081 3.919 28 C 0.071 3.929 29 C 0.036 3.964 30 O -0.377 6.377 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.374 0.626 35 H 0.250 0.750 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.071 0.929 44 H 0.178 0.822 45 H 0.177 0.823 46 H 0.174 0.826 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.120 0.880 50 H 0.041 0.959 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -5.620 30.974 31.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.067 3.933 3 H 0.075 0.925 4 N -0.374 5.374 5 C -0.372 4.372 6 H 0.095 0.905 7 C -0.270 4.270 8 N -0.620 5.620 9 Si 0.803 3.197 10 H -0.216 1.216 11 H -0.222 1.222 12 H -0.192 1.192 13 C 0.031 3.969 14 H 0.049 0.951 15 C -0.032 4.032 16 N -0.342 5.342 17 C 0.308 3.692 18 O -0.452 6.452 19 C -0.032 4.032 20 C -0.179 4.179 21 C -0.210 4.210 22 C -0.133 4.133 23 C -0.081 4.081 24 C -0.172 4.172 25 C -0.074 4.074 26 N -0.224 5.224 27 C -0.076 4.076 28 C -0.050 4.050 29 C -0.041 4.041 30 O -0.295 6.295 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.206 0.794 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.195 0.805 45 H 0.194 0.806 46 H 0.191 0.809 47 H 0.132 0.868 48 H 0.120 0.880 49 H 0.138 0.862 50 H 0.059 0.941 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.438 -5.009 29.828 30.344 hybrid contribution 0.478 0.369 -0.929 1.108 sum -1.959 -4.640 28.899 29.335 Atomic orbital electron populations 1.22194 0.96553 1.01222 1.00617 1.20433 0.94123 0.94360 0.84337 0.92458 1.42541 1.78351 1.10422 1.06040 1.19658 1.35050 0.94214 0.88295 0.90471 1.25584 1.02943 0.96899 1.01542 1.69857 1.52538 1.10300 1.29347 0.85134 0.77842 0.77459 0.79301 1.21602 1.22185 1.19219 1.22569 0.95537 0.83863 0.94895 0.95145 1.22264 1.02578 0.95009 0.83336 1.48218 1.54496 1.13292 1.18150 1.21154 0.76260 0.86678 0.85097 1.90687 1.50412 1.22106 1.82022 1.19739 0.98347 0.92584 0.92558 1.21708 0.99797 0.99205 0.97196 1.22314 0.92236 1.03260 1.03156 1.20523 1.00410 0.97121 0.95198 1.21793 0.95332 0.91240 0.99776 1.22559 0.97089 0.99692 0.97814 1.23348 0.97184 0.96532 0.90382 1.67675 1.14525 1.02774 1.37408 1.22518 0.94177 0.95387 0.95494 1.22978 1.02017 0.80641 0.99410 1.23197 0.99265 0.95837 0.85840 1.88072 1.67507 1.25802 1.48155 0.93492 0.90904 0.94348 0.79409 0.94148 0.88240 0.89374 0.91416 0.88431 0.94196 0.90540 0.87697 0.90971 0.80503 0.80565 0.80914 0.86771 0.87996 0.86206 0.94109 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 9.06 71.98 0.65 -4.75 16 2 C 0.18 7.42 2.77 44.99 0.12 7.55 16 3 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 4 N -0.73 -39.54 5.10 -322.93 -1.65 -41.18 16 5 C -0.24 -13.96 9.93 84.03 0.83 -13.13 16 6 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 7 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 8 N -0.97 -62.15 13.06 21.65 0.28 -61.86 16 9 Si 0.97 47.97 29.55 68.60 2.03 50.00 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 11 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.09 3.34 2.60 30.69 0.08 3.42 16 14 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 15 C 0.09 2.70 5.84 86.35 0.50 3.21 16 16 N -0.61 -15.37 2.35 -817.38 -1.92 -17.29 16 17 C 0.52 13.48 4.97 87.66 0.44 13.91 16 18 O -0.57 -19.58 15.36 -3.02 -0.05 -19.63 16 19 C -0.03 -0.47 0.60 -53.68 -0.03 -0.50 16 20 C -0.12 -1.88 7.81 71.98 0.56 -1.32 16 21 C -0.15 -1.43 7.96 71.98 0.57 -0.86 16 22 C -0.13 -2.19 3.09 -19.77 -0.06 -2.25 16 23 C -0.06 -0.53 8.84 22.47 0.20 -0.33 16 24 C -0.15 -1.43 10.11 22.36 0.23 -1.20 16 25 C 0.08 1.36 11.18 84.69 0.95 2.31 16 26 N -0.52 -13.19 10.36 -195.84 -2.03 -15.22 16 27 C 0.08 2.02 7.15 84.67 0.60 2.62 16 28 C 0.07 1.43 3.71 86.35 0.32 1.75 16 29 C 0.04 0.97 6.76 72.08 0.49 1.46 16 30 O -0.38 -13.48 9.26 -148.98 -1.38 -14.86 16 31 H 0.05 1.82 7.56 -2.39 -0.02 1.81 16 32 H 0.07 2.11 6.42 -2.39 -0.02 2.09 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.37 22.12 7.59 -92.71 -0.70 21.41 16 35 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.10 2.59 6.28 -2.39 -0.01 2.58 16 37 H 0.09 2.85 7.06 -2.39 -0.02 2.83 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 0.82 7.80 -2.39 -0.02 0.80 16 40 H 0.04 0.84 7.88 -2.39 -0.02 0.82 16 41 H 0.08 0.73 4.54 -2.39 -0.01 0.72 16 42 H 0.10 0.31 6.88 -2.38 -0.02 0.30 16 43 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.18 0.27 7.17 -2.91 -0.02 0.25 16 45 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 46 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 47 H 0.11 3.64 5.49 -2.91 -0.02 3.62 16 48 H 0.10 1.64 7.86 -2.39 -0.02 1.63 16 49 H 0.12 1.92 3.36 -2.39 -0.01 1.91 16 50 H 0.04 1.28 6.26 -2.39 -0.01 1.26 16 51 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 Total: -1.00 -80.80 387.44 2.47 -78.33 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.25 Total: 34.00 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 6.92 Total: 7.71 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -5.31 Total: -135.56 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.43 Total: -34.48 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 2.03 Total: 50.00 kcal Total: -80.80 2.47 -78.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276780106.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.339 kcal (2) G-P(sol) polarization free energy of solvation -80.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds