Wall clock time and date at job start Wed Apr 1 2020 04:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47145 * 2 1 4 4 N 1.46505 * 109.47263 * 240.00123 * 2 1 3 5 5 C 1.36941 * 119.99909 * 85.27345 * 4 2 1 6 6 H 1.07995 * 120.00033 * 359.72794 * 5 4 2 7 7 C 1.38812 * 119.99794 * 179.72534 * 5 4 2 8 8 N 1.31621 * 119.99710 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47452 * 89.99958 * 9 7 5 11 11 H 1.48506 * 109.46811 * 209.99747 * 9 7 5 12 12 H 1.48499 * 109.47033 * 329.99626 * 9 7 5 13 13 C 1.53001 * 109.47469 * 119.99786 * 2 1 3 14 14 H 1.08999 * 109.51167 * 299.90207 * 13 2 1 15 15 C 1.53289 * 109.51339 * 179.74880 * 13 2 1 16 16 N 1.47154 * 108.38424 * 187.77343 * 15 13 2 17 17 C 1.34775 * 120.98582 * 230.50933 * 16 15 13 18 18 O 1.21282 * 119.99809 * 356.45880 * 17 16 15 19 19 C 1.50698 * 120.00050 * 176.44835 * 17 16 15 20 20 C 1.52998 * 109.46965 * 63.17679 * 19 17 16 21 21 C 1.53005 * 109.47041 * 183.17091 * 19 17 16 22 22 C 1.50692 * 109.47603 * 303.17590 * 19 17 16 23 23 C 1.38681 * 120.42019 * 171.76852 * 22 19 17 24 24 C 1.38631 * 118.41661 * 179.78259 * 23 22 19 25 25 C 1.38224 * 119.16421 * 0.47148 * 24 23 22 26 26 N 1.31858 * 120.76414 * 359.76842 * 25 24 23 27 27 C 1.31885 * 121.72452 * 0.02562 * 26 25 24 28 28 C 1.47159 * 118.03339 * 50.53598 * 16 15 13 29 29 C 1.53294 * 108.38296 * 309.46452 * 28 16 15 30 30 O 1.42962 * 109.50769 * 60.00128 * 13 2 1 31 31 H 1.08999 * 109.47190 * 299.99912 * 1 2 3 32 32 H 1.09002 * 109.46990 * 60.00355 * 1 2 3 33 33 H 1.08998 * 109.46665 * 180.02562 * 1 2 3 34 34 H 0.96998 * 119.99473 * 264.99801 * 4 2 1 35 35 H 0.97003 * 119.99371 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.68297 * 307.49584 * 15 13 2 37 37 H 1.09004 * 109.68542 * 68.05120 * 15 13 2 38 38 H 1.09005 * 109.47212 * 68.15748 * 20 19 17 39 39 H 1.08998 * 109.47392 * 188.15571 * 20 19 17 40 40 H 1.08998 * 109.47161 * 308.15661 * 20 19 17 41 41 H 1.09010 * 109.46581 * 56.51811 * 21 19 17 42 42 H 1.09000 * 109.47247 * 176.51166 * 21 19 17 43 43 H 1.09000 * 109.47513 * 296.51795 * 21 19 17 44 44 H 1.07991 * 120.78824 * 0.02562 * 23 22 19 45 45 H 1.08002 * 120.41168 * 180.22303 * 24 23 22 46 46 H 1.08002 * 119.61806 * 179.79159 * 25 24 23 47 47 H 1.07998 * 119.61286 * 180.02562 * 27 26 25 48 48 H 1.09001 * 109.67697 * 189.74258 * 28 16 15 49 49 H 1.09000 * 109.71179 * 69.20751 * 28 16 15 50 50 H 1.09006 * 109.51392 * 292.37944 * 29 28 16 51 51 H 1.09005 * 109.55402 * 172.25169 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1545 -0.0061 -2.3744 6 1 1.8976 1.0418 -2.4229 7 6 2.6226 -0.6590 -3.5064 8 7 2.9361 -1.9360 -3.4470 9 14 2.8090 0.2749 -5.1133 10 1 4.1716 0.8599 -5.1908 11 1 2.6041 -0.6551 -6.2529 12 1 1.7993 1.3621 -5.1740 13 6 2.0401 -0.7212 1.2492 14 1 1.6786 -0.2068 2.1397 15 6 3.5729 -0.7272 1.2470 16 7 4.0353 -1.5827 2.3514 17 6 4.9545 -1.1416 3.2328 18 8 5.4605 -0.0492 3.0856 19 6 5.3533 -2.0054 4.4014 20 6 6.0097 -3.2881 3.8869 21 6 6.3445 -1.2439 5.2838 22 6 4.1295 -2.3561 5.2078 23 6 4.2085 -3.2818 6.2373 24 6 3.0580 -3.5699 6.9552 25 6 1.8768 -2.9368 6.6169 26 7 1.8378 -2.0653 5.6282 27 6 2.9131 -1.7638 4.9266 28 6 3.4649 -2.9345 2.4646 29 6 1.9372 -2.8209 2.4075 30 8 1.5640 -2.0692 1.2501 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 0.0005 34 1 2.2491 -1.6317 -1.1526 35 1 3.2636 -2.3922 -4.2380 36 1 3.9371 -1.1229 0.2988 37 1 3.9443 0.2878 1.3887 38 1 6.9691 -3.0469 3.4291 39 1 6.1665 -3.9749 4.7186 40 1 5.3613 -3.7562 3.1463 41 1 5.8991 -0.3005 5.5999 42 1 6.5854 -1.8440 6.1612 43 1 7.2551 -1.0444 4.7188 44 1 5.1447 -3.7638 6.4767 45 1 3.0836 -4.2830 7.7659 46 1 0.9754 -3.1583 7.1691 47 1 2.8424 -1.0446 4.1241 48 1 3.7646 -3.3812 3.4126 49 1 3.8181 -3.5529 1.6394 50 1 1.5760 -2.3144 3.3026 51 1 1.4991 -3.8175 2.3512 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276780136.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:55 Heat of formation + Delta-G solvation = -5.681577 kcal Electronic energy + Delta-G solvation = -33055.681940 eV Core-core repulsion = 28956.588788 eV Total energy + Delta-G solvation = -4099.093152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.76836 -39.73455 -38.57468 -36.00777 -35.40915 -34.49420 -32.51929 -32.16086 -30.64258 -30.16014 -28.37499 -27.89855 -27.49667 -25.05570 -23.94303 -23.82776 -23.46007 -22.74152 -21.04488 -19.70326 -19.06824 -17.83080 -17.35382 -17.05899 -16.65755 -16.17059 -15.93872 -15.37628 -15.05037 -14.93123 -14.74703 -14.42650 -14.13640 -14.06044 -13.86988 -13.50777 -13.31766 -13.26023 -13.06849 -12.72522 -12.65813 -12.53110 -12.40173 -12.11207 -11.87190 -11.73881 -11.59563 -11.48708 -11.30248 -11.10988 -10.81765 -10.74544 -10.45258 -10.27126 -10.09508 -9.99275 -9.82735 -9.77237 -9.57781 -9.51603 -9.16789 -8.88688 -8.34335 -6.89074 -5.70922 -2.99011 0.73709 0.93475 2.51109 2.87198 3.45583 3.47200 3.52676 3.53839 4.00751 4.02887 4.08232 4.34502 4.51725 4.58901 4.63598 4.67081 4.70179 4.81397 4.86344 5.02134 5.14275 5.17229 5.26862 5.33080 5.35303 5.41526 5.45343 5.51341 5.53553 5.59661 5.64604 5.71312 5.76047 5.83032 5.85744 5.87013 5.90937 5.98094 6.04431 6.25392 6.33971 6.36629 6.45402 6.57163 6.71476 6.82710 7.18356 7.35889 7.52323 7.66467 7.75521 8.09645 8.47469 9.59806 10.17059 10.54517 11.51363 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016497 B = 0.003244 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.890145 B = 8628.245417 C = 9408.913486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.012 4.012 8 N -0.930 5.930 9 Si 0.904 3.096 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.078 3.922 14 H 0.054 0.946 15 C 0.083 3.917 16 N -0.608 5.608 17 C 0.522 3.478 18 O -0.531 6.531 19 C -0.037 4.037 20 C -0.153 4.153 21 C -0.122 4.122 22 C -0.129 4.129 23 C -0.066 4.066 24 C -0.171 4.171 25 C 0.096 3.904 26 N -0.476 5.476 27 C 0.104 3.896 28 C 0.058 3.942 29 C 0.036 3.964 30 O -0.355 6.355 31 H 0.033 0.967 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.390 0.610 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.157 0.843 47 H 0.157 0.843 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.066 0.934 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -6.446 24.242 25.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.077 0.923 4 N -0.359 5.359 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.018 3.982 14 H 0.072 0.928 15 C -0.038 4.038 16 N -0.342 5.342 17 C 0.309 3.691 18 O -0.407 6.407 19 C -0.041 4.041 20 C -0.211 4.211 21 C -0.180 4.180 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.191 4.191 25 C -0.061 4.061 26 N -0.184 5.184 27 C -0.053 4.053 28 C -0.065 4.065 29 C -0.042 4.042 30 O -0.273 6.273 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.225 0.775 35 H 0.063 0.937 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.155 0.845 45 H 0.154 0.846 46 H 0.174 0.826 47 H 0.174 0.826 48 H 0.115 0.885 49 H 0.101 0.899 50 H 0.084 0.916 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.357 -5.401 23.646 24.369 hybrid contribution 1.093 -0.352 -0.531 1.266 sum 3.451 -5.753 23.114 24.068 Atomic orbital electron populations 1.22340 0.98456 1.01590 0.99629 1.20253 0.92808 0.94593 0.85134 0.92259 1.42380 1.77647 1.10926 1.04974 1.19247 1.36257 0.93802 0.87570 0.91231 1.24707 1.02278 0.95914 0.97925 1.69678 1.50767 1.08631 1.28805 0.86232 0.77745 0.78609 0.83853 1.21832 1.21906 1.20823 1.22925 0.92041 0.83578 0.99634 0.92783 1.22506 0.95004 0.96429 0.89874 1.48272 1.41196 1.15620 1.29093 1.20294 0.78849 0.86865 0.83065 1.90710 1.53187 1.21671 1.75147 1.19708 0.94107 0.96996 0.93258 1.22215 1.01728 0.94887 1.02220 1.21680 0.98146 0.99899 0.98258 1.20570 0.95500 0.98947 0.98067 1.21383 0.99079 0.95350 0.93393 1.22133 0.93730 1.01870 1.01325 1.22865 0.97807 0.91925 0.93490 1.67801 1.30678 1.14011 1.05906 1.23081 0.87614 0.97442 0.97153 1.22886 0.95724 0.84311 1.03565 1.23158 0.92766 0.97862 0.90464 1.88112 1.75049 1.23525 1.40610 0.94804 0.92787 0.92540 0.77529 0.93662 0.88272 0.88530 0.91011 0.91072 0.90713 0.91665 0.91893 0.91096 0.84537 0.84570 0.82615 0.82568 0.88469 0.89888 0.91587 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.35 37.16 0.35 -2.69 16 2 C 0.18 3.68 2.74 -67.93 -0.19 3.50 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.80 4.28 -53.42 -0.23 -18.03 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 9 Si 0.90 22.57 29.55 -169.99 -5.02 17.54 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.08 1.35 2.53 -26.58 -0.07 1.28 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.08 1.46 5.85 -3.54 -0.02 1.44 16 16 N -0.61 -8.87 1.97 -172.27 -0.34 -9.21 16 17 C 0.52 7.54 5.27 -10.99 -0.06 7.48 16 18 O -0.53 -9.50 15.46 5.56 0.09 -9.41 16 19 C -0.04 -0.38 0.60 -156.82 -0.09 -0.47 16 20 C -0.15 -1.29 8.01 37.16 0.30 -1.00 16 21 C -0.12 -1.18 7.69 37.16 0.29 -0.89 16 22 C -0.13 -1.24 3.03 -104.48 -0.32 -1.56 16 23 C -0.07 -0.48 8.86 -39.27 -0.35 -0.83 16 24 C -0.17 -1.13 10.11 -39.44 -0.40 -1.53 16 25 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 26 N -0.48 -5.40 9.76 -13.25 -0.13 -5.53 16 27 C 0.10 1.21 6.52 -17.55 -0.11 1.10 16 28 C 0.06 0.72 3.92 -3.53 -0.01 0.71 16 29 C 0.04 0.48 6.52 37.31 0.24 0.72 16 30 O -0.36 -6.21 9.22 -35.23 -0.32 -6.54 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 34 H 0.39 10.45 7.20 -40.82 -0.29 10.16 16 35 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.10 2.05 7.26 -51.93 -0.38 1.67 16 37 H 0.10 1.76 7.11 -51.93 -0.37 1.39 16 38 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 39 H 0.07 0.42 6.74 -51.93 -0.35 0.07 16 40 H 0.07 0.67 5.01 -51.93 -0.26 0.41 16 41 H 0.06 0.72 8.05 -51.92 -0.42 0.30 16 42 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.14 0.66 7.12 -52.49 -0.37 0.29 16 45 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 47 H 0.16 2.14 5.12 -52.49 -0.27 1.87 16 48 H 0.10 1.00 3.30 -51.93 -0.17 0.83 16 49 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 50 H 0.07 0.88 4.85 -51.93 -0.25 0.62 16 51 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 386.78 15.07 5.83 5.83 Total: -1.00 -32.87 386.78 -8.00 -40.87 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.71 Total: 11.08 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -0.88 Total: 0.73 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.03 Total: -60.11 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.24 Total: -15.95 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.87 -8.00 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276780136.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.188 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds