Wall clock time and date at job start Wed Apr 1 2020 04:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46920 * 2 1 4 4 N 1.46496 * 109.46789 * 240.00459 * 2 1 3 5 5 C 1.36931 * 120.00429 * 84.99508 * 4 2 1 6 6 H 1.08000 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31626 * 120.00189 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46913 * 60.00266 * 9 7 5 11 11 H 1.48497 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47133 * 300.00572 * 9 7 5 13 13 C 1.52994 * 109.47217 * 119.99799 * 2 1 3 14 14 H 1.08994 * 109.51788 * 300.09856 * 13 2 1 15 15 C 1.53296 * 109.51187 * 179.97438 * 13 2 1 16 16 N 1.47151 * 108.38661 * 187.77437 * 15 13 2 17 17 C 1.34769 * 120.98472 * 230.26152 * 16 15 13 18 18 O 1.21559 * 120.00194 * 356.20336 * 17 16 15 19 19 C 1.47865 * 120.00287 * 176.19770 * 17 16 15 20 20 C 1.39618 * 120.10216 * 49.02483 * 19 17 16 21 21 C 1.37985 * 119.99931 * 179.76816 * 20 19 17 22 22 C 1.38248 * 120.22761 * 0.50579 * 21 20 19 23 23 C 1.38984 * 120.22297 * 359.74572 * 22 21 20 24 24 N 1.39700 * 120.00781 * 180.02562 * 23 22 21 25 25 C 1.46499 * 120.00433 * 179.97438 * 24 23 22 26 26 C 1.46506 * 120.00043 * 359.97438 * 24 23 22 27 27 C 1.38680 * 119.98924 * 359.97438 * 23 22 21 28 28 C 1.47152 * 118.03376 * 50.53787 * 16 15 13 29 29 C 1.53290 * 108.38379 * 309.46535 * 28 16 15 30 30 O 1.42962 * 109.22576 * 52.30546 * 29 28 16 31 31 H 1.08996 * 109.47576 * 59.99671 * 1 2 3 32 32 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46677 * 299.99800 * 1 2 3 34 34 H 0.97003 * 119.99285 * 264.99644 * 4 2 1 35 35 H 0.96993 * 120.00148 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.68126 * 68.05301 * 15 13 2 37 37 H 1.08998 * 109.71316 * 307.52126 * 15 13 2 38 38 H 1.07992 * 119.99983 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.88907 * 180.24983 * 21 20 19 40 40 H 1.08001 * 119.88961 * 179.72037 * 22 21 20 41 41 H 1.08998 * 109.47125 * 89.99861 * 25 24 23 42 42 H 1.08997 * 109.47834 * 209.99910 * 25 24 23 43 43 H 1.09002 * 109.46982 * 330.00166 * 25 24 23 44 44 H 1.09000 * 109.46954 * 89.99997 * 26 24 23 45 45 H 1.08995 * 109.47142 * 209.99905 * 26 24 23 46 46 H 1.09003 * 109.46810 * 329.99999 * 26 24 23 47 47 H 1.07996 * 120.11598 * 180.02562 * 27 23 22 48 48 H 1.09005 * 109.68153 * 69.19007 * 28 16 15 49 49 H 1.08997 * 109.67945 * 189.73750 * 28 16 15 50 50 H 1.08997 * 109.51632 * 292.37580 * 29 28 16 51 51 H 1.09003 * 109.55411 * 172.25127 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1489 -0.0074 -2.3758 6 1 1.8924 1.0406 -2.4241 7 6 2.6121 -0.6616 -3.5091 8 7 2.9252 -1.9387 -3.4500 9 14 2.7910 0.2704 -5.1181 10 1 3.7462 1.3928 -4.9363 11 1 3.2998 -0.6480 -6.1682 12 1 1.4688 0.8073 -5.5288 13 6 2.0400 -0.7212 1.2492 14 1 1.6757 -0.2090 2.1396 15 6 3.5730 -0.7223 1.2498 16 7 4.0361 -1.5778 2.3539 17 6 4.9558 -1.1366 3.2346 18 8 5.4663 -0.0437 3.0842 19 6 5.3439 -1.9818 4.3842 20 6 5.6849 -3.3210 4.1851 21 6 6.0514 -4.1065 5.2587 22 6 6.0724 -3.5752 6.5348 23 6 5.7296 -2.2447 6.7444 24 7 5.7529 -1.7123 8.0358 25 6 5.3921 -0.3097 8.2565 26 6 6.1381 -2.5566 9.1694 27 6 5.3655 -1.4454 5.6712 28 6 3.4699 -2.9315 2.4642 29 6 1.9420 -2.8228 2.4044 30 8 1.5684 -2.0708 1.2474 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 2.2489 -1.6317 -1.1526 35 1 3.2484 -2.3959 -4.2420 36 1 3.9407 0.2937 1.3935 37 1 3.9407 -1.1150 0.3019 38 1 5.6659 -3.7409 3.1903 39 1 6.3187 -5.1411 5.1021 40 1 6.3557 -4.1962 7.3718 41 1 4.3206 -0.2349 8.4415 42 1 5.9373 0.0745 9.1186 43 1 5.6500 0.2751 7.3735 44 1 7.2157 -2.4929 9.3202 45 1 5.6246 -2.2148 10.0680 46 1 5.8605 -3.5904 8.9633 47 1 5.0992 -0.4111 5.8317 48 1 3.8267 -3.5471 1.6385 49 1 3.7694 -3.3785 3.4121 50 1 1.5775 -2.3188 3.2995 51 1 1.5073 -3.8207 2.3460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276812871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:29 Heat of formation + Delta-G solvation = -10.491754 kcal Electronic energy + Delta-G solvation = -31271.643632 eV Core-core repulsion = 27172.341895 eV Total energy + Delta-G solvation = -4099.301737 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.66222 -39.45634 -38.17083 -36.38498 -35.41903 -34.42841 -32.29293 -31.58112 -30.61358 -29.91050 -28.69620 -28.34904 -27.48292 -25.18623 -24.38216 -23.45933 -23.43036 -21.96583 -21.26782 -19.66418 -19.35335 -17.83369 -17.23707 -16.80444 -16.35018 -16.05030 -15.80644 -15.51772 -15.43516 -15.25963 -14.70095 -14.57834 -14.26869 -14.22604 -13.82056 -13.70299 -13.34032 -13.12489 -13.02233 -12.95628 -12.66610 -12.63241 -12.44140 -12.31500 -11.89829 -11.86063 -11.62572 -11.35143 -11.29072 -11.12244 -10.78632 -10.74245 -10.43275 -10.28256 -10.13757 -10.03307 -9.83931 -9.59980 -9.52576 -9.12471 -8.87317 -8.30744 -7.59612 -6.88062 -5.69418 -2.97698 0.89848 1.31669 2.65006 2.83561 3.02969 3.48907 3.53362 3.54001 3.64258 4.05272 4.35438 4.58231 4.63526 4.64791 4.80649 4.87480 4.91233 4.97364 5.03060 5.16435 5.19326 5.20197 5.25451 5.31598 5.36395 5.39390 5.41429 5.46793 5.54470 5.64574 5.67275 5.76881 5.87122 5.89037 5.94289 6.05431 6.20386 6.25905 6.28404 6.40131 6.44628 6.50114 6.63212 6.71166 6.82318 6.87590 7.13375 7.17585 7.45560 7.53386 7.76032 8.19818 8.48950 9.61080 10.18349 10.55780 11.52792 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002373 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.499658 B =11795.619326 C =11971.548197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.069 0.931 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.287 1.287 13 C 0.079 3.921 14 H 0.054 0.946 15 C 0.086 3.914 16 N -0.603 5.603 17 C 0.557 3.443 18 O -0.536 6.536 19 C -0.071 4.071 20 C -0.150 4.150 21 C -0.075 4.075 22 C -0.183 4.183 23 C 0.209 3.791 24 N -0.639 5.639 25 C 0.091 3.909 26 C 0.094 3.906 27 C -0.148 4.148 28 C 0.061 3.939 29 C 0.048 3.952 30 O -0.359 6.359 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.390 0.610 35 H 0.254 0.746 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.125 0.875 41 H 0.049 0.951 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.129 0.871 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.048 0.952 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.851 -5.013 27.245 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.077 0.923 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.087 0.913 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.214 1.214 13 C 0.020 3.980 14 H 0.072 0.928 15 C -0.036 4.036 16 N -0.336 5.336 17 C 0.345 3.655 18 O -0.414 6.414 19 C -0.075 4.075 20 C -0.171 4.171 21 C -0.093 4.093 22 C -0.205 4.205 23 C 0.108 3.892 24 N -0.351 5.351 25 C -0.052 4.052 26 C -0.049 4.049 27 C -0.171 4.171 28 C -0.062 4.062 29 C -0.030 4.030 30 O -0.277 6.277 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.225 0.775 35 H 0.064 0.936 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.067 0.933 42 H 0.085 0.915 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.147 0.853 48 H 0.101 0.899 49 H 0.118 0.882 50 H 0.066 0.934 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.035 -4.299 27.041 27.677 hybrid contribution 0.324 0.175 -0.657 0.753 sum 4.359 -4.124 26.385 27.058 Atomic orbital electron populations 1.22350 0.98544 1.01550 0.99582 1.20256 0.92736 0.94639 0.85211 0.92267 1.42370 1.77662 1.11014 1.04860 1.19195 1.36534 0.93780 0.87448 0.91290 1.24716 1.02268 0.95934 0.97926 1.69663 1.50791 1.08588 1.28836 0.86303 0.77709 0.78614 0.83759 1.21330 1.21811 1.21384 1.22907 0.92170 0.83439 0.99518 0.92817 1.22471 0.94927 0.96463 0.89733 1.48128 1.40982 1.15662 1.28802 1.18405 0.79183 0.85942 0.81936 1.90788 1.53527 1.21743 1.75303 1.19638 1.00796 0.94050 0.93030 1.21145 1.03548 0.92588 0.99770 1.20831 0.97242 0.99614 0.91662 1.20803 1.07963 0.93815 0.97931 1.17660 0.94715 0.92339 0.84490 1.46295 1.74351 1.10728 1.03769 1.21671 0.99906 0.81371 1.02287 1.21627 0.99646 0.95324 0.88276 1.20606 1.06322 0.99915 0.90297 1.22811 0.95352 0.84013 1.03993 1.22893 0.93133 0.97500 0.89461 1.88104 1.75312 1.23493 1.40748 0.92766 0.92546 0.94910 0.77498 0.93579 0.88632 0.88311 0.85326 0.85404 0.85749 0.93252 0.91463 0.91029 0.93382 0.91535 0.91261 0.85330 0.89925 0.88162 0.93385 0.87957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 9.35 37.16 0.35 -2.66 16 2 C 0.18 3.68 2.73 -67.94 -0.19 3.49 16 3 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 4 N -0.72 -17.88 4.29 -53.43 -0.23 -18.11 16 5 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 9 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 13 C 0.08 1.38 2.53 -26.58 -0.07 1.31 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 15 C 0.09 1.56 5.85 -3.53 -0.02 1.54 16 16 N -0.60 -9.45 3.02 -173.38 -0.52 -9.97 16 17 C 0.56 9.09 7.26 -12.32 -0.09 9.00 16 18 O -0.54 -10.63 16.52 5.31 0.09 -10.54 16 19 C -0.07 -0.94 5.05 -104.99 -0.53 -1.47 16 20 C -0.15 -1.64 7.37 -39.16 -0.29 -1.93 16 21 C -0.07 -0.67 10.02 -39.67 -0.40 -1.06 16 22 C -0.18 -1.61 9.20 -39.30 -0.36 -1.98 16 23 C 0.21 2.12 6.55 -83.83 -0.55 1.57 16 24 N -0.64 -5.22 3.41 -187.59 -0.64 -5.86 16 25 C 0.09 0.62 10.19 59.85 0.61 1.23 16 26 C 0.09 0.50 10.19 59.85 0.61 1.11 16 27 C -0.15 -1.79 8.88 -38.97 -0.35 -2.13 16 28 C 0.06 0.78 5.42 -3.54 -0.02 0.76 16 29 C 0.05 0.62 6.98 37.31 0.26 0.88 16 30 O -0.36 -6.22 9.22 -35.23 -0.32 -6.55 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.06 1.11 7.69 -51.93 -0.40 0.71 16 33 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.39 10.50 7.20 -40.82 -0.29 10.21 16 35 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.81 7.11 -51.93 -0.37 1.44 16 37 H 0.10 2.09 7.27 -51.93 -0.38 1.72 16 38 H 0.13 1.33 6.93 -52.49 -0.36 0.96 16 39 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 40 H 0.12 0.82 6.12 -52.49 -0.32 0.50 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.07 0.33 8.07 -51.93 -0.42 -0.08 16 43 H 0.07 0.55 6.19 -51.93 -0.32 0.23 16 44 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 46 H 0.07 0.32 6.19 -51.93 -0.32 0.00 16 47 H 0.13 1.55 6.14 -52.49 -0.32 1.23 16 48 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.10 1.04 4.70 -51.93 -0.24 0.80 16 50 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -33.92 402.50 -9.08 -43.00 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -7.94 Total: 9.33 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -1.27 Total: 2.47 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.67 Total: -61.40 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.24 Total: -17.08 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.92 -9.08 -43.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276812871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.505 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds