Wall clock time and date at job start Wed Apr 1 2020 04:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46920 * 2 1 4 4 N 1.46496 * 109.46789 * 240.00459 * 2 1 3 5 5 C 1.36931 * 120.00429 * 84.99508 * 4 2 1 6 6 H 1.08000 * 119.99900 * 0.02562 * 5 4 2 7 7 C 1.38812 * 120.00198 * 179.97438 * 5 4 2 8 8 N 1.31626 * 120.00189 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00257 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46913 * 60.00266 * 9 7 5 11 11 H 1.48497 * 109.47219 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47133 * 300.00572 * 9 7 5 13 13 C 1.52994 * 109.47217 * 119.99799 * 2 1 3 14 14 H 1.08994 * 109.51788 * 300.09856 * 13 2 1 15 15 C 1.53296 * 109.51187 * 179.97438 * 13 2 1 16 16 N 1.47151 * 108.38661 * 187.77437 * 15 13 2 17 17 C 1.34769 * 120.98472 * 230.26152 * 16 15 13 18 18 O 1.21559 * 120.00194 * 356.20336 * 17 16 15 19 19 C 1.47865 * 120.00287 * 176.19770 * 17 16 15 20 20 C 1.39618 * 120.10216 * 49.02483 * 19 17 16 21 21 C 1.37985 * 119.99931 * 179.76816 * 20 19 17 22 22 C 1.38248 * 120.22761 * 0.50579 * 21 20 19 23 23 C 1.38984 * 120.22297 * 359.74572 * 22 21 20 24 24 N 1.39700 * 120.00781 * 180.02562 * 23 22 21 25 25 C 1.46499 * 120.00433 * 179.97438 * 24 23 22 26 26 C 1.46506 * 120.00043 * 359.97438 * 24 23 22 27 27 C 1.38680 * 119.98924 * 359.97438 * 23 22 21 28 28 C 1.47152 * 118.03376 * 50.53787 * 16 15 13 29 29 C 1.53290 * 108.38379 * 309.46535 * 28 16 15 30 30 O 1.42962 * 109.22576 * 52.30546 * 29 28 16 31 31 H 1.08996 * 109.47576 * 59.99671 * 1 2 3 32 32 H 1.08999 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46677 * 299.99800 * 1 2 3 34 34 H 0.97003 * 119.99285 * 264.99644 * 4 2 1 35 35 H 0.96993 * 120.00148 * 179.97438 * 8 7 5 36 36 H 1.09002 * 109.68126 * 68.05301 * 15 13 2 37 37 H 1.08998 * 109.71316 * 307.52126 * 15 13 2 38 38 H 1.07992 * 119.99983 * 0.02562 * 20 19 17 39 39 H 1.07997 * 119.88907 * 180.24983 * 21 20 19 40 40 H 1.08001 * 119.88961 * 179.72037 * 22 21 20 41 41 H 1.08998 * 109.47125 * 89.99861 * 25 24 23 42 42 H 1.08997 * 109.47834 * 209.99910 * 25 24 23 43 43 H 1.09002 * 109.46982 * 330.00166 * 25 24 23 44 44 H 1.09000 * 109.46954 * 89.99997 * 26 24 23 45 45 H 1.08995 * 109.47142 * 209.99905 * 26 24 23 46 46 H 1.09003 * 109.46810 * 329.99999 * 26 24 23 47 47 H 1.07996 * 120.11598 * 180.02562 * 27 23 22 48 48 H 1.09005 * 109.68153 * 69.19007 * 28 16 15 49 49 H 1.08997 * 109.67945 * 189.73750 * 28 16 15 50 50 H 1.08997 * 109.51632 * 292.37580 * 29 28 16 51 51 H 1.09003 * 109.55411 * 172.25127 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1489 -0.0074 -2.3758 6 1 1.8924 1.0406 -2.4241 7 6 2.6121 -0.6616 -3.5091 8 7 2.9252 -1.9387 -3.4500 9 14 2.7910 0.2704 -5.1181 10 1 3.7462 1.3928 -4.9363 11 1 3.2998 -0.6480 -6.1682 12 1 1.4688 0.8073 -5.5288 13 6 2.0400 -0.7212 1.2492 14 1 1.6757 -0.2090 2.1396 15 6 3.5730 -0.7223 1.2498 16 7 4.0361 -1.5778 2.3539 17 6 4.9558 -1.1366 3.2346 18 8 5.4663 -0.0437 3.0842 19 6 5.3439 -1.9818 4.3842 20 6 5.6849 -3.3210 4.1851 21 6 6.0514 -4.1065 5.2587 22 6 6.0724 -3.5752 6.5348 23 6 5.7296 -2.2447 6.7444 24 7 5.7529 -1.7123 8.0358 25 6 5.3921 -0.3097 8.2565 26 6 6.1381 -2.5566 9.1694 27 6 5.3655 -1.4454 5.6712 28 6 3.4699 -2.9315 2.4642 29 6 1.9420 -2.8228 2.4044 30 8 1.5684 -2.0708 1.2474 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 2.2489 -1.6317 -1.1526 35 1 3.2484 -2.3959 -4.2420 36 1 3.9407 0.2937 1.3935 37 1 3.9407 -1.1150 0.3019 38 1 5.6659 -3.7409 3.1903 39 1 6.3187 -5.1411 5.1021 40 1 6.3557 -4.1962 7.3718 41 1 4.3206 -0.2349 8.4415 42 1 5.9373 0.0745 9.1186 43 1 5.6500 0.2751 7.3735 44 1 7.2157 -2.4929 9.3202 45 1 5.6246 -2.2148 10.0680 46 1 5.8605 -3.5904 8.9633 47 1 5.0992 -0.4111 5.8317 48 1 3.8267 -3.5471 1.6385 49 1 3.7694 -3.3785 3.4121 50 1 1.5775 -2.3188 3.2995 51 1 1.5073 -3.8207 2.3460 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276812871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:28 Heat of formation + Delta-G solvation = -32.429452 kcal Electronic energy + Delta-G solvation = -31272.594921 eV Core-core repulsion = 27172.341895 eV Total energy + Delta-G solvation = -4100.253027 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.79418 -40.42442 -39.42484 -37.23690 -36.95957 -35.77797 -34.17568 -32.50621 -31.74396 -30.98870 -30.10970 -29.35497 -28.63465 -26.02448 -25.79638 -25.13187 -24.52015 -23.03374 -22.13485 -21.20497 -20.44371 -19.34847 -18.69548 -17.92099 -17.52823 -17.10234 -16.92543 -16.61141 -16.36995 -16.19818 -15.98882 -15.94068 -15.69798 -15.22976 -15.10235 -14.79747 -14.65863 -14.59784 -14.15931 -14.02052 -13.62162 -13.46843 -13.43657 -13.23635 -13.06959 -12.99223 -12.88629 -12.72757 -12.57329 -12.49445 -12.42818 -12.22095 -12.08928 -11.80880 -11.68391 -11.54295 -11.14820 -11.00399 -10.92545 -10.69381 -9.97313 -9.63376 -8.94202 -8.26197 -7.88544 -5.15807 0.02225 0.54806 1.47998 1.50780 1.53333 1.56316 1.77858 2.22617 2.58644 2.77747 2.83370 3.33633 3.44701 3.68648 3.90721 3.92958 3.96390 3.97937 4.07242 4.17670 4.20486 4.26518 4.30327 4.36352 4.38779 4.48823 4.50492 4.55072 4.61676 4.68228 4.77271 4.79493 4.81122 4.84378 4.85236 4.91966 4.97009 4.99640 5.09188 5.19172 5.20896 5.27799 5.40557 5.52335 5.54473 5.60933 5.77502 6.22253 6.25668 6.28986 6.33738 6.47076 6.93083 7.40028 8.15865 8.41748 9.34486 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002373 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.499658 B =11795.619326 C =11971.548197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.173 3.827 3 H 0.058 0.942 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.279 1.279 13 C 0.094 3.906 14 H 0.076 0.924 15 C 0.094 3.906 16 N -0.602 5.602 17 C 0.554 3.446 18 O -0.584 6.584 19 C -0.090 4.090 20 C -0.158 4.158 21 C -0.065 4.065 22 C -0.176 4.176 23 C 0.206 3.794 24 N -0.643 5.643 25 C 0.087 3.913 26 C 0.088 3.912 27 C -0.166 4.166 28 C 0.062 3.938 29 C 0.044 3.956 30 O -0.381 6.381 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.378 0.622 35 H 0.249 0.751 36 H 0.080 0.920 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.082 0.918 46 H 0.080 0.920 47 H 0.117 0.883 48 H 0.077 0.923 49 H 0.129 0.871 50 H 0.063 0.937 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.572 -6.305 30.141 31.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.064 3.936 3 H 0.076 0.924 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.093 0.907 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.798 3.202 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.205 1.205 13 C 0.035 3.965 14 H 0.093 0.907 15 C -0.029 4.029 16 N -0.333 5.333 17 C 0.344 3.656 18 O -0.465 6.465 19 C -0.093 4.093 20 C -0.179 4.179 21 C -0.083 4.083 22 C -0.198 4.198 23 C 0.103 3.897 24 N -0.354 5.354 25 C -0.056 4.056 26 C -0.054 4.054 27 C -0.190 4.190 28 C -0.059 4.059 29 C -0.033 4.033 30 O -0.300 6.300 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.211 0.789 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.149 0.851 39 H 0.178 0.822 40 H 0.171 0.829 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.135 0.865 48 H 0.096 0.904 49 H 0.147 0.853 50 H 0.082 0.918 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.721 -5.580 30.003 30.743 hybrid contribution 0.436 0.565 -1.357 1.533 sum 4.158 -5.015 28.646 29.377 Atomic orbital electron populations 1.22166 0.96842 1.01185 1.00556 1.20497 0.93784 0.94559 0.84758 0.92374 1.42471 1.78011 1.10494 1.05667 1.19582 1.34702 0.94101 0.88398 0.90740 1.25483 1.03251 0.96857 1.01191 1.69823 1.52652 1.10077 1.29204 0.85288 0.77842 0.77281 0.79808 1.20785 1.22376 1.20481 1.22604 0.91101 0.84113 0.98675 0.90658 1.22114 0.95730 0.95886 0.89131 1.48184 1.40863 1.16482 1.27817 1.19034 0.78315 0.85709 0.82503 1.90744 1.55186 1.24007 1.76523 1.19432 1.03227 0.94695 0.91968 1.21225 1.04120 0.91743 1.00768 1.21175 0.95529 1.00735 0.90872 1.21178 1.06376 0.93350 0.98896 1.17805 0.94206 0.92808 0.84856 1.46569 1.73675 1.11407 1.03762 1.21747 1.00521 0.80946 1.02384 1.21840 1.00255 0.95495 0.87773 1.20572 1.07796 0.99852 0.90732 1.23001 0.95297 0.82328 1.05295 1.23204 0.93144 0.98457 0.88511 1.88064 1.75504 1.23316 1.43123 0.94205 0.93506 0.91441 0.78944 0.94265 0.90195 0.92017 0.85117 0.82189 0.82857 0.92813 0.89424 0.92616 0.92776 0.89926 0.90180 0.86544 0.90446 0.85345 0.91831 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 9.35 71.98 0.67 -4.75 16 2 C 0.17 7.05 2.73 44.99 0.12 7.18 16 3 H 0.06 2.37 8.08 -2.38 -0.02 2.35 16 4 N -0.73 -37.22 4.29 -322.95 -1.38 -38.60 16 5 C -0.24 -13.30 9.93 84.03 0.83 -12.47 16 6 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 8 N -0.97 -60.31 13.06 21.65 0.28 -60.03 16 9 Si 0.97 47.45 29.55 68.60 2.03 49.48 16 10 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 11 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 C 0.09 3.31 2.53 30.69 0.08 3.39 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.32 16 15 C 0.09 3.60 5.85 86.35 0.50 4.11 16 16 N -0.60 -19.36 3.02 -820.74 -2.48 -21.84 16 17 C 0.55 18.79 7.26 86.79 0.63 19.43 16 18 O -0.58 -24.59 16.52 -3.90 -0.06 -24.66 16 19 C -0.09 -2.35 5.05 -20.10 -0.10 -2.46 16 20 C -0.16 -3.20 7.37 22.54 0.17 -3.04 16 21 C -0.06 -0.94 10.02 22.21 0.22 -0.71 16 22 C -0.18 -2.50 9.20 22.45 0.21 -2.29 16 23 C 0.21 3.79 6.55 38.17 0.25 4.04 16 24 N -0.64 -9.07 3.41 -747.41 -2.55 -11.62 16 25 C 0.09 1.08 10.19 127.77 1.30 2.38 16 26 C 0.09 0.64 10.19 127.77 1.30 1.94 16 27 C -0.17 -3.98 8.88 22.67 0.20 -3.78 16 28 C 0.06 1.53 5.42 86.35 0.47 2.00 16 29 C 0.04 1.06 6.98 72.08 0.50 1.56 16 30 O -0.38 -13.03 9.22 -148.98 -1.37 -14.41 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.05 1.80 7.69 -2.39 -0.02 1.78 16 33 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.38 21.12 7.20 -92.71 -0.67 20.46 16 35 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 36 H 0.08 3.24 7.11 -2.39 -0.02 3.23 16 37 H 0.06 2.80 7.27 -2.39 -0.02 2.79 16 38 H 0.13 2.54 6.93 -2.91 -0.02 2.52 16 39 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.15 1.28 6.12 -2.91 -0.02 1.26 16 41 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.70 8.07 -2.39 -0.02 0.68 16 43 H 0.06 0.87 6.19 -2.39 -0.01 0.86 16 44 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.08 0.35 8.07 -2.39 -0.02 0.34 16 46 H 0.08 0.41 6.19 -2.39 -0.01 0.40 16 47 H 0.12 2.97 6.14 -2.91 -0.02 2.95 16 48 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 49 H 0.13 2.45 4.70 -2.39 -0.01 2.44 16 50 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -76.68 402.50 2.56 -74.11 By element: Atomic # 1 Polarization: 34.74 SS G_CDS: 0.27 Total: 35.02 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 7.83 Total: 12.55 kcal Atomic # 7 Polarization: -125.96 SS G_CDS: -6.13 Total: -132.09 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.44 Total: -39.07 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -76.68 2.56 -74.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276812871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.684 kcal (2) G-P(sol) polarization free energy of solvation -76.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds