Wall clock time and date at job start Wed Apr 1 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46827 * 2 1 4 4 C 1.53006 * 109.47115 * 119.99613 * 2 1 3 5 5 N 1.46499 * 109.47075 * 175.00205 * 4 2 1 6 6 C 1.46499 * 120.00225 * 89.99694 * 5 4 2 7 7 C 1.34780 * 119.99546 * 270.00256 * 5 4 2 8 8 O 1.21279 * 120.00031 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.99563 * 180.02562 * 7 5 4 10 10 C 1.53001 * 109.47045 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47410 * 179.97438 * 10 9 7 12 12 C 1.38233 * 119.99984 * 269.72877 * 11 10 9 13 13 C 1.38236 * 119.99967 * 179.76551 * 12 11 10 14 14 C 1.38231 * 119.99949 * 0.50447 * 13 12 11 15 15 C 1.38241 * 120.00256 * 359.74691 * 14 13 12 16 16 C 1.38231 * 120.00069 * 89.99876 * 11 10 9 17 17 N 1.46900 * 109.47084 * 239.99487 * 2 1 3 18 18 C 1.46903 * 110.99650 * 85.00304 * 17 2 1 19 19 C 1.50700 * 109.46675 * 180.02562 * 18 17 2 20 20 O 1.21289 * 120.00564 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99718 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99872 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99815 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99766 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00135 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46882 * 90.00336 * 26 24 22 28 28 H 1.48502 * 109.47254 * 210.00039 * 26 24 22 29 29 H 1.48496 * 109.47311 * 330.00658 * 26 24 22 30 30 H 1.09001 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47343 * 300.00695 * 1 2 3 32 32 H 1.09000 * 109.47212 * 60.00016 * 1 2 3 33 33 H 1.08993 * 109.46802 * 54.99894 * 4 2 1 34 34 H 1.09000 * 109.46667 * 295.00003 * 4 2 1 35 35 H 1.09002 * 109.47391 * 270.00005 * 6 5 4 36 36 H 1.09001 * 109.46813 * 150.00061 * 6 5 4 37 37 H 1.09004 * 109.47041 * 30.00189 * 6 5 4 38 38 H 1.09004 * 109.47017 * 299.99442 * 9 7 5 39 39 H 1.09002 * 109.47507 * 59.99434 * 9 7 5 40 40 H 1.09004 * 109.47016 * 299.99759 * 10 9 7 41 41 H 1.09002 * 109.47172 * 59.99545 * 10 9 7 42 42 H 1.07998 * 120.00222 * 359.97438 * 12 11 10 43 43 H 1.08000 * 120.00329 * 180.22897 * 13 12 11 44 44 H 1.07997 * 120.00253 * 179.72617 * 14 13 12 45 45 H 1.07994 * 119.99986 * 179.97438 * 15 14 13 46 46 H 1.08008 * 120.00288 * 359.97438 * 16 11 10 47 47 H 1.00896 * 111.00247 * 321.04713 * 17 2 1 48 48 H 1.09008 * 109.46825 * 299.99683 * 18 17 2 49 49 H 1.08997 * 109.47647 * 60.00095 * 18 17 2 50 50 H 0.96998 * 120.00332 * 359.97438 * 21 19 18 51 51 H 0.97005 * 119.99943 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3343 0.2342 1.7612 7 6 4.0757 -1.8986 0.6117 8 8 3.3850 -2.7767 0.1397 9 6 5.5776 -2.0070 0.5518 10 6 5.9673 -3.3093 -0.1503 11 6 7.4692 -3.4175 -0.2108 12 6 8.1561 -2.9042 -1.2951 13 6 9.5341 -2.9992 -1.3482 14 6 10.2245 -3.6165 -0.3220 15 6 9.5372 -4.1344 0.7599 16 6 8.1596 -4.0348 0.8154 17 7 2.0196 -0.6926 -1.1994 18 6 2.0825 0.2225 -2.3469 19 6 2.5873 -0.5221 -3.5559 20 8 2.8677 -1.6990 -3.4701 21 7 2.7273 0.1199 -4.7327 22 6 3.1871 -0.5573 -5.8326 23 1 3.4367 -1.6052 -5.7561 24 6 3.3309 0.1045 -7.0458 25 7 3.0266 1.3795 -7.1390 26 14 3.9580 -0.8180 -8.5442 27 1 2.8094 -1.4022 -9.2824 28 1 4.6915 0.1198 -9.4318 29 1 4.8715 -1.9052 -8.1097 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1581 2.1370 35 1 4.5400 0.9849 0.9982 36 1 5.2734 -0.1924 2.1137 37 1 3.8102 0.6991 2.5964 38 1 5.9812 -1.1599 -0.0029 39 1 5.9827 -2.0049 1.5638 40 1 5.5638 -4.1562 0.4047 41 1 5.5622 -3.3118 -1.1623 42 1 7.6164 -2.4261 -2.0991 43 1 10.0711 -2.5949 -2.1936 44 1 11.3007 -3.6946 -0.3656 45 1 10.0766 -4.6171 1.5614 46 1 7.6226 -4.4393 1.6608 47 1 1.4495 -1.4980 -1.4099 48 1 1.0870 0.6162 -2.5525 49 1 2.7588 1.0461 -2.1183 50 1 2.5027 1.0611 -4.8015 51 1 3.1274 1.8415 -7.9860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277996110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:16 Heat of formation + Delta-G solvation = -50.357687 kcal Electronic energy + Delta-G solvation = -30775.940773 eV Core-core repulsion = 26674.910320 eV Total energy + Delta-G solvation = -4101.030453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.83801 -39.10599 -38.20990 -36.65353 -34.78536 -33.91228 -33.76587 -31.26759 -30.88116 -30.81105 -29.63722 -27.37320 -26.19253 -26.05443 -24.12783 -23.67944 -22.55898 -21.10432 -20.60013 -19.25712 -18.80089 -17.81801 -17.11692 -16.44729 -16.24104 -15.92857 -15.55752 -15.18904 -14.98684 -14.94509 -14.56025 -14.42042 -13.83619 -13.72520 -13.66954 -13.36679 -13.16962 -13.05911 -12.96958 -12.63692 -12.60313 -12.36646 -12.22154 -12.08682 -12.02172 -11.69033 -11.52869 -11.45716 -11.27037 -11.19441 -10.99498 -10.95182 -10.85922 -10.70491 -10.35379 -10.16074 -9.44015 -9.38663 -8.92596 -8.67257 -8.52842 -8.24407 -7.89982 -7.78661 -6.35955 -3.76116 1.34471 1.39706 3.05909 3.21489 3.27357 3.29471 3.36051 3.79087 4.00345 4.16966 4.41649 4.65508 4.85906 4.94259 4.95644 4.99898 5.06266 5.13374 5.18086 5.19671 5.22935 5.29426 5.31393 5.37261 5.40298 5.48400 5.54279 5.56825 5.60557 5.69872 5.73622 5.79961 5.85414 5.94148 5.97964 6.00694 6.12358 6.13957 6.16104 6.36348 6.38727 6.45352 6.51857 6.71284 6.72707 7.01792 7.40912 7.60780 7.65757 7.88090 8.13709 8.63762 8.69352 9.25103 9.62159 10.15060 10.82157 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006436 B = 0.003635 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4349.431941 B = 7701.636908 C =11365.623909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.074 0.926 4 C 0.131 3.869 5 N -0.613 5.613 6 C 0.082 3.918 7 C 0.525 3.475 8 O -0.512 6.512 9 C -0.127 4.127 10 C -0.068 4.068 11 C -0.076 4.076 12 C -0.112 4.112 13 C -0.118 4.118 14 C -0.130 4.130 15 C -0.123 4.123 16 C -0.120 4.120 17 N -0.648 5.648 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.573 6.573 21 N -0.569 5.569 22 C -0.295 4.295 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.905 5.905 26 Si 0.928 3.072 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.353 0.647 48 H 0.038 0.962 49 H 0.079 0.921 50 H 0.391 0.609 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.060 -0.744 20.929 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.047 4.047 3 H 0.092 0.908 4 C 0.007 3.993 5 N -0.347 5.347 6 C -0.062 4.062 7 C 0.313 3.687 8 O -0.385 6.385 9 C -0.167 4.167 10 C -0.105 4.105 11 C -0.076 4.076 12 C -0.130 4.130 13 C -0.136 4.136 14 C -0.148 4.148 15 C -0.141 4.141 16 C -0.138 4.138 17 N -0.281 5.281 18 C -0.081 4.081 19 C 0.227 3.773 20 O -0.456 6.456 21 N -0.206 5.206 22 C -0.425 4.425 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.547 5.547 26 Si 0.755 3.245 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.145 0.855 43 H 0.139 0.861 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.174 0.826 48 H 0.056 0.944 49 H 0.097 0.903 50 H 0.223 0.777 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.569 -1.845 20.720 21.814 hybrid contribution -0.722 0.706 -1.166 1.542 sum 5.847 -1.140 19.554 20.441 Atomic orbital electron populations 1.22479 0.97239 1.02378 1.02067 1.22013 0.92313 0.98078 0.92297 0.90809 1.21423 0.80250 1.01637 0.95982 1.47517 1.06053 1.21424 1.59704 1.21722 0.95349 0.91017 0.98131 1.20296 0.90085 0.81315 0.76996 1.90697 1.64664 1.39474 1.43695 1.21592 0.93153 1.00039 1.01907 1.20368 0.89990 0.96821 1.03347 1.20004 0.95911 0.97368 0.94280 1.21248 0.94293 0.99314 0.98170 1.21187 0.94449 0.99309 0.98682 1.21113 0.99656 0.99363 0.94660 1.21097 0.94383 1.00299 0.98353 1.21059 0.94190 1.00005 0.98561 1.60099 1.57784 1.08397 1.01810 1.21684 0.99386 0.95705 0.91344 1.19865 0.84932 0.88316 0.84138 1.90564 1.54488 1.16044 1.84470 1.41873 1.58381 1.12390 1.07973 1.19690 1.39638 0.96379 0.86779 0.88028 1.25226 0.97881 0.95760 0.99156 1.69616 1.49200 1.08860 1.26998 0.85889 0.78893 0.78975 0.80734 1.20486 1.20981 1.19424 0.92177 0.92342 0.92377 0.90101 0.90982 0.92900 0.91358 0.91663 0.89145 0.89865 0.90551 0.89246 0.85543 0.86126 0.86465 0.86423 0.86277 0.82627 0.94372 0.90287 0.77650 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.16 37.16 0.34 -1.62 16 2 C 0.07 0.81 2.89 -67.71 -0.20 0.61 16 3 H 0.07 0.88 7.80 -51.93 -0.41 0.47 16 4 C 0.13 1.48 5.24 -4.04 -0.02 1.46 16 5 N -0.61 -7.32 2.78 -181.57 -0.50 -7.82 16 6 C 0.08 0.68 10.29 59.85 0.62 1.29 16 7 C 0.53 7.80 7.01 -10.98 -0.08 7.73 16 8 O -0.51 -9.70 14.71 5.56 0.08 -9.61 16 9 C -0.13 -1.56 4.23 -27.88 -0.12 -1.68 16 10 C -0.07 -0.93 4.63 -27.88 -0.13 -1.06 16 11 C -0.08 -0.95 5.13 -104.63 -0.54 -1.49 16 12 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 13 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 14 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 15 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 16 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 17 N -0.65 -11.05 4.15 -107.99 -0.45 -11.50 16 18 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 19 C 0.44 10.79 7.82 -10.98 -0.09 10.71 16 20 O -0.57 -16.16 15.78 5.55 0.09 -16.08 16 21 N -0.57 -14.79 5.29 -10.96 -0.06 -14.85 16 22 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.08 13.05 55.50 0.72 -24.35 16 26 Si 0.93 21.54 29.55 -169.99 -5.02 16.52 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 33 H 0.08 1.05 7.42 -51.93 -0.39 0.66 16 34 H 0.07 0.59 7.89 -51.93 -0.41 0.18 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.48 6.44 -51.93 -0.33 0.14 16 37 H 0.06 0.40 7.89 -51.93 -0.41 -0.01 16 38 H 0.09 1.13 8.11 -51.93 -0.42 0.70 16 39 H 0.08 0.81 7.40 -51.93 -0.38 0.42 16 40 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 41 H 0.09 1.52 8.04 -51.93 -0.42 1.11 16 42 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 47 H 0.35 6.76 8.17 -39.29 -0.32 6.43 16 48 H 0.04 0.65 7.44 -51.92 -0.39 0.26 16 49 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 50 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 51 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 421.95 15.07 6.36 6.36 Total: -1.00 -34.42 421.95 -9.53 -43.95 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -8.31 Total: 17.31 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.44 Total: 0.07 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: -0.29 Total: -58.52 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: 0.17 Total: -25.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.42 -9.53 -43.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277996110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.405 kcal (2) G-P(sol) polarization free energy of solvation -34.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds