Wall clock time and date at job start Wed Apr 1 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46827 * 2 1 4 4 C 1.53006 * 109.47115 * 119.99613 * 2 1 3 5 5 N 1.46499 * 109.47075 * 175.00205 * 4 2 1 6 6 C 1.46499 * 120.00225 * 89.99694 * 5 4 2 7 7 C 1.34780 * 119.99546 * 270.00256 * 5 4 2 8 8 O 1.21279 * 120.00031 * 359.97438 * 7 5 4 9 9 C 1.50699 * 119.99563 * 180.02562 * 7 5 4 10 10 C 1.53001 * 109.47045 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47410 * 179.97438 * 10 9 7 12 12 C 1.38233 * 119.99984 * 269.72877 * 11 10 9 13 13 C 1.38236 * 119.99967 * 179.76551 * 12 11 10 14 14 C 1.38231 * 119.99949 * 0.50447 * 13 12 11 15 15 C 1.38241 * 120.00256 * 359.74691 * 14 13 12 16 16 C 1.38231 * 120.00069 * 89.99876 * 11 10 9 17 17 N 1.46900 * 109.47084 * 239.99487 * 2 1 3 18 18 C 1.46903 * 110.99650 * 85.00304 * 17 2 1 19 19 C 1.50700 * 109.46675 * 180.02562 * 18 17 2 20 20 O 1.21289 * 120.00564 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99718 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99872 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99815 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99766 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00135 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46882 * 90.00336 * 26 24 22 28 28 H 1.48502 * 109.47254 * 210.00039 * 26 24 22 29 29 H 1.48496 * 109.47311 * 330.00658 * 26 24 22 30 30 H 1.09001 * 109.47402 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47343 * 300.00695 * 1 2 3 32 32 H 1.09000 * 109.47212 * 60.00016 * 1 2 3 33 33 H 1.08993 * 109.46802 * 54.99894 * 4 2 1 34 34 H 1.09000 * 109.46667 * 295.00003 * 4 2 1 35 35 H 1.09002 * 109.47391 * 270.00005 * 6 5 4 36 36 H 1.09001 * 109.46813 * 150.00061 * 6 5 4 37 37 H 1.09004 * 109.47041 * 30.00189 * 6 5 4 38 38 H 1.09004 * 109.47017 * 299.99442 * 9 7 5 39 39 H 1.09002 * 109.47507 * 59.99434 * 9 7 5 40 40 H 1.09004 * 109.47016 * 299.99759 * 10 9 7 41 41 H 1.09002 * 109.47172 * 59.99545 * 10 9 7 42 42 H 1.07998 * 120.00222 * 359.97438 * 12 11 10 43 43 H 1.08000 * 120.00329 * 180.22897 * 13 12 11 44 44 H 1.07997 * 120.00253 * 179.72617 * 14 13 12 45 45 H 1.07994 * 119.99986 * 179.97438 * 15 14 13 46 46 H 1.08008 * 120.00288 * 359.97438 * 16 11 10 47 47 H 1.00896 * 111.00247 * 321.04713 * 17 2 1 48 48 H 1.09008 * 109.46825 * 299.99683 * 18 17 2 49 49 H 1.08997 * 109.47647 * 60.00095 * 18 17 2 50 50 H 0.96998 * 120.00332 * 359.97438 * 21 19 18 51 51 H 0.97005 * 119.99943 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.3343 0.2342 1.7612 7 6 4.0757 -1.8986 0.6117 8 8 3.3850 -2.7767 0.1397 9 6 5.5776 -2.0070 0.5518 10 6 5.9673 -3.3093 -0.1503 11 6 7.4692 -3.4175 -0.2108 12 6 8.1561 -2.9042 -1.2951 13 6 9.5341 -2.9992 -1.3482 14 6 10.2245 -3.6165 -0.3220 15 6 9.5372 -4.1344 0.7599 16 6 8.1596 -4.0348 0.8154 17 7 2.0196 -0.6926 -1.1994 18 6 2.0825 0.2225 -2.3469 19 6 2.5873 -0.5221 -3.5559 20 8 2.8677 -1.6990 -3.4701 21 7 2.7273 0.1199 -4.7327 22 6 3.1871 -0.5573 -5.8326 23 1 3.4367 -1.6052 -5.7561 24 6 3.3309 0.1045 -7.0458 25 7 3.0266 1.3795 -7.1390 26 14 3.9580 -0.8180 -8.5442 27 1 2.8094 -1.4022 -9.2824 28 1 4.6915 0.1198 -9.4318 29 1 4.8715 -1.9052 -8.1097 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7197 1.2953 34 1 1.7516 -0.1581 2.1370 35 1 4.5400 0.9849 0.9982 36 1 5.2734 -0.1924 2.1137 37 1 3.8102 0.6991 2.5964 38 1 5.9812 -1.1599 -0.0029 39 1 5.9827 -2.0049 1.5638 40 1 5.5638 -4.1562 0.4047 41 1 5.5622 -3.3118 -1.1623 42 1 7.6164 -2.4261 -2.0991 43 1 10.0711 -2.5949 -2.1936 44 1 11.3007 -3.6946 -0.3656 45 1 10.0766 -4.6171 1.5614 46 1 7.6226 -4.4393 1.6608 47 1 1.4495 -1.4980 -1.4099 48 1 1.0870 0.6162 -2.5525 49 1 2.7588 1.0461 -2.1183 50 1 2.5027 1.0611 -4.8015 51 1 3.1274 1.8415 -7.9860 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277996110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:15 Heat of formation + Delta-G solvation = -72.818130 kcal Electronic energy + Delta-G solvation = -30776.914731 eV Core-core repulsion = 26674.910320 eV Total energy + Delta-G solvation = -4102.004411 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.90685 -40.19457 -39.93514 -37.91864 -36.09396 -35.70385 -34.90936 -33.30028 -32.13875 -31.75328 -30.61233 -28.18025 -27.94283 -26.99670 -25.74555 -24.85920 -23.43587 -22.08159 -21.61712 -21.12445 -20.00075 -19.81942 -18.10859 -17.82189 -17.35626 -17.02503 -16.90783 -16.52528 -16.38850 -16.12623 -15.88135 -15.82736 -15.48222 -15.10484 -14.75292 -14.47550 -14.27944 -14.12273 -13.98523 -13.74239 -13.59734 -13.52327 -13.45665 -13.33620 -13.21859 -13.04037 -12.96156 -12.76792 -12.62602 -12.44975 -12.29398 -12.17082 -12.13537 -11.88849 -11.81847 -11.71967 -11.52377 -10.55216 -10.34516 -10.02197 -9.81076 -9.58937 -9.48968 -9.05643 -8.48398 -5.96822 0.45230 0.51053 1.34983 1.38064 1.51277 1.96502 2.05300 2.26946 2.32855 2.89916 2.97609 3.18448 3.54144 3.68924 3.92295 3.97558 4.06893 4.15141 4.19903 4.22870 4.27869 4.32451 4.34353 4.39549 4.45547 4.45807 4.56437 4.60764 4.62358 4.66053 4.73520 4.77766 4.83578 4.95179 4.99839 5.04192 5.06131 5.09591 5.19903 5.25376 5.26525 5.38562 5.59851 5.64156 5.77350 5.80689 5.92900 6.14717 6.20325 6.46754 6.60058 6.66075 7.12047 7.55265 7.55632 8.12746 8.69277 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006436 B = 0.003635 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4349.431941 B = 7701.636908 C =11365.623909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 H 0.088 0.912 4 C 0.130 3.870 5 N -0.609 5.609 6 C 0.075 3.925 7 C 0.514 3.486 8 O -0.565 6.565 9 C -0.118 4.118 10 C -0.058 4.058 11 C -0.088 4.088 12 C -0.139 4.139 13 C -0.127 4.127 14 C -0.129 4.129 15 C -0.119 4.119 16 C -0.122 4.122 17 N -0.663 5.663 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.618 6.618 21 N -0.575 5.575 22 C -0.332 4.332 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.267 1.267 29 H -0.276 1.276 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.115 0.885 35 H 0.049 0.951 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.039 0.961 42 H 0.102 0.898 43 H 0.131 0.869 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.139 0.861 47 H 0.337 0.663 48 H 0.059 0.941 49 H 0.098 0.902 50 H 0.395 0.605 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 0.663 23.205 24.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.046 4.046 3 H 0.106 0.894 4 C 0.006 3.994 5 N -0.342 5.342 6 C -0.067 4.067 7 C 0.303 3.697 8 O -0.443 6.443 9 C -0.157 4.157 10 C -0.096 4.096 11 C -0.088 4.088 12 C -0.157 4.157 13 C -0.145 4.145 14 C -0.146 4.146 15 C -0.137 4.137 16 C -0.140 4.140 17 N -0.295 5.295 18 C -0.063 4.063 19 C 0.224 3.776 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.462 4.462 23 H 0.091 0.909 24 C -0.211 4.211 25 N -0.562 5.562 26 Si 0.814 3.186 27 H -0.196 1.196 28 H -0.191 1.191 29 H -0.201 1.201 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.133 0.867 35 H 0.067 0.933 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.149 0.851 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.156 0.844 47 H 0.155 0.845 48 H 0.077 0.923 49 H 0.116 0.884 50 H 0.229 0.771 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.749 -0.352 23.031 24.303 hybrid contribution -1.078 0.287 -1.812 2.128 sum 6.670 -0.066 21.219 22.243 Atomic orbital electron populations 1.22387 0.95705 1.02107 1.03174 1.22168 0.93598 0.98272 0.90529 0.89393 1.21549 0.79816 1.01031 0.96994 1.47636 1.06821 1.21235 1.58502 1.21986 0.95952 0.89939 0.98831 1.20764 0.90874 0.81532 0.76548 1.90675 1.65827 1.41642 1.46188 1.21547 0.91846 0.98857 1.03494 1.20173 0.91081 0.97821 1.00539 1.19922 0.94959 0.98696 0.95203 1.21205 0.95379 1.00882 0.98210 1.21376 0.93685 0.99652 0.99790 1.21476 1.01117 0.98118 0.93928 1.21494 0.93985 0.99282 0.98897 1.21279 0.94967 0.99323 0.98396 1.60110 1.58617 1.08127 1.02606 1.21513 1.00376 0.95271 0.89174 1.20961 0.83342 0.88064 0.85209 1.90540 1.56060 1.18360 1.85351 1.41922 1.58718 1.12498 1.08149 1.19609 1.42163 0.95769 0.88655 0.90862 1.25993 0.97275 0.96628 1.01211 1.69669 1.48803 1.09607 1.28073 0.84973 0.78473 0.77864 0.77297 1.19590 1.19135 1.20085 0.93192 0.89230 0.93155 0.92310 0.86664 0.93270 0.89923 0.88533 0.89496 0.86365 0.90797 0.94173 0.88011 0.85091 0.83656 0.83227 0.84363 0.84465 0.92294 0.88445 0.77105 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.45 9.16 71.98 0.66 -2.79 16 2 C 0.07 1.52 2.89 44.92 0.13 1.65 16 3 H 0.09 1.84 7.80 -2.39 -0.02 1.82 16 4 C 0.13 2.71 5.24 86.38 0.45 3.16 16 5 N -0.61 -13.83 2.78 -846.75 -2.35 -16.18 16 6 C 0.08 1.03 10.29 127.77 1.31 2.35 16 7 C 0.51 15.72 7.01 87.66 0.61 16.34 16 8 O -0.57 -22.95 14.71 -3.02 -0.04 -22.99 16 9 C -0.12 -2.98 4.23 29.85 0.13 -2.86 16 10 C -0.06 -1.74 4.63 29.85 0.14 -1.61 16 11 C -0.09 -2.31 5.13 -19.87 -0.10 -2.41 16 12 C -0.14 -3.89 9.70 22.27 0.22 -3.68 16 13 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 14 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 15 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 16 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 17 N -0.66 -23.09 4.15 -495.56 -2.06 -25.15 16 18 C 0.07 2.57 5.97 85.56 0.51 3.08 16 19 C 0.44 22.30 7.82 87.66 0.69 22.99 16 20 O -0.62 -37.22 15.78 -3.06 -0.05 -37.27 16 21 N -0.57 -31.06 5.29 -306.98 -1.62 -32.68 16 22 C -0.33 -19.79 9.68 84.04 0.81 -18.98 16 23 H 0.07 4.70 7.16 -2.91 -0.02 4.68 16 24 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 25 N -0.92 -50.99 13.05 21.66 0.28 -50.70 16 26 Si 0.99 44.61 29.55 68.60 2.03 46.64 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 29 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 30 H 0.05 1.09 8.13 -2.39 -0.02 1.07 16 31 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.05 1.08 7.45 -2.39 -0.02 1.06 16 33 H 0.06 1.52 7.42 -2.39 -0.02 1.50 16 34 H 0.12 1.43 7.89 -2.39 -0.02 1.41 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.91 6.44 -2.39 -0.02 0.89 16 37 H 0.10 0.76 7.89 -2.38 -0.02 0.74 16 38 H 0.09 2.25 8.11 -2.39 -0.02 2.23 16 39 H 0.12 2.11 7.40 -2.39 -0.02 2.09 16 40 H 0.07 2.17 8.04 -2.39 -0.02 2.16 16 41 H 0.04 1.56 8.04 -2.39 -0.02 1.55 16 42 H 0.10 3.23 8.06 -2.91 -0.02 3.21 16 43 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 45 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 46 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 47 H 0.34 13.60 8.17 -89.70 -0.73 12.87 16 48 H 0.06 1.95 7.44 -2.38 -0.02 1.94 16 49 H 0.10 3.26 8.06 -2.39 -0.02 3.24 16 50 H 0.40 20.18 7.90 -92.71 -0.73 19.45 16 51 H 0.28 14.34 8.31 -92.70 -0.77 13.57 16 Total: -1.00 -80.64 421.95 2.57 -78.07 By element: Atomic # 1 Polarization: 52.72 SS G_CDS: -0.53 Total: 52.19 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: 6.91 Total: 8.07 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -5.75 Total: -124.71 kcal Atomic # 8 Polarization: -60.17 SS G_CDS: -0.09 Total: -60.26 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -80.64 2.57 -78.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277996110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.251 kcal (2) G-P(sol) polarization free energy of solvation -80.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds