Wall clock time and date at job start Wed Apr 1 2020 05:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47500 * 180.02562 * 10 9 7 12 12 C 1.38241 * 119.99862 * 269.73216 * 11 10 9 13 13 C 1.38235 * 119.99601 * 179.76707 * 12 11 10 14 14 C 1.38233 * 120.00088 * 0.49923 * 13 12 11 15 15 C 1.38228 * 120.00177 * 359.75128 * 14 13 12 16 16 C 1.38233 * 119.99962 * 89.99846 * 11 10 9 17 17 N 1.46907 * 109.47143 * 120.00170 * 2 1 3 18 18 C 1.46897 * 110.99511 * 275.00231 * 17 2 1 19 19 C 1.50705 * 109.46817 * 179.97438 * 18 17 2 20 20 O 1.21293 * 120.00257 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99802 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99646 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00115 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99810 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99752 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47167 * 90.00175 * 26 24 22 28 28 H 1.48501 * 109.47061 * 210.00044 * 26 24 22 29 29 H 1.48507 * 109.47078 * 329.99937 * 26 24 22 30 30 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 32 32 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 33 33 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 34 34 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 35 35 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 36 36 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 37 37 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 38 38 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 39 39 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 40 40 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 41 41 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 42 42 H 1.07999 * 119.99952 * 359.97438 * 12 11 10 43 43 H 1.08002 * 119.99578 * 180.23273 * 13 12 11 44 44 H 1.08002 * 120.00095 * 179.72911 * 14 13 12 45 45 H 1.08004 * 120.00395 * 179.97438 * 15 14 13 46 46 H 1.08002 * 120.00199 * 0.02562 * 16 11 10 47 47 H 1.00896 * 110.99803 * 38.95246 * 17 2 1 48 48 H 1.09000 * 109.47336 * 299.99235 * 18 17 2 49 49 H 1.08996 * 109.47996 * 59.99736 * 18 17 2 50 50 H 0.96992 * 120.00322 * 359.97438 * 21 19 18 51 51 H 0.97001 * 119.99824 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 6 5.9673 -3.3110 0.1478 11 6 7.4692 -3.4219 0.2033 12 6 8.1543 -4.0484 -0.8210 13 6 9.5324 -4.1459 -0.7724 14 6 10.2244 -3.6260 0.3053 15 6 9.5390 -3.0041 1.3320 16 6 8.1613 -2.9020 1.2810 17 7 2.0197 -0.6926 1.1995 18 6 2.0824 0.2226 2.3469 19 6 2.5872 -0.5219 3.5560 20 8 2.8668 -1.6990 3.4705 21 7 2.7281 0.1204 4.7325 22 6 3.1869 -0.5570 5.8327 23 1 3.4351 -1.6053 5.7567 24 6 3.3326 0.1054 7.0455 25 7 3.0302 1.3808 7.1381 26 14 3.9571 -0.8177 8.5446 27 1 5.4382 -0.7267 8.6005 28 1 3.3775 -0.2169 9.7728 29 1 3.5518 -2.2434 8.4523 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7198 -1.2951 35 1 4.5381 0.0038 -2.8129 36 1 3.8114 1.1849 -1.6971 37 1 5.2745 0.2915 -1.2182 38 1 5.9791 -2.0106 -1.5699 39 1 5.9847 -1.1625 -0.0050 40 1 5.5659 -3.3099 1.1612 41 1 5.5602 -4.1586 -0.4035 42 1 7.6132 -4.4587 -1.6608 43 1 10.0679 -4.6320 -1.5745 44 1 11.3008 -3.7060 0.3454 45 1 10.0797 -2.5983 2.1743 46 1 7.6257 -2.4167 2.0835 47 1 1.4495 -1.4979 1.4100 48 1 2.7588 1.0461 2.1183 49 1 1.0870 0.6163 2.5525 50 1 2.5049 1.0619 4.8009 51 1 3.1323 1.8432 7.9846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277996113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:19 Heat of formation + Delta-G solvation = -50.455913 kcal Electronic energy + Delta-G solvation = -30772.073337 eV Core-core repulsion = 26671.038624 eV Total energy + Delta-G solvation = -4101.034713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.83796 -39.10715 -38.21048 -36.65672 -34.78374 -33.91267 -33.76640 -31.26896 -30.88245 -30.81228 -29.63771 -27.37964 -26.19465 -26.05202 -24.13092 -23.67876 -22.56027 -21.10502 -20.59180 -19.25891 -18.79923 -17.81931 -17.11527 -16.44701 -16.24257 -15.92511 -15.57101 -15.18484 -14.98763 -14.95794 -14.56816 -14.43154 -13.84395 -13.72106 -13.67674 -13.36888 -13.16847 -13.03926 -12.99297 -12.63306 -12.57043 -12.36341 -12.20782 -12.08995 -12.02620 -11.71245 -11.53242 -11.46162 -11.28431 -11.18411 -10.99792 -10.95288 -10.86145 -10.70562 -10.35453 -10.16160 -9.44073 -9.38638 -8.92723 -8.67098 -8.53124 -8.24354 -7.90124 -7.78797 -6.36097 -3.76214 1.34361 1.39560 3.06561 3.21395 3.26570 3.29379 3.36018 3.78982 4.00232 4.16965 4.41841 4.65541 4.85793 4.93829 4.95942 5.02101 5.06340 5.13534 5.16058 5.20731 5.25238 5.29301 5.29802 5.37281 5.38854 5.49516 5.53778 5.54827 5.57038 5.70172 5.74261 5.79457 5.85408 5.94216 5.97734 6.00628 6.12077 6.13744 6.15834 6.36216 6.38651 6.45287 6.51653 6.71009 6.72761 7.01645 7.40740 7.60681 7.65970 7.87934 8.13611 8.63895 8.69231 9.24998 9.62054 10.14969 10.82036 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006442 B = 0.003628 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4345.489444 B = 7716.109235 C =11375.593653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.065 3.935 3 H 0.073 0.927 4 C 0.131 3.869 5 N -0.613 5.613 6 C 0.082 3.918 7 C 0.525 3.475 8 O -0.511 6.511 9 C -0.127 4.127 10 C -0.068 4.068 11 C -0.076 4.076 12 C -0.120 4.120 13 C -0.123 4.123 14 C -0.130 4.130 15 C -0.118 4.118 16 C -0.113 4.113 17 N -0.648 5.648 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.573 6.573 21 N -0.569 5.569 22 C -0.295 4.295 23 H 0.102 0.898 24 C 0.021 3.979 25 N -0.905 5.905 26 Si 0.928 3.072 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.127 0.873 47 H 0.353 0.647 48 H 0.079 0.921 49 H 0.038 0.962 50 H 0.391 0.609 51 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.034 -0.702 -20.816 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.047 4.047 3 H 0.092 0.908 4 C 0.007 3.993 5 N -0.347 5.347 6 C -0.061 4.061 7 C 0.313 3.687 8 O -0.385 6.385 9 C -0.167 4.167 10 C -0.105 4.105 11 C -0.076 4.076 12 C -0.138 4.138 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.131 4.131 17 N -0.281 5.281 18 C -0.081 4.081 19 C 0.227 3.773 20 O -0.456 6.456 21 N -0.206 5.206 22 C -0.425 4.425 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.547 5.547 26 Si 0.755 3.245 27 H -0.205 1.205 28 H -0.210 1.210 29 H -0.194 1.194 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.145 0.855 47 H 0.174 0.826 48 H 0.097 0.903 49 H 0.056 0.944 50 H 0.223 0.777 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.528 -1.804 -20.597 21.682 hybrid contribution -0.698 0.705 1.141 1.512 sum 5.830 -1.100 -19.456 20.341 Atomic orbital electron populations 1.22476 0.97218 1.02392 1.02070 1.22011 0.92325 0.98054 0.92307 0.90834 1.21402 0.80284 1.01677 0.95945 1.47515 1.06041 1.21544 1.59602 1.21698 0.95795 0.90919 0.97736 1.20310 0.90088 0.81335 0.77008 1.90699 1.64657 1.39620 1.43521 1.21586 0.93165 0.99943 1.01994 1.20368 0.89983 0.96849 1.03325 1.20007 0.95913 0.97311 0.94333 1.21062 0.94212 0.99958 0.98562 1.21096 0.94355 1.00295 0.98378 1.21111 0.99657 0.99365 0.94659 1.21187 0.94480 0.99297 0.98665 1.21247 0.94264 0.99342 0.98200 1.60104 1.57779 1.08390 1.01797 1.21684 0.99386 0.95706 0.91350 1.19866 0.84937 0.88320 0.84135 1.90565 1.54510 1.16028 1.84461 1.41871 1.58409 1.12354 1.07979 1.19693 1.39676 0.96340 0.86785 0.88027 1.25228 0.97865 0.95771 0.99161 1.69613 1.49119 1.08850 1.27087 0.85888 0.78788 0.79539 0.80268 1.20454 1.20999 1.19440 0.92168 0.92369 0.92337 0.90979 0.90085 0.93258 0.91567 0.91180 0.89873 0.89136 0.89250 0.90546 0.86270 0.86422 0.86464 0.86129 0.85550 0.82617 0.90287 0.94374 0.77652 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.16 37.16 0.34 -1.61 16 2 C 0.07 0.80 2.89 -67.71 -0.20 0.61 16 3 H 0.07 0.87 7.80 -51.93 -0.40 0.46 16 4 C 0.13 1.48 5.20 -4.05 -0.02 1.45 16 5 N -0.61 -7.32 2.78 -181.58 -0.50 -7.82 16 6 C 0.08 0.68 10.24 59.84 0.61 1.30 16 7 C 0.52 7.79 7.02 -10.98 -0.08 7.72 16 8 O -0.51 -9.69 14.69 5.56 0.08 -9.61 16 9 C -0.13 -1.56 4.23 -27.89 -0.12 -1.68 16 10 C -0.07 -0.93 4.63 -27.88 -0.13 -1.06 16 11 C -0.08 -0.95 5.13 -104.62 -0.54 -1.49 16 12 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 13 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 14 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 15 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 16 C -0.11 -1.47 9.70 -39.58 -0.38 -1.85 16 17 N -0.65 -11.02 4.14 -107.99 -0.45 -11.47 16 18 C 0.05 0.95 5.97 -4.97 -0.03 0.92 16 19 C 0.44 10.78 7.82 -10.98 -0.09 10.69 16 20 O -0.57 -16.15 15.78 5.55 0.09 -16.06 16 21 N -0.57 -14.77 5.29 -10.96 -0.06 -14.83 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 23 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.05 13.05 55.50 0.72 -24.33 16 26 Si 0.93 21.53 29.55 -169.99 -5.02 16.50 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 30 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 31 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 37 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 38 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 39 H 0.09 1.11 7.40 -51.93 -0.38 0.73 16 40 H 0.09 1.52 8.04 -51.93 -0.42 1.10 16 41 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 44 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 45 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 46 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.35 6.75 8.17 -39.29 -0.32 6.43 16 48 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 49 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 50 H 0.39 9.73 7.90 -40.82 -0.32 9.40 16 51 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 422.20 15.07 6.36 6.36 Total: -1.00 -34.36 422.20 -9.55 -43.91 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -8.33 Total: 17.27 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -2.44 Total: 0.07 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: -0.28 Total: -58.45 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: 0.17 Total: -25.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.36 -9.55 -43.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277996113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.542 kcal (2) G-P(sol) polarization free energy of solvation -34.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds