Wall clock time and date at job start Wed Apr 1 2020 05:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47443 * 2 1 4 4 C 1.53000 * 109.47495 * 239.99779 * 2 1 3 5 5 N 1.46493 * 109.47637 * 184.99964 * 4 2 1 6 6 C 1.46494 * 120.00444 * 269.72749 * 5 4 2 7 7 C 1.34784 * 119.99864 * 90.00039 * 5 4 2 8 8 O 1.21283 * 119.99649 * 359.72839 * 7 5 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 5 4 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47500 * 180.02562 * 10 9 7 12 12 C 1.38241 * 119.99862 * 269.73216 * 11 10 9 13 13 C 1.38235 * 119.99601 * 179.76707 * 12 11 10 14 14 C 1.38233 * 120.00088 * 0.49923 * 13 12 11 15 15 C 1.38228 * 120.00177 * 359.75128 * 14 13 12 16 16 C 1.38233 * 119.99962 * 89.99846 * 11 10 9 17 17 N 1.46907 * 109.47143 * 120.00170 * 2 1 3 18 18 C 1.46897 * 110.99511 * 275.00231 * 17 2 1 19 19 C 1.50705 * 109.46817 * 179.97438 * 18 17 2 20 20 O 1.21293 * 120.00257 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99802 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99646 * 179.97438 * 21 19 18 23 23 H 1.08000 * 120.00115 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99810 * 179.97438 * 22 21 19 25 25 N 1.31406 * 119.99752 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47167 * 90.00175 * 26 24 22 28 28 H 1.48501 * 109.47061 * 210.00044 * 26 24 22 29 29 H 1.48507 * 109.47078 * 329.99937 * 26 24 22 30 30 H 1.09000 * 109.47443 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47159 * 300.00162 * 1 2 3 32 32 H 1.09001 * 109.47066 * 59.99820 * 1 2 3 33 33 H 1.09002 * 109.46747 * 64.99793 * 4 2 1 34 34 H 1.08996 * 109.47074 * 305.00519 * 4 2 1 35 35 H 1.08995 * 109.47693 * 270.27497 * 6 5 4 36 36 H 1.09003 * 109.47006 * 30.27410 * 6 5 4 37 37 H 1.09004 * 109.47665 * 150.27102 * 6 5 4 38 38 H 1.08998 * 109.47224 * 299.99701 * 9 7 5 39 39 H 1.09002 * 109.47054 * 60.00213 * 9 7 5 40 40 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 41 41 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 42 42 H 1.07999 * 119.99952 * 359.97438 * 12 11 10 43 43 H 1.08002 * 119.99578 * 180.23273 * 13 12 11 44 44 H 1.08002 * 120.00095 * 179.72911 * 14 13 12 45 45 H 1.08004 * 120.00395 * 179.97438 * 15 14 13 46 46 H 1.08002 * 120.00199 * 0.02562 * 16 11 10 47 47 H 1.00896 * 110.99803 * 38.95246 * 17 2 1 48 48 H 1.09000 * 109.47336 * 299.99235 * 18 17 2 49 49 H 1.08996 * 109.47996 * 59.99736 * 18 17 2 50 50 H 0.96992 * 120.00322 * 359.97438 * 21 19 18 51 51 H 0.97001 * 119.99824 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1905 6 6 4.3344 0.2310 -1.7665 7 6 4.0758 -1.8988 -0.6115 8 8 3.3850 -2.7742 -0.1346 9 6 5.5776 -2.0099 -0.5566 10 6 5.9673 -3.3110 0.1478 11 6 7.4692 -3.4219 0.2033 12 6 8.1543 -4.0484 -0.8210 13 6 9.5324 -4.1459 -0.7724 14 6 10.2244 -3.6260 0.3053 15 6 9.5390 -3.0041 1.3320 16 6 8.1613 -2.9020 1.2810 17 7 2.0197 -0.6926 1.1995 18 6 2.0824 0.2226 2.3469 19 6 2.5872 -0.5219 3.5560 20 8 2.8668 -1.6990 3.4705 21 7 2.7281 0.1204 4.7325 22 6 3.1869 -0.5570 5.8327 23 1 3.4351 -1.6053 5.7567 24 6 3.3326 0.1054 7.0455 25 7 3.0302 1.3808 7.1381 26 14 3.9571 -0.8177 8.5446 27 1 5.4382 -0.7267 8.6005 28 1 3.3775 -0.2169 9.7728 29 1 3.5518 -2.2434 8.4523 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -0.1584 -2.1369 34 1 1.6054 -1.7198 -1.2951 35 1 4.5381 0.0038 -2.8129 36 1 3.8114 1.1849 -1.6971 37 1 5.2745 0.2915 -1.2182 38 1 5.9791 -2.0106 -1.5699 39 1 5.9847 -1.1625 -0.0050 40 1 5.5659 -3.3099 1.1612 41 1 5.5602 -4.1586 -0.4035 42 1 7.6132 -4.4587 -1.6608 43 1 10.0679 -4.6320 -1.5745 44 1 11.3008 -3.7060 0.3454 45 1 10.0797 -2.5983 2.1743 46 1 7.6257 -2.4167 2.0835 47 1 1.4495 -1.4979 1.4100 48 1 2.7588 1.0461 2.1183 49 1 1.0870 0.6163 2.5525 50 1 2.5049 1.0619 4.8009 51 1 3.1323 1.8432 7.9846 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277996113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:18 Heat of formation + Delta-G solvation = -72.811895 kcal Electronic energy + Delta-G solvation = -30773.042765 eV Core-core repulsion = 26671.038624 eV Total energy + Delta-G solvation = -4102.004141 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.90395 -40.19124 -39.93274 -37.91759 -36.09043 -35.69911 -34.90752 -33.29785 -32.13532 -31.75258 -30.60997 -28.18415 -27.93886 -26.99327 -25.74206 -24.85841 -23.43509 -22.07832 -21.60688 -21.11995 -19.99779 -19.81476 -18.10851 -17.81412 -17.35603 -17.02742 -16.88974 -16.54458 -16.38321 -16.11954 -15.88536 -15.82886 -15.48320 -15.11257 -14.73862 -14.47515 -14.28075 -14.12578 -13.96990 -13.73504 -13.59164 -13.52489 -13.43060 -13.35332 -13.19109 -13.03844 -12.95151 -12.78280 -12.62399 -12.44926 -12.34170 -12.15699 -12.12809 -11.88532 -11.81898 -11.71801 -11.52035 -10.55079 -10.34108 -10.01898 -9.81008 -9.58467 -9.48053 -9.04990 -8.48208 -5.96544 0.45304 0.51111 1.35186 1.38242 1.51382 1.97384 2.05707 2.27115 2.32469 2.90007 2.97982 3.18743 3.54672 3.69117 3.92561 3.97661 4.06744 4.15622 4.20369 4.24698 4.26321 4.32619 4.34483 4.39043 4.44800 4.48031 4.56940 4.59397 4.63619 4.65761 4.71103 4.78375 4.85495 4.94614 4.98994 5.05156 5.06642 5.09919 5.20032 5.25376 5.26719 5.38807 5.59916 5.64201 5.77330 5.80729 5.93145 6.14753 6.20727 6.46987 6.60367 6.66539 7.12349 7.55664 7.56071 8.13176 8.69474 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006442 B = 0.003628 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4345.489444 B = 7716.109235 C =11375.593653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.065 3.935 3 H 0.089 0.911 4 C 0.130 3.870 5 N -0.610 5.610 6 C 0.075 3.925 7 C 0.514 3.486 8 O -0.565 6.565 9 C -0.117 4.117 10 C -0.058 4.058 11 C -0.088 4.088 12 C -0.122 4.122 13 C -0.119 4.119 14 C -0.129 4.129 15 C -0.127 4.127 16 C -0.138 4.138 17 N -0.663 5.663 18 C 0.069 3.931 19 C 0.437 3.563 20 O -0.618 6.618 21 N -0.575 5.575 22 C -0.332 4.332 23 H 0.073 0.927 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.270 1.270 28 H -0.267 1.267 29 H -0.276 1.276 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.131 0.869 46 H 0.102 0.898 47 H 0.337 0.663 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.395 0.605 51 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.251 0.780 -23.025 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.045 4.045 3 H 0.107 0.893 4 C 0.006 3.994 5 N -0.342 5.342 6 C -0.067 4.067 7 C 0.302 3.698 8 O -0.443 6.443 9 C -0.157 4.157 10 C -0.096 4.096 11 C -0.088 4.088 12 C -0.140 4.140 13 C -0.137 4.137 14 C -0.146 4.146 15 C -0.145 4.145 16 C -0.156 4.156 17 N -0.294 5.294 18 C -0.063 4.063 19 C 0.224 3.776 20 O -0.503 6.503 21 N -0.213 5.213 22 C -0.462 4.462 23 H 0.091 0.909 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.195 1.195 28 H -0.192 1.192 29 H -0.201 1.201 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.135 0.865 39 H 0.107 0.893 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.163 0.837 45 H 0.149 0.851 46 H 0.121 0.879 47 H 0.155 0.845 48 H 0.116 0.884 49 H 0.077 0.923 50 H 0.229 0.771 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.744 -0.236 -22.845 24.123 hybrid contribution -1.064 0.262 1.762 2.075 sum 6.680 0.027 -21.084 22.117 Atomic orbital electron populations 1.22386 0.95717 1.02101 1.03178 1.22167 0.93585 0.98299 0.90497 0.89289 1.21516 0.79845 1.01046 0.96957 1.47634 1.06802 1.21364 1.58434 1.21970 0.95405 0.90456 0.98864 1.20771 0.90871 0.81536 0.76584 1.90677 1.65819 1.41781 1.46055 1.21539 0.91847 0.98816 1.03501 1.20173 0.91081 0.97825 1.00533 1.19926 0.94956 0.98635 0.95269 1.21279 0.95008 0.99315 0.98392 1.21489 0.93941 0.99309 0.98929 1.21473 1.01121 0.98126 0.93924 1.21379 0.93725 0.99626 0.99761 1.21208 0.95347 1.00853 0.98242 1.60115 1.58604 1.08114 1.02598 1.21514 1.00389 0.95278 0.89158 1.20968 0.83334 0.88066 0.85211 1.90542 1.56081 1.18353 1.85346 1.41919 1.58755 1.12462 1.08152 1.19610 1.42198 0.95717 0.88666 0.90869 1.25991 0.97268 0.96637 1.01210 1.69666 1.48724 1.09594 1.28160 0.84975 0.78604 0.77941 0.77103 1.19522 1.19198 1.20104 0.93220 0.93121 0.89246 0.86767 0.92336 0.90682 0.89737 0.91265 0.86549 0.89346 0.94115 0.90862 0.84426 0.83257 0.83658 0.85063 0.87931 0.84479 0.88375 0.92302 0.77103 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 9.16 71.98 0.66 -2.77 16 2 C 0.07 1.51 2.89 44.91 0.13 1.64 16 3 H 0.09 1.82 7.80 -2.39 -0.02 1.80 16 4 C 0.13 2.72 5.20 86.38 0.45 3.17 16 5 N -0.61 -13.82 2.78 -846.78 -2.35 -16.17 16 6 C 0.08 1.03 10.24 127.77 1.31 2.34 16 7 C 0.51 15.71 7.02 87.65 0.62 16.32 16 8 O -0.57 -22.95 14.69 -3.04 -0.04 -23.00 16 9 C -0.12 -2.97 4.23 29.85 0.13 -2.84 16 10 C -0.06 -1.74 4.63 29.85 0.14 -1.60 16 11 C -0.09 -2.31 5.13 -19.87 -0.10 -2.41 16 12 C -0.12 -2.53 9.70 22.27 0.22 -2.31 16 13 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 14 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 15 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 16 C -0.14 -3.86 9.70 22.27 0.22 -3.64 16 17 N -0.66 -22.96 4.14 -495.57 -2.05 -25.01 16 18 C 0.07 2.55 5.97 85.56 0.51 3.06 16 19 C 0.44 22.23 7.82 87.66 0.69 22.91 16 20 O -0.62 -37.15 15.78 -3.07 -0.05 -37.20 16 21 N -0.57 -30.98 5.29 -306.97 -1.62 -32.60 16 22 C -0.33 -19.75 9.68 84.04 0.81 -18.94 16 23 H 0.07 4.69 7.16 -2.91 -0.02 4.67 16 24 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 25 N -0.92 -50.90 13.05 21.66 0.28 -50.62 16 26 Si 0.99 44.56 29.55 68.60 2.03 46.58 16 27 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 30 H 0.05 1.08 8.13 -2.39 -0.02 1.07 16 31 H 0.05 1.08 7.45 -2.39 -0.02 1.06 16 32 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.45 8.07 -2.39 -0.02 1.43 16 34 H 0.06 1.52 7.42 -2.39 -0.02 1.50 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.08 0.89 8.07 -2.39 -0.02 0.87 16 37 H 0.07 0.99 6.44 -2.38 -0.02 0.97 16 38 H 0.12 2.12 8.11 -2.39 -0.02 2.10 16 39 H 0.09 2.27 7.40 -2.39 -0.02 2.25 16 40 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 41 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.15 1.85 8.06 -2.91 -0.02 1.82 16 45 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.10 3.22 8.06 -2.91 -0.02 3.20 16 47 H 0.34 13.57 8.17 -89.70 -0.73 12.83 16 48 H 0.10 3.25 8.06 -2.39 -0.02 3.23 16 49 H 0.06 1.94 7.44 -2.39 -0.02 1.92 16 50 H 0.40 20.12 7.90 -92.71 -0.73 19.39 16 51 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -80.32 422.20 2.57 -77.75 By element: Atomic # 1 Polarization: 52.76 SS G_CDS: -0.53 Total: 52.23 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 6.90 Total: 8.05 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -5.74 Total: -124.41 kcal Atomic # 8 Polarization: -60.11 SS G_CDS: -0.09 Total: -60.20 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -80.32 2.57 -77.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277996113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.941 kcal (2) G-P(sol) polarization free energy of solvation -80.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds