Wall clock time and date at job start Wed Apr 1 2020 04:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47388 * 71.53608 * 3 2 1 5 5 C 1.34772 * 120.00433 * 84.34513 * 4 3 2 6 6 O 1.21290 * 119.99756 * 3.52553 * 5 4 3 7 7 C 1.50699 * 120.00305 * 183.52950 * 5 4 3 8 8 H 1.08997 * 109.46916 * 304.51380 * 7 5 4 9 9 C 1.52992 * 109.47197 * 64.51659 * 7 5 4 10 10 C 1.53004 * 109.47012 * 184.51729 * 7 5 4 11 11 H 1.09003 * 110.21735 * 60.47262 * 10 7 5 12 12 C 1.54480 * 110.24422 * 182.49448 * 10 7 5 13 13 C 1.54780 * 101.69367 * 93.39373 * 12 10 7 14 14 C 1.51288 * 104.12056 * 25.09845 * 13 12 10 15 15 O 1.21276 * 124.94267 * 163.67600 * 14 13 12 16 16 N 1.34418 * 110.11440 * 343.40833 * 14 13 12 17 17 C 1.46502 * 119.99932 * 264.34832 * 4 3 2 18 18 C 1.53036 * 109.46253 * 56.19456 * 17 4 3 19 19 C 1.53198 * 109.31370 * 178.61603 * 18 17 4 20 20 N 1.46924 * 108.77577 * 54.63714 * 19 18 17 21 21 C 1.36935 * 120.63211 * 126.36539 * 20 19 18 22 22 H 1.07995 * 120.00143 * 208.74462 * 21 20 19 23 23 C 1.38809 * 119.99902 * 28.75424 * 21 20 19 24 24 N 1.31629 * 120.00151 * 14.86262 * 23 21 20 25 25 Si 1.86798 * 120.00088 * 194.86652 * 23 21 20 26 26 H 1.48499 * 109.47057 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47279 * 119.99505 * 25 23 21 28 28 H 1.48505 * 109.47185 * 239.99690 * 25 23 21 29 29 C 1.46929 * 118.73418 * 306.39370 * 20 19 18 30 30 C 1.53043 * 109.45805 * 296.12486 * 17 4 3 31 31 H 4.40644 * 5.51464 * 180.02562 * 4 1 2 32 32 H 1.09005 * 109.46896 * 311.53234 * 3 2 1 33 33 H 1.09001 * 109.46593 * 191.53806 * 3 2 1 34 34 H 1.09001 * 109.47233 * 65.05188 * 9 7 5 35 35 H 1.09004 * 109.46896 * 185.04240 * 9 7 5 36 36 H 1.08994 * 109.47420 * 305.04577 * 9 7 5 37 37 H 1.08998 * 110.96848 * 211.70261 * 12 10 7 38 38 H 1.08996 * 110.96791 * 335.42777 * 12 10 7 39 39 H 1.09001 * 110.61430 * 266.39953 * 13 12 10 40 40 H 1.08993 * 110.43308 * 143.70445 * 13 12 10 41 41 H 0.96998 * 124.35218 * 179.83927 * 16 14 13 42 42 H 1.09001 * 109.46082 * 176.15517 * 17 4 3 43 43 H 1.08997 * 109.50098 * 298.56889 * 18 17 4 44 44 H 1.08999 * 109.50118 * 58.66193 * 18 17 4 45 45 H 1.08997 * 109.58636 * 294.84596 * 19 18 17 46 46 H 1.09002 * 109.58557 * 174.42084 * 19 18 17 47 47 H 0.96992 * 119.99863 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.58425 * 293.81904 * 29 20 19 49 49 H 1.09004 * 109.58459 * 173.39794 * 29 20 19 50 50 H 1.08996 * 109.49788 * 301.33931 * 30 17 4 51 51 H 1.09003 * 109.49757 * 61.40804 * 30 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4365 -1.3100 5 6 3.2505 0.4518 -2.3169 6 8 3.0115 1.6247 -2.1213 7 6 3.6769 -0.0122 -3.6858 8 1 4.6273 -0.5404 -3.6107 9 6 2.6149 -0.9523 -4.2594 10 6 3.8377 1.1985 -4.6075 11 1 4.5983 1.8729 -4.2142 12 6 4.2141 0.7385 -6.0334 13 6 2.8255 0.6504 -6.7114 14 6 1.9666 1.6118 -5.9198 15 8 0.8975 2.0516 -6.2864 16 7 2.5580 1.9031 -4.7484 17 6 3.4972 -1.8395 -1.5257 18 6 2.3042 -2.7335 -1.1799 19 6 2.6756 -4.1969 -1.4395 20 7 3.9022 -4.5128 -0.6948 21 6 3.9435 -5.5815 0.1603 22 1 4.6041 -5.5643 1.0145 23 6 3.1365 -6.6869 -0.0708 24 7 2.5574 -6.8457 -1.2422 25 14 2.8722 -7.9493 1.2804 26 1 3.6282 -7.5430 2.4922 27 1 1.4252 -8.0326 1.6039 28 1 3.3535 -9.2764 0.8191 29 6 5.0833 -3.6597 -0.8847 30 6 4.6850 -2.2023 -0.6313 31 1 -1.0499 0.0001 -0.0003 32 1 3.0097 -0.6806 0.7693 33 1 3.0088 1.0078 0.2056 34 1 1.6886 -0.4002 -4.4185 35 1 2.9636 -1.3580 -5.2091 36 1 2.4358 -1.7684 -3.5595 37 1 4.8470 1.4761 -6.5268 38 1 4.6990 -0.2374 -6.0131 39 1 2.4281 -0.3622 -6.6419 40 1 2.8900 0.9653 -7.7529 41 1 2.1866 2.5018 -4.0817 42 1 3.7708 -1.9874 -2.5704 43 1 2.0456 -2.6047 -0.1289 44 1 1.4517 -2.4588 -1.8010 45 1 2.8464 -4.3470 -2.5055 46 1 1.8664 -4.8446 -1.1022 47 1 1.9932 -7.6179 -1.4035 48 1 5.4505 -3.7660 -1.9055 49 1 5.8627 -3.9530 -0.1814 50 1 5.5269 -1.5497 -0.8621 51 1 4.4042 -2.0781 0.4145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278184772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:06 Heat of formation + Delta-G solvation = 14.008980 kcal Electronic energy + Delta-G solvation = -32633.915054 eV Core-core repulsion = 28535.675749 eV Total energy + Delta-G solvation = -4098.239305 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.29780 -39.84084 -37.82073 -36.86581 -35.41637 -33.60080 -32.58515 -31.91080 -31.36136 -30.32201 -29.59005 -27.86339 -27.27131 -25.25922 -23.95736 -22.34837 -22.27349 -21.36198 -20.62045 -19.42850 -19.38485 -17.92110 -17.35768 -17.13112 -17.10222 -16.44809 -15.67132 -15.62913 -15.04337 -14.85136 -14.33104 -14.26499 -13.99120 -13.80030 -13.63719 -13.46547 -13.40105 -13.24121 -12.87712 -12.85903 -12.74957 -12.61469 -12.21143 -12.06096 -11.74542 -11.58008 -11.39029 -11.21065 -11.08578 -10.93430 -10.82631 -10.62800 -10.45111 -10.36092 -10.22161 -10.02384 -9.95911 -9.86110 -9.81044 -9.50902 -9.17097 -8.72472 -8.51323 -6.79361 -5.89052 -3.33573 2.42170 2.51986 2.65532 2.97086 3.30784 3.33589 3.39518 3.40672 3.42251 4.07549 4.22037 4.37137 4.40758 4.47428 4.55142 4.73470 4.82898 4.97692 5.00188 5.13013 5.29830 5.30799 5.35590 5.37820 5.40462 5.46247 5.49228 5.55011 5.56772 5.62770 5.67497 5.78316 5.87525 6.01744 6.03629 6.08623 6.20756 6.28672 6.41707 6.49763 6.58408 6.62939 6.76943 6.79334 7.03728 7.22516 7.40436 7.54795 7.70508 7.71925 8.10650 8.23366 8.35027 9.10778 9.73117 10.28490 11.19451 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003141 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.136516 B = 8912.455073 C = 9541.717617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.194 4.194 3 C 0.224 3.776 4 N -0.598 5.598 5 C 0.525 3.475 6 O -0.548 6.548 7 C -0.124 4.124 8 H 0.111 0.889 9 C -0.162 4.162 10 C 0.151 3.849 11 H 0.094 0.906 12 C -0.128 4.128 13 C -0.163 4.163 14 C 0.516 3.484 15 O -0.543 6.543 16 N -0.712 5.712 17 C 0.133 3.867 18 C -0.147 4.147 19 C 0.174 3.826 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.066 0.934 23 C 0.005 3.995 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.289 1.289 28 H -0.290 1.290 29 C 0.148 3.852 30 C -0.144 4.144 31 H 0.214 0.786 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.417 0.583 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.092 0.908 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.058 0.942 50 H 0.055 0.945 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 13.745 -5.930 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.102 3.898 4 N -0.328 5.328 5 C 0.314 3.686 6 O -0.427 6.427 7 C -0.146 4.146 8 H 0.129 0.871 9 C -0.219 4.219 10 C 0.045 3.955 11 H 0.112 0.888 12 C -0.166 4.166 13 C -0.203 4.203 14 C 0.303 3.697 15 O -0.421 6.421 16 N -0.368 5.368 17 C 0.031 3.969 18 C -0.187 4.187 19 C 0.047 3.953 20 N -0.314 5.314 21 C -0.384 4.384 22 H 0.084 0.916 23 C -0.194 4.194 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.216 1.216 29 C 0.021 3.979 30 C -0.184 4.184 31 H 0.231 0.769 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.258 0.742 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.038 0.962 46 H 0.110 0.890 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.077 0.923 50 H 0.074 0.926 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.001 14.368 -6.141 16.129 hybrid contribution -0.598 -0.632 1.140 1.434 sum 3.402 13.736 -5.001 15.009 Atomic orbital electron populations 1.24857 0.95887 1.01509 0.99081 1.23466 0.94854 0.99925 1.01233 1.18188 0.83742 1.01946 0.85907 1.48274 1.63798 1.10099 1.10673 1.20539 0.76630 0.85524 0.85925 1.90612 1.51135 1.17323 1.83591 1.21812 1.02130 0.98192 0.92469 0.87090 1.22205 0.98082 0.99277 1.02367 1.21387 0.86539 0.92496 0.95110 0.88776 1.22695 0.96696 1.03573 0.93603 1.22557 0.95518 1.01313 1.00893 1.20916 0.85343 0.81098 0.82393 1.90745 1.21921 1.56267 1.73147 1.46335 1.22575 1.47736 1.20114 1.21602 0.96297 0.78127 1.00848 1.22609 0.95602 0.98983 1.01493 1.20787 0.90859 0.89364 0.94257 1.44068 1.06363 1.30424 1.50541 1.19208 1.23379 0.93277 1.02524 0.91607 1.25066 1.01287 0.96891 0.96152 1.69996 1.34925 1.29478 1.20289 0.86232 0.77739 0.81279 0.81566 1.20239 1.21541 1.21642 1.20867 0.90779 0.88060 0.98213 1.22466 0.96376 0.99602 0.99928 0.76907 0.87789 0.88307 0.92104 0.90701 0.90095 0.89534 0.88635 0.87274 0.88258 0.74169 0.88565 0.92061 0.92984 0.96214 0.88967 0.93581 0.96216 0.92311 0.92603 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.69 19.25 29.55 0.57 -2.12 16 2 C -0.19 -2.84 12.60 -37.12 -0.47 -3.31 16 3 C 0.22 2.97 5.07 -6.83 -0.03 2.93 16 4 N -0.60 -7.86 2.36 -169.37 -0.40 -8.26 16 5 C 0.53 6.78 6.83 -10.99 -0.08 6.71 16 6 O -0.55 -8.24 14.16 5.55 0.08 -8.16 16 7 C -0.12 -1.21 1.68 -91.77 -0.15 -1.37 16 8 H 0.11 0.90 7.47 -51.93 -0.39 0.51 16 9 C -0.16 -1.70 7.13 37.15 0.26 -1.44 16 10 C 0.15 1.32 3.03 -67.01 -0.20 1.12 16 11 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 12 C -0.13 -0.80 6.22 -25.02 -0.16 -0.95 16 13 C -0.16 -1.35 6.05 -26.66 -0.16 -1.51 16 14 C 0.52 6.49 7.20 -10.86 -0.08 6.42 16 15 O -0.54 -9.27 18.03 5.56 0.10 -9.17 16 16 N -0.71 -8.12 4.87 -52.76 -0.26 -8.38 16 17 C 0.13 1.86 1.51 -67.89 -0.10 1.75 16 18 C -0.15 -2.50 4.37 -26.61 -0.12 -2.61 16 19 C 0.17 3.71 5.29 -3.71 -0.02 3.69 16 20 N -0.59 -13.28 2.99 -172.32 -0.52 -13.80 16 21 C -0.25 -6.49 9.59 -15.06 -0.14 -6.63 16 22 H 0.07 1.66 7.87 -52.49 -0.41 1.25 16 23 C 0.00 0.13 4.97 -17.43 -0.09 0.04 16 24 N -0.90 -24.70 11.11 55.49 0.62 -24.09 16 25 Si 0.90 20.74 29.58 -169.99 -5.03 15.71 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 C 0.15 2.65 6.52 -3.71 -0.02 2.63 16 30 C -0.14 -2.06 5.39 -26.61 -0.14 -2.20 16 31 H 0.21 2.24 7.80 -54.09 -0.42 1.82 16 32 H 0.10 1.31 6.55 -51.93 -0.34 0.97 16 33 H 0.10 1.26 7.55 -51.93 -0.39 0.86 16 34 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 35 H 0.07 0.62 5.72 -51.93 -0.30 0.32 16 36 H 0.08 0.99 4.51 -51.93 -0.23 0.75 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.45 7.54 -51.93 -0.39 0.06 16 39 H 0.11 0.85 6.14 -51.93 -0.32 0.53 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.42 5.37 7.71 -40.82 -0.31 5.06 16 42 H 0.10 1.25 4.34 -51.93 -0.23 1.03 16 43 H 0.06 1.12 7.20 -51.93 -0.37 0.75 16 44 H 0.05 0.87 7.52 -51.93 -0.39 0.48 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 2.30 6.03 -51.93 -0.31 1.99 16 47 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 48 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 50 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.06 0.96 6.89 -51.93 -0.36 0.60 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -32.06 389.59 -8.26 -40.32 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.60 Total: 6.81 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -1.13 Total: 3.14 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.56 Total: -54.52 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.18 Total: -17.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.06 -8.26 -40.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278184772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.328 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds