Wall clock time and date at job start Wed Apr 1 2020 04:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47388 * 71.53608 * 3 2 1 5 5 C 1.34772 * 120.00433 * 84.34513 * 4 3 2 6 6 O 1.21290 * 119.99756 * 3.52553 * 5 4 3 7 7 C 1.50699 * 120.00305 * 183.52950 * 5 4 3 8 8 H 1.08997 * 109.46916 * 304.51380 * 7 5 4 9 9 C 1.52992 * 109.47197 * 64.51659 * 7 5 4 10 10 C 1.53004 * 109.47012 * 184.51729 * 7 5 4 11 11 H 1.09003 * 110.21735 * 60.47262 * 10 7 5 12 12 C 1.54480 * 110.24422 * 182.49448 * 10 7 5 13 13 C 1.54780 * 101.69367 * 93.39373 * 12 10 7 14 14 C 1.51288 * 104.12056 * 25.09845 * 13 12 10 15 15 O 1.21276 * 124.94267 * 163.67600 * 14 13 12 16 16 N 1.34418 * 110.11440 * 343.40833 * 14 13 12 17 17 C 1.46502 * 119.99932 * 264.34832 * 4 3 2 18 18 C 1.53036 * 109.46253 * 56.19456 * 17 4 3 19 19 C 1.53198 * 109.31370 * 178.61603 * 18 17 4 20 20 N 1.46924 * 108.77577 * 54.63714 * 19 18 17 21 21 C 1.36935 * 120.63211 * 126.36539 * 20 19 18 22 22 H 1.07995 * 120.00143 * 208.74462 * 21 20 19 23 23 C 1.38809 * 119.99902 * 28.75424 * 21 20 19 24 24 N 1.31629 * 120.00151 * 14.86262 * 23 21 20 25 25 Si 1.86798 * 120.00088 * 194.86652 * 23 21 20 26 26 H 1.48499 * 109.47057 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47279 * 119.99505 * 25 23 21 28 28 H 1.48505 * 109.47185 * 239.99690 * 25 23 21 29 29 C 1.46929 * 118.73418 * 306.39370 * 20 19 18 30 30 C 1.53043 * 109.45805 * 296.12486 * 17 4 3 31 31 H 4.40644 * 5.51464 * 180.02562 * 4 1 2 32 32 H 1.09005 * 109.46896 * 311.53234 * 3 2 1 33 33 H 1.09001 * 109.46593 * 191.53806 * 3 2 1 34 34 H 1.09001 * 109.47233 * 65.05188 * 9 7 5 35 35 H 1.09004 * 109.46896 * 185.04240 * 9 7 5 36 36 H 1.08994 * 109.47420 * 305.04577 * 9 7 5 37 37 H 1.08998 * 110.96848 * 211.70261 * 12 10 7 38 38 H 1.08996 * 110.96791 * 335.42777 * 12 10 7 39 39 H 1.09001 * 110.61430 * 266.39953 * 13 12 10 40 40 H 1.08993 * 110.43308 * 143.70445 * 13 12 10 41 41 H 0.96998 * 124.35218 * 179.83927 * 16 14 13 42 42 H 1.09001 * 109.46082 * 176.15517 * 17 4 3 43 43 H 1.08997 * 109.50098 * 298.56889 * 18 17 4 44 44 H 1.08999 * 109.50118 * 58.66193 * 18 17 4 45 45 H 1.08997 * 109.58636 * 294.84596 * 19 18 17 46 46 H 1.09002 * 109.58557 * 174.42084 * 19 18 17 47 47 H 0.96992 * 119.99863 * 180.02562 * 24 23 21 48 48 H 1.09004 * 109.58425 * 293.81904 * 29 20 19 49 49 H 1.09004 * 109.58459 * 173.39794 * 29 20 19 50 50 H 1.08996 * 109.49788 * 301.33931 * 30 17 4 51 51 H 1.09003 * 109.49757 * 61.40804 * 30 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.4365 -1.3100 5 6 3.2505 0.4518 -2.3169 6 8 3.0115 1.6247 -2.1213 7 6 3.6769 -0.0122 -3.6858 8 1 4.6273 -0.5404 -3.6107 9 6 2.6149 -0.9523 -4.2594 10 6 3.8377 1.1985 -4.6075 11 1 4.5983 1.8729 -4.2142 12 6 4.2141 0.7385 -6.0334 13 6 2.8255 0.6504 -6.7114 14 6 1.9666 1.6118 -5.9198 15 8 0.8975 2.0516 -6.2864 16 7 2.5580 1.9031 -4.7484 17 6 3.4972 -1.8395 -1.5257 18 6 2.3042 -2.7335 -1.1799 19 6 2.6756 -4.1969 -1.4395 20 7 3.9022 -4.5128 -0.6948 21 6 3.9435 -5.5815 0.1603 22 1 4.6041 -5.5643 1.0145 23 6 3.1365 -6.6869 -0.0708 24 7 2.5574 -6.8457 -1.2422 25 14 2.8722 -7.9493 1.2804 26 1 3.6282 -7.5430 2.4922 27 1 1.4252 -8.0326 1.6039 28 1 3.3535 -9.2764 0.8191 29 6 5.0833 -3.6597 -0.8847 30 6 4.6850 -2.2023 -0.6313 31 1 -1.0499 0.0001 -0.0003 32 1 3.0097 -0.6806 0.7693 33 1 3.0088 1.0078 0.2056 34 1 1.6886 -0.4002 -4.4185 35 1 2.9636 -1.3580 -5.2091 36 1 2.4358 -1.7684 -3.5595 37 1 4.8470 1.4761 -6.5268 38 1 4.6990 -0.2374 -6.0131 39 1 2.4281 -0.3622 -6.6419 40 1 2.8900 0.9653 -7.7529 41 1 2.1866 2.5018 -4.0817 42 1 3.7708 -1.9874 -2.5704 43 1 2.0456 -2.6047 -0.1289 44 1 1.4517 -2.4588 -1.8010 45 1 2.8464 -4.3470 -2.5055 46 1 1.8664 -4.8446 -1.1022 47 1 1.9932 -7.6179 -1.4035 48 1 5.4505 -3.7660 -1.9055 49 1 5.8627 -3.9530 -0.1814 50 1 5.5269 -1.5497 -0.8621 51 1 4.4042 -2.0781 0.4145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278184772.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:05 Heat of formation + Delta-G solvation = -6.274567 kcal Electronic energy + Delta-G solvation = -32634.794614 eV Core-core repulsion = 28535.675749 eV Total energy + Delta-G solvation = -4099.118866 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.19965 -40.86532 -39.13651 -37.87156 -36.76813 -34.77040 -33.97144 -33.08407 -32.05622 -31.80535 -31.14299 -28.70731 -28.25583 -26.93917 -24.86987 -23.78970 -23.70270 -22.14813 -21.47862 -20.87971 -20.34175 -19.06993 -18.67245 -18.23923 -18.10354 -17.52094 -16.81079 -16.67959 -16.57691 -15.90629 -15.62968 -15.34887 -15.25450 -15.17754 -14.76657 -14.59837 -14.50301 -14.29856 -14.18922 -14.08317 -13.84373 -13.45706 -13.17972 -13.07618 -12.92565 -12.87049 -12.61172 -12.53241 -12.40787 -12.13559 -12.06966 -11.96707 -11.84526 -11.73099 -11.59036 -11.43428 -11.35723 -11.09596 -10.92963 -10.61325 -10.51907 -10.07536 -9.79371 -8.63266 -7.84757 -5.29662 1.35905 1.46715 1.50503 1.57469 1.58525 1.65282 1.85797 2.35375 2.49928 2.53075 3.25225 3.33199 3.47966 3.52871 3.67004 3.71071 3.78776 3.84186 4.03533 4.09988 4.16590 4.29180 4.30603 4.34180 4.45870 4.51115 4.54285 4.69080 4.72370 4.78015 4.80794 4.83225 4.94899 4.96916 5.00372 5.02722 5.11116 5.16117 5.17253 5.21163 5.32852 5.38930 5.42536 5.58922 5.69310 5.78730 5.89916 6.13769 6.37156 6.44203 6.62387 7.09313 7.19565 7.27657 7.91138 8.40161 9.21272 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.003141 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.136516 B = 8912.455073 C = 9541.717617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.223 4.223 3 C 0.222 3.778 4 N -0.595 5.595 5 C 0.521 3.479 6 O -0.571 6.571 7 C -0.119 4.119 8 H 0.143 0.857 9 C -0.159 4.159 10 C 0.148 3.852 11 H 0.105 0.895 12 C -0.114 4.114 13 C -0.157 4.157 14 C 0.505 3.495 15 O -0.601 6.601 16 N -0.714 5.714 17 C 0.146 3.854 18 C -0.128 4.128 19 C 0.184 3.816 20 N -0.609 5.609 21 C -0.256 4.256 22 H 0.066 0.934 23 C -0.047 4.047 24 N -0.932 5.932 25 Si 0.957 3.043 26 H -0.268 1.268 27 H -0.296 1.296 28 H -0.293 1.293 29 C 0.144 3.856 30 C -0.131 4.131 31 H 0.238 0.762 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.037 0.963 35 H 0.103 0.897 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.406 0.594 42 H 0.115 0.885 43 H 0.045 0.955 44 H 0.051 0.949 45 H 0.010 0.990 46 H 0.050 0.950 47 H 0.248 0.752 48 H 0.031 0.969 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.165 14.410 -6.563 17.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.225 4.225 3 C 0.100 3.900 4 N -0.325 5.325 5 C 0.310 3.690 6 O -0.450 6.450 7 C -0.141 4.141 8 H 0.161 0.839 9 C -0.216 4.216 10 C 0.042 3.958 11 H 0.123 0.877 12 C -0.151 4.151 13 C -0.197 4.197 14 C 0.293 3.707 15 O -0.483 6.483 16 N -0.366 5.366 17 C 0.044 3.956 18 C -0.168 4.168 19 C 0.057 3.943 20 N -0.333 5.333 21 C -0.387 4.387 22 H 0.084 0.916 23 C -0.242 4.242 24 N -0.578 5.578 25 Si 0.786 3.214 26 H -0.192 1.192 27 H -0.223 1.223 28 H -0.220 1.220 29 C 0.018 3.982 30 C -0.171 4.171 31 H 0.254 0.746 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.056 0.944 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.245 0.755 42 H 0.132 0.868 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.028 0.972 46 H 0.068 0.932 47 H 0.057 0.943 48 H 0.049 0.951 49 H 0.076 0.924 50 H 0.110 0.890 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.523 15.047 -6.753 17.736 hybrid contribution -1.383 -0.774 1.390 2.108 sum 5.140 14.273 -5.363 16.090 Atomic orbital electron populations 1.25632 0.96920 1.00853 0.98386 1.24023 0.95850 1.00620 1.01960 1.18274 0.83149 1.02380 0.86225 1.48193 1.63849 1.09605 1.10894 1.21154 0.75922 0.85097 0.86779 1.90613 1.51988 1.18363 1.84039 1.21926 1.03054 0.98708 0.90432 0.83928 1.22176 0.97538 0.98483 1.03383 1.21649 0.85363 0.92047 0.96734 0.87681 1.22784 0.95571 1.05679 0.91092 1.22602 0.95822 1.00180 1.01099 1.21732 0.84958 0.81103 0.82901 1.90702 1.24585 1.58590 1.74468 1.46534 1.23457 1.47177 1.19425 1.21392 0.94519 0.77926 1.01766 1.22300 0.97110 0.96911 1.00471 1.20501 0.89491 0.91075 0.93219 1.44299 1.08196 1.30462 1.50338 1.19501 1.22479 0.93824 1.02865 0.91613 1.25687 1.01946 0.98796 0.97781 1.70129 1.35984 1.29870 1.21818 0.85361 0.77056 0.79146 0.79819 1.19194 1.22270 1.22010 1.21046 0.89154 0.89172 0.98799 1.22310 0.97553 0.97625 0.99594 0.74582 0.87278 0.87819 0.94410 0.87836 0.91886 0.87537 0.85831 0.86540 0.86925 0.75548 0.86764 0.93572 0.93058 0.97243 0.93190 0.94274 0.95062 0.92383 0.89037 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.45 19.25 74.32 1.43 -4.02 16 2 C -0.22 -6.48 12.60 31.12 0.39 -6.09 16 3 C 0.22 5.63 5.07 84.58 0.43 6.06 16 4 N -0.60 -14.45 2.36 -808.17 -1.91 -16.36 16 5 C 0.52 12.27 6.83 87.66 0.60 12.86 16 6 O -0.57 -16.34 14.16 -3.06 -0.04 -16.39 16 7 C -0.12 -1.93 1.68 -11.54 -0.02 -1.94 16 8 H 0.14 1.49 7.47 -2.39 -0.02 1.47 16 9 C -0.16 -2.93 7.13 71.98 0.51 -2.42 16 10 C 0.15 2.09 3.03 45.45 0.14 2.23 16 11 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 12 C -0.11 -0.89 6.22 31.70 0.20 -0.70 16 13 C -0.16 -2.16 6.05 30.64 0.19 -1.98 16 14 C 0.50 12.37 7.20 87.90 0.63 13.00 16 15 O -0.60 -21.11 18.03 -3.02 -0.05 -21.16 16 16 N -0.71 -15.51 4.87 -439.43 -2.14 -17.65 16 17 C 0.15 3.74 1.51 45.02 0.07 3.81 16 18 C -0.13 -4.30 4.37 30.67 0.13 -4.17 16 19 C 0.18 7.92 5.29 86.36 0.46 8.38 16 20 N -0.61 -27.10 2.99 -699.09 -2.09 -29.19 16 21 C -0.26 -13.06 9.59 84.03 0.81 -12.26 16 22 H 0.07 3.29 7.87 -2.91 -0.02 3.26 16 23 C -0.05 -2.46 4.97 84.86 0.42 -2.04 16 24 N -0.93 -52.19 11.11 21.65 0.24 -51.95 16 25 Si 0.96 43.14 29.58 68.60 2.03 45.17 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 28 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 29 C 0.14 4.84 6.52 86.36 0.56 5.40 16 30 C -0.13 -3.36 5.39 30.67 0.17 -3.19 16 31 H 0.24 4.80 7.80 -4.42 -0.03 4.77 16 32 H 0.11 2.62 6.55 -2.38 -0.02 2.60 16 33 H 0.10 2.52 7.55 -2.39 -0.02 2.50 16 34 H 0.04 0.88 6.55 -2.39 -0.02 0.86 16 35 H 0.10 1.30 5.72 -2.38 -0.01 1.29 16 36 H 0.06 1.41 4.51 -2.39 -0.01 1.40 16 37 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.12 0.38 7.54 -2.39 -0.02 0.36 16 39 H 0.12 1.45 6.14 -2.39 -0.01 1.44 16 40 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.41 10.47 7.71 -92.71 -0.72 9.76 16 42 H 0.11 2.57 4.34 -2.39 -0.01 2.56 16 43 H 0.05 1.69 7.20 -2.39 -0.02 1.67 16 44 H 0.05 1.72 7.52 -2.39 -0.02 1.70 16 45 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.05 2.58 6.03 -2.39 -0.01 2.57 16 47 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 48 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 49 H 0.06 1.95 7.93 -2.39 -0.02 1.93 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.06 1.57 6.89 -2.39 -0.02 1.55 16 Total: -1.00 -73.38 389.59 3.38 -69.99 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.24 Total: 24.61 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 7.11 Total: 12.94 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.90 Total: -115.15 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -0.10 Total: -37.55 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -73.38 3.38 -69.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278184772.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.716 kcal (2) G-P(sol) polarization free energy of solvation -73.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds