Wall clock time and date at job start Wed Apr 1 2020 04:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47226 * 197.05218 * 3 2 1 5 5 C 1.34786 * 119.99602 * 275.33745 * 4 3 2 6 6 O 1.21280 * 120.00080 * 4.64538 * 5 4 3 7 7 C 1.50699 * 119.99559 * 184.65031 * 5 4 3 8 8 H 1.08999 * 109.47338 * 321.15026 * 7 5 4 9 9 C 1.53001 * 109.47293 * 81.15403 * 7 5 4 10 10 C 1.53005 * 109.46918 * 201.15233 * 7 5 4 11 11 H 1.08998 * 110.21746 * 300.70061 * 10 7 5 12 12 C 1.54479 * 110.24571 * 178.77178 * 10 7 5 13 13 C 1.54860 * 101.65762 * 266.38805 * 12 10 7 14 14 C 1.51283 * 104.21270 * 335.19444 * 13 12 10 15 15 O 1.21279 * 124.94279 * 196.28818 * 14 13 12 16 16 N 1.34414 * 110.11363 * 16.26267 * 14 13 12 17 17 C 1.46491 * 120.00344 * 95.33305 * 4 3 2 18 18 C 1.53045 * 109.45804 * 57.94336 * 17 4 3 19 19 C 1.53197 * 109.31289 * 178.62472 * 18 17 4 20 20 N 1.46927 * 108.76965 * 54.64022 * 19 18 17 21 21 C 1.36936 * 120.62861 * 126.36933 * 20 19 18 22 22 H 1.07992 * 120.00000 * 332.04833 * 21 20 19 23 23 C 1.38817 * 120.00014 * 152.05198 * 21 20 19 24 24 N 1.31624 * 119.99804 * 348.46059 * 23 21 20 25 25 Si 1.86796 * 120.00074 * 168.45633 * 23 21 20 26 26 H 1.48500 * 109.47234 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47002 * 299.99800 * 25 23 21 28 28 H 1.48496 * 109.47034 * 59.99880 * 25 23 21 29 29 C 1.46927 * 118.73839 * 306.63667 * 20 19 18 30 30 C 1.52763 * 109.00543 * 53.31554 * 29 20 19 31 31 H 4.40645 * 5.51384 * 180.02562 * 4 1 2 32 32 H 1.09003 * 109.46698 * 77.05107 * 3 2 1 33 33 H 1.08998 * 109.47366 * 317.05577 * 3 2 1 34 34 H 1.08994 * 109.46856 * 65.61865 * 9 7 5 35 35 H 1.08994 * 109.46872 * 185.62156 * 9 7 5 36 36 H 1.08999 * 109.46537 * 305.61952 * 9 7 5 37 37 H 1.08995 * 110.97069 * 24.53372 * 12 10 7 38 38 H 1.09000 * 110.96700 * 148.29767 * 12 10 7 39 39 H 1.09001 * 110.47240 * 216.51416 * 13 12 10 40 40 H 1.09008 * 110.48826 * 93.88223 * 13 12 10 41 41 H 0.97003 * 124.35232 * 180.42996 * 16 14 13 42 42 H 1.09001 * 109.46486 * 177.91807 * 17 4 3 43 43 H 1.09005 * 109.49194 * 58.67749 * 18 17 4 44 44 H 1.08995 * 109.52346 * 298.59905 * 18 17 4 45 45 H 1.08997 * 109.59105 * 294.85349 * 19 18 17 46 46 H 1.08998 * 109.69943 * 174.49236 * 19 18 17 47 47 H 0.97004 * 119.99734 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.58513 * 173.15065 * 29 20 19 49 49 H 1.08996 * 109.58739 * 293.57329 * 29 20 19 50 50 H 1.09007 * 109.56070 * 185.55071 * 30 29 20 51 51 H 1.08996 * 109.36047 * 65.49850 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3213 0.4050 5 6 3.2556 2.3042 -0.5092 6 8 2.8827 2.1220 -1.6488 7 6 3.8552 3.6294 -0.1154 8 1 3.5143 3.8999 0.8840 9 6 5.3814 3.5207 -0.1216 10 6 3.4164 4.7041 -1.1121 11 1 3.7407 4.4394 -2.1185 12 6 3.9967 6.0774 -0.7074 13 6 2.8406 6.6694 0.1359 14 6 1.6065 5.9593 -0.3754 15 8 0.4658 6.3234 -0.1829 16 7 1.9583 4.8666 -1.0746 17 6 3.4890 1.5738 1.8036 18 6 4.5736 0.5863 2.2403 19 6 4.9670 0.8754 3.6924 20 7 3.7564 0.8488 4.5245 21 6 3.6910 0.0513 5.6358 22 1 4.2724 -0.8575 5.6832 23 6 2.8772 0.4110 6.7013 24 7 2.3481 1.6154 6.7480 25 14 2.5330 -0.8140 8.0688 26 1 1.6425 -0.1898 9.0801 27 1 1.8707 -2.0160 7.5015 28 1 3.8116 -1.2104 8.7117 29 6 2.6151 1.6896 4.1382 30 6 2.2502 1.3956 2.6842 31 1 -1.0502 -0.0004 0.0001 32 1 3.0094 -0.2295 -1.0016 33 1 3.0097 -0.7514 0.7001 34 1 5.7292 3.3490 -1.1402 35 1 5.8131 4.4465 0.2586 36 1 5.6889 2.6891 0.5125 37 1 4.8982 5.9583 -0.1066 38 1 4.1936 6.6919 -1.5860 39 1 2.7589 7.7436 -0.0300 40 1 2.9924 6.4563 1.1941 41 1 1.3293 4.2630 -1.5001 42 1 3.8632 2.5925 1.9051 43 1 5.4471 0.6977 1.5977 44 1 4.1921 -0.4317 2.1625 45 1 5.4326 1.8589 3.7561 46 1 5.6671 0.1164 4.0415 47 1 1.7798 1.8669 7.4928 48 1 1.7628 1.4659 4.7798 49 1 2.8850 2.7408 4.2389 50 1 1.4697 2.0830 2.3576 51 1 1.8900 0.3701 2.6023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278184776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:17 Heat of formation + Delta-G solvation = 7.894135 kcal Electronic energy + Delta-G solvation = -32625.671287 eV Core-core repulsion = 28527.166822 eV Total energy + Delta-G solvation = -4098.504465 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.09190 -39.81117 -37.82395 -36.82099 -35.38518 -33.68448 -32.78589 -31.99427 -31.36401 -30.30543 -29.54999 -27.64992 -26.89126 -25.25443 -24.33529 -22.34387 -22.27193 -21.27428 -20.59162 -19.47321 -19.20346 -17.97864 -17.73703 -17.13195 -16.93585 -16.26129 -15.62890 -15.52478 -15.06620 -14.84533 -14.36241 -14.08290 -13.96924 -13.71472 -13.70219 -13.50369 -13.37233 -13.19961 -13.11807 -12.88328 -12.74487 -12.56310 -12.22222 -12.04957 -11.84787 -11.60697 -11.46832 -11.23782 -11.06996 -10.87023 -10.79694 -10.61730 -10.44519 -10.35060 -10.18187 -9.96229 -9.92642 -9.85678 -9.83569 -9.50043 -9.21470 -8.71028 -8.47778 -6.77120 -5.84706 -3.31207 2.46302 2.53985 2.63325 3.00383 3.27198 3.33835 3.40320 3.40400 3.44657 4.07745 4.24564 4.33974 4.42643 4.51211 4.54017 4.75547 4.86607 4.95504 5.02599 5.11261 5.29484 5.30635 5.35385 5.40271 5.40886 5.43633 5.48871 5.55202 5.57558 5.60339 5.68092 5.79949 5.89660 5.92623 6.04658 6.09640 6.23933 6.31384 6.45198 6.53098 6.61738 6.65180 6.72260 6.80565 6.98478 7.28891 7.42532 7.62796 7.71593 7.75546 8.13182 8.19277 8.38648 9.14012 9.75983 10.30600 11.22851 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.003443 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.211905 B = 8130.004235 C = 8684.592113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C 0.225 3.775 4 N -0.598 5.598 5 C 0.525 3.475 6 O -0.547 6.547 7 C -0.128 4.128 8 H 0.102 0.898 9 C -0.143 4.143 10 C 0.150 3.850 11 H 0.099 0.901 12 C -0.131 4.131 13 C -0.159 4.159 14 C 0.517 3.483 15 O -0.537 6.537 16 N -0.722 5.722 17 C 0.138 3.862 18 C -0.143 4.143 19 C 0.148 3.852 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.066 0.934 23 C 0.004 3.996 24 N -0.905 5.905 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.284 1.284 28 H -0.282 1.282 29 C 0.171 3.829 30 C -0.146 4.146 31 H 0.214 0.786 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.413 0.587 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.255 0.745 48 H 0.099 0.901 49 H 0.017 0.983 50 H 0.049 0.951 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 4.881 -15.804 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.195 4.195 3 C 0.103 3.897 4 N -0.329 5.329 5 C 0.313 3.687 6 O -0.425 6.425 7 C -0.150 4.150 8 H 0.120 0.880 9 C -0.201 4.201 10 C 0.043 3.957 11 H 0.117 0.883 12 C -0.168 4.168 13 C -0.199 4.199 14 C 0.303 3.697 15 O -0.414 6.414 16 N -0.376 5.376 17 C 0.036 3.964 18 C -0.183 4.183 19 C 0.021 3.979 20 N -0.314 5.314 21 C -0.383 4.383 22 H 0.083 0.917 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.210 1.210 28 H -0.208 1.208 29 C 0.045 3.955 30 C -0.187 4.187 31 H 0.231 0.769 32 H 0.115 0.885 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.252 0.748 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.117 0.883 49 H 0.035 0.965 50 H 0.068 0.932 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.882 5.131 -16.088 17.881 hybrid contribution -0.806 -1.042 0.704 1.493 sum 5.076 4.090 -15.384 16.708 Atomic orbital electron populations 1.24858 0.95891 0.99080 1.01484 1.23443 0.94851 1.01227 0.99940 1.18221 0.83877 0.85595 1.02032 1.48313 1.63825 1.11053 1.09680 1.20512 0.77818 0.85444 0.84939 1.90662 1.49986 1.81817 1.20049 1.21855 0.98258 0.93048 1.01876 0.88013 1.21813 0.91445 1.03610 1.03270 1.21468 0.80245 0.94168 0.99778 0.88335 1.22798 0.98538 0.94542 1.00946 1.22419 0.93397 1.01952 1.02163 1.20952 0.90301 0.81149 0.77271 1.90758 1.22641 1.69031 1.58995 1.46331 1.08353 1.28017 1.54940 1.21479 0.96664 1.00088 0.78170 1.22460 0.97007 0.99307 0.99496 1.20859 0.90216 0.98500 0.88331 1.44046 1.09551 1.50372 1.27434 1.19147 1.25786 1.00712 0.92686 0.91658 1.25073 1.01267 0.95870 0.97248 1.69938 1.35899 1.17391 1.31777 0.86334 0.77972 0.80580 0.81640 1.21560 1.21023 1.20847 1.20779 0.92905 0.92614 0.89237 1.22532 0.95435 1.01643 0.99051 0.76914 0.88475 0.87747 0.91589 0.90675 0.91037 0.88382 0.89522 0.87976 0.87457 0.74774 0.89196 0.92523 0.91743 0.96231 0.92322 0.93445 0.88311 0.96466 0.93230 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 19.25 29.55 0.57 -2.22 16 2 C -0.19 -2.93 12.54 -37.12 -0.47 -3.39 16 3 C 0.22 3.03 5.15 -6.83 -0.04 3.00 16 4 N -0.60 -8.11 2.36 -169.38 -0.40 -8.51 16 5 C 0.52 6.93 6.48 -10.98 -0.07 6.86 16 6 O -0.55 -8.44 15.42 5.56 0.09 -8.35 16 7 C -0.13 -1.29 1.64 -91.77 -0.15 -1.44 16 8 H 0.10 1.12 6.37 -51.93 -0.33 0.79 16 9 C -0.14 -1.10 8.62 37.16 0.32 -0.78 16 10 C 0.15 1.38 2.57 -67.01 -0.17 1.20 16 11 H 0.10 0.89 7.89 -51.93 -0.41 0.48 16 12 C -0.13 -0.85 6.54 -24.97 -0.16 -1.02 16 13 C -0.16 -1.41 6.86 -26.62 -0.18 -1.59 16 14 C 0.52 6.86 8.43 -10.86 -0.09 6.77 16 15 O -0.54 -9.59 18.03 5.56 0.10 -9.49 16 16 N -0.72 -8.59 5.46 -52.76 -0.29 -8.87 16 17 C 0.14 2.01 1.91 -67.89 -0.13 1.88 16 18 C -0.14 -2.07 5.28 -26.61 -0.14 -2.21 16 19 C 0.15 2.70 6.52 -3.71 -0.02 2.67 16 20 N -0.59 -13.59 3.01 -172.58 -0.52 -14.11 16 21 C -0.25 -6.57 9.61 -15.06 -0.14 -6.71 16 22 H 0.07 1.66 7.85 -52.49 -0.41 1.24 16 23 C 0.00 0.10 5.06 -17.43 -0.09 0.01 16 24 N -0.91 -25.26 10.86 55.49 0.60 -24.65 16 25 Si 0.90 21.05 29.57 -169.99 -5.03 16.03 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 29 C 0.17 3.82 5.26 -3.93 -0.02 3.80 16 30 C -0.15 -2.66 4.91 -26.83 -0.13 -2.79 16 31 H 0.21 2.35 7.80 -54.08 -0.42 1.93 16 32 H 0.10 1.23 7.66 -51.93 -0.40 0.84 16 33 H 0.10 1.32 6.35 -51.93 -0.33 0.99 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.42 6.38 -51.93 -0.33 0.09 16 36 H 0.07 0.61 7.08 -51.93 -0.37 0.24 16 37 H 0.10 0.47 5.97 -51.93 -0.31 0.16 16 38 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.11 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.41 5.39 8.72 -40.82 -0.36 5.04 16 42 H 0.09 1.25 5.05 -51.93 -0.26 0.98 16 43 H 0.06 0.68 7.69 -51.93 -0.40 0.28 16 44 H 0.06 0.98 6.65 -51.93 -0.35 0.64 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 1.06 7.93 -51.93 -0.41 0.64 16 47 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.10 2.57 5.87 -51.93 -0.30 2.26 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.06 1.17 7.29 -51.93 -0.38 0.79 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -32.82 400.53 -8.39 -41.22 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.86 Total: 6.67 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.12 Total: 4.05 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.60 Total: -56.16 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 0.19 Total: -17.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.82 -8.39 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278184776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.113 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds