Wall clock time and date at job start Wed Apr 1 2020 04:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47226 * 197.05218 * 3 2 1 5 5 C 1.34786 * 119.99602 * 275.33745 * 4 3 2 6 6 O 1.21280 * 120.00080 * 4.64538 * 5 4 3 7 7 C 1.50699 * 119.99559 * 184.65031 * 5 4 3 8 8 H 1.08999 * 109.47338 * 321.15026 * 7 5 4 9 9 C 1.53001 * 109.47293 * 81.15403 * 7 5 4 10 10 C 1.53005 * 109.46918 * 201.15233 * 7 5 4 11 11 H 1.08998 * 110.21746 * 300.70061 * 10 7 5 12 12 C 1.54479 * 110.24571 * 178.77178 * 10 7 5 13 13 C 1.54860 * 101.65762 * 266.38805 * 12 10 7 14 14 C 1.51283 * 104.21270 * 335.19444 * 13 12 10 15 15 O 1.21279 * 124.94279 * 196.28818 * 14 13 12 16 16 N 1.34414 * 110.11363 * 16.26267 * 14 13 12 17 17 C 1.46491 * 120.00344 * 95.33305 * 4 3 2 18 18 C 1.53045 * 109.45804 * 57.94336 * 17 4 3 19 19 C 1.53197 * 109.31289 * 178.62472 * 18 17 4 20 20 N 1.46927 * 108.76965 * 54.64022 * 19 18 17 21 21 C 1.36936 * 120.62861 * 126.36933 * 20 19 18 22 22 H 1.07992 * 120.00000 * 332.04833 * 21 20 19 23 23 C 1.38817 * 120.00014 * 152.05198 * 21 20 19 24 24 N 1.31624 * 119.99804 * 348.46059 * 23 21 20 25 25 Si 1.86796 * 120.00074 * 168.45633 * 23 21 20 26 26 H 1.48500 * 109.47234 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47002 * 299.99800 * 25 23 21 28 28 H 1.48496 * 109.47034 * 59.99880 * 25 23 21 29 29 C 1.46927 * 118.73839 * 306.63667 * 20 19 18 30 30 C 1.52763 * 109.00543 * 53.31554 * 29 20 19 31 31 H 4.40645 * 5.51384 * 180.02562 * 4 1 2 32 32 H 1.09003 * 109.46698 * 77.05107 * 3 2 1 33 33 H 1.08998 * 109.47366 * 317.05577 * 3 2 1 34 34 H 1.08994 * 109.46856 * 65.61865 * 9 7 5 35 35 H 1.08994 * 109.46872 * 185.62156 * 9 7 5 36 36 H 1.08999 * 109.46537 * 305.61952 * 9 7 5 37 37 H 1.08995 * 110.97069 * 24.53372 * 12 10 7 38 38 H 1.09000 * 110.96700 * 148.29767 * 12 10 7 39 39 H 1.09001 * 110.47240 * 216.51416 * 13 12 10 40 40 H 1.09008 * 110.48826 * 93.88223 * 13 12 10 41 41 H 0.97003 * 124.35232 * 180.42996 * 16 14 13 42 42 H 1.09001 * 109.46486 * 177.91807 * 17 4 3 43 43 H 1.09005 * 109.49194 * 58.67749 * 18 17 4 44 44 H 1.08995 * 109.52346 * 298.59905 * 18 17 4 45 45 H 1.08997 * 109.59105 * 294.85349 * 19 18 17 46 46 H 1.08998 * 109.69943 * 174.49236 * 19 18 17 47 47 H 0.97004 * 119.99734 * 180.02562 * 24 23 21 48 48 H 1.08998 * 109.58513 * 173.15065 * 29 20 19 49 49 H 1.08996 * 109.58739 * 293.57329 * 29 20 19 50 50 H 1.09007 * 109.56070 * 185.55071 * 30 29 20 51 51 H 1.08996 * 109.36047 * 65.49850 * 30 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.3213 0.4050 5 6 3.2556 2.3042 -0.5092 6 8 2.8827 2.1220 -1.6488 7 6 3.8552 3.6294 -0.1154 8 1 3.5143 3.8999 0.8840 9 6 5.3814 3.5207 -0.1216 10 6 3.4164 4.7041 -1.1121 11 1 3.7407 4.4394 -2.1185 12 6 3.9967 6.0774 -0.7074 13 6 2.8406 6.6694 0.1359 14 6 1.6065 5.9593 -0.3754 15 8 0.4658 6.3234 -0.1829 16 7 1.9583 4.8666 -1.0746 17 6 3.4890 1.5738 1.8036 18 6 4.5736 0.5863 2.2403 19 6 4.9670 0.8754 3.6924 20 7 3.7564 0.8488 4.5245 21 6 3.6910 0.0513 5.6358 22 1 4.2724 -0.8575 5.6832 23 6 2.8772 0.4110 6.7013 24 7 2.3481 1.6154 6.7480 25 14 2.5330 -0.8140 8.0688 26 1 1.6425 -0.1898 9.0801 27 1 1.8707 -2.0160 7.5015 28 1 3.8116 -1.2104 8.7117 29 6 2.6151 1.6896 4.1382 30 6 2.2502 1.3956 2.6842 31 1 -1.0502 -0.0004 0.0001 32 1 3.0094 -0.2295 -1.0016 33 1 3.0097 -0.7514 0.7001 34 1 5.7292 3.3490 -1.1402 35 1 5.8131 4.4465 0.2586 36 1 5.6889 2.6891 0.5125 37 1 4.8982 5.9583 -0.1066 38 1 4.1936 6.6919 -1.5860 39 1 2.7589 7.7436 -0.0300 40 1 2.9924 6.4563 1.1941 41 1 1.3293 4.2630 -1.5001 42 1 3.8632 2.5925 1.9051 43 1 5.4471 0.6977 1.5977 44 1 4.1921 -0.4317 2.1625 45 1 5.4326 1.8589 3.7561 46 1 5.6671 0.1164 4.0415 47 1 1.7798 1.8669 7.4928 48 1 1.7628 1.4659 4.7798 49 1 2.8850 2.7408 4.2389 50 1 1.4697 2.0830 2.3576 51 1 1.8900 0.3701 2.6023 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278184776.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:16 Heat of formation + Delta-G solvation = -13.217078 kcal Electronic energy + Delta-G solvation = -32626.586738 eV Core-core repulsion = 28527.166822 eV Total energy + Delta-G solvation = -4099.419916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.04421 -40.87619 -39.18994 -37.87272 -36.77004 -34.80859 -34.09858 -33.31345 -32.10256 -31.86255 -31.15061 -28.70207 -27.64278 -26.95452 -25.17676 -23.86627 -23.77564 -22.10235 -21.48508 -20.95669 -20.21081 -19.14490 -18.74159 -18.64344 -18.08537 -17.37546 -16.86324 -16.54685 -16.49010 -16.04436 -15.64453 -15.40798 -15.25858 -15.00095 -14.78134 -14.61386 -14.50383 -14.33738 -14.20701 -14.07561 -13.85144 -13.71099 -13.20722 -13.06211 -12.87623 -12.77686 -12.64846 -12.51343 -12.43874 -12.22652 -12.12045 -12.03476 -11.87431 -11.69041 -11.60346 -11.47118 -11.40210 -11.10100 -10.96274 -10.63950 -10.52861 -10.16802 -9.82305 -8.65520 -7.84258 -5.31471 1.36092 1.47943 1.49942 1.53623 1.55667 1.59891 1.85218 2.34222 2.38327 2.52224 3.23148 3.32888 3.47067 3.50737 3.63898 3.66552 3.75737 3.78577 4.04727 4.10571 4.16584 4.26740 4.30809 4.37287 4.43629 4.47843 4.50858 4.68272 4.74273 4.78963 4.84475 4.88403 4.93230 4.96946 5.00049 5.01721 5.11048 5.13877 5.17628 5.22160 5.35874 5.39138 5.45330 5.58856 5.66163 5.77514 5.79187 6.03618 6.34307 6.43053 6.62016 7.08088 7.17862 7.17894 7.89479 8.38280 9.20861 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011425 B = 0.003443 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.211905 B = 8130.004235 C = 8684.592113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.223 4.223 3 C 0.221 3.779 4 N -0.597 5.597 5 C 0.521 3.479 6 O -0.570 6.570 7 C -0.124 4.124 8 H 0.094 0.906 9 C -0.141 4.141 10 C 0.146 3.854 11 H 0.105 0.895 12 C -0.115 4.115 13 C -0.154 4.154 14 C 0.504 3.496 15 O -0.597 6.597 16 N -0.723 5.723 17 C 0.151 3.849 18 C -0.128 4.128 19 C 0.144 3.856 20 N -0.609 5.609 21 C -0.257 4.257 22 H 0.070 0.930 23 C -0.050 4.050 24 N -0.936 5.936 25 Si 0.962 3.038 26 H -0.298 1.298 27 H -0.282 1.282 28 H -0.273 1.273 29 C 0.181 3.819 30 C -0.129 4.129 31 H 0.237 0.763 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.126 0.874 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.402 0.598 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.030 0.970 46 H 0.061 0.939 47 H 0.248 0.752 48 H 0.056 0.944 49 H 0.003 0.997 50 H 0.041 0.959 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.580 5.089 -17.121 20.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.224 4.224 3 C 0.100 3.900 4 N -0.327 5.327 5 C 0.311 3.689 6 O -0.449 6.449 7 C -0.147 4.147 8 H 0.112 0.888 9 C -0.198 4.198 10 C 0.041 3.959 11 H 0.123 0.877 12 C -0.152 4.152 13 C -0.194 4.194 14 C 0.292 3.708 15 O -0.478 6.478 16 N -0.375 5.375 17 C 0.049 3.951 18 C -0.168 4.168 19 C 0.018 3.982 20 N -0.332 5.332 21 C -0.387 4.387 22 H 0.087 0.913 23 C -0.245 4.245 24 N -0.583 5.583 25 Si 0.790 3.210 26 H -0.224 1.224 27 H -0.208 1.208 28 H -0.199 1.199 29 C 0.054 3.946 30 C -0.169 4.169 31 H 0.253 0.747 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.240 0.760 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.021 0.979 50 H 0.060 0.940 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.854 5.312 -17.441 20.269 hybrid contribution -1.735 -1.158 1.035 2.328 sum 7.119 4.153 -16.407 18.361 Atomic orbital electron populations 1.25633 0.96953 0.98479 1.00965 1.24057 0.95929 1.01866 1.00526 1.18359 0.83131 0.85821 1.02737 1.48235 1.63926 1.11396 1.09105 1.21131 0.77169 0.86182 0.84440 1.90656 1.50904 1.82309 1.21036 1.21927 1.00127 0.91160 1.01448 0.88753 1.21874 0.88915 1.05022 1.04034 1.21728 0.78533 0.95662 1.00022 0.87729 1.22887 0.98173 0.92411 1.01718 1.22476 0.91819 1.02432 1.02646 1.21821 0.90830 0.81429 0.76717 1.90714 1.25269 1.70589 1.61237 1.46553 1.09719 1.27268 1.53952 1.21242 0.94689 1.01109 0.78089 1.22293 0.98229 0.98748 0.97540 1.21059 0.88467 0.99182 0.89486 1.44267 1.11400 1.50064 1.27508 1.19497 1.24880 1.01079 0.93253 0.91273 1.25743 1.01947 0.97258 0.99532 1.70108 1.36957 1.19035 1.32165 0.85425 0.77790 0.78597 0.79144 1.22427 1.20828 1.19881 1.20455 0.91539 0.91718 0.90855 1.22233 0.97062 1.00359 0.97232 0.74662 0.87609 0.87010 0.90709 0.87824 0.91443 0.85556 0.87381 0.86508 0.86911 0.76043 0.87716 0.88655 0.92280 0.95156 0.92052 0.94302 0.92537 0.97902 0.94030 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.77 19.25 74.32 1.43 -4.34 16 2 C -0.22 -6.69 12.54 31.13 0.39 -6.30 16 3 C 0.22 5.72 5.15 84.57 0.44 6.16 16 4 N -0.60 -15.16 2.36 -808.17 -1.91 -17.07 16 5 C 0.52 12.76 6.48 87.66 0.57 13.33 16 6 O -0.57 -16.78 15.42 -3.03 -0.05 -16.83 16 7 C -0.12 -2.15 1.64 -11.54 -0.02 -2.17 16 8 H 0.09 1.82 6.37 -2.39 -0.02 1.80 16 9 C -0.14 -1.50 8.62 71.98 0.62 -0.88 16 10 C 0.15 2.29 2.57 45.44 0.12 2.40 16 11 H 0.10 1.58 7.89 -2.39 -0.02 1.56 16 12 C -0.11 -1.02 6.54 31.73 0.21 -0.81 16 13 C -0.15 -2.36 6.86 30.67 0.21 -2.15 16 14 C 0.50 13.27 8.43 87.90 0.74 14.01 16 15 O -0.60 -22.12 18.03 -3.03 -0.05 -22.18 16 16 N -0.72 -16.77 5.46 -439.43 -2.40 -19.17 16 17 C 0.15 4.14 1.91 45.02 0.09 4.23 16 18 C -0.13 -3.37 5.28 30.68 0.16 -3.21 16 19 C 0.14 4.93 6.52 86.36 0.56 5.50 16 20 N -0.61 -27.88 3.01 -699.93 -2.10 -29.99 16 21 C -0.26 -13.31 9.61 84.03 0.81 -12.51 16 22 H 0.07 3.46 7.85 -2.91 -0.02 3.44 16 23 C -0.05 -2.68 5.06 84.86 0.43 -2.26 16 24 N -0.94 -53.82 10.86 21.65 0.24 -53.59 16 25 Si 0.96 43.83 29.57 68.60 2.03 45.86 16 26 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 29 C 0.18 8.26 5.26 86.22 0.45 8.72 16 30 C -0.13 -4.69 4.91 30.53 0.15 -4.54 16 31 H 0.24 5.10 7.80 -4.41 -0.03 5.07 16 32 H 0.11 2.54 7.66 -2.39 -0.02 2.52 16 33 H 0.11 2.68 6.35 -2.39 -0.02 2.67 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.10 0.55 6.38 -2.39 -0.02 0.53 16 36 H 0.07 0.81 7.08 -2.39 -0.02 0.80 16 37 H 0.13 0.48 5.97 -2.39 -0.01 0.46 16 38 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.40 10.70 8.72 -92.71 -0.81 9.89 16 42 H 0.11 2.62 5.05 -2.39 -0.01 2.61 16 43 H 0.10 1.85 7.69 -2.38 -0.02 1.83 16 44 H 0.06 1.65 6.65 -2.39 -0.02 1.64 16 45 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 2.07 7.93 -2.39 -0.02 2.05 16 47 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 48 H 0.06 3.07 5.87 -2.39 -0.01 3.06 16 49 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 50 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 51 H 0.05 1.82 7.29 -2.39 -0.02 1.80 16 Total: -1.00 -75.31 400.53 3.24 -72.07 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.14 Total: 25.71 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 7.35 Total: 15.18 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -6.18 Total: -119.81 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.10 Total: -39.01 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -75.31 3.24 -72.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278184776.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.853 kcal (2) G-P(sol) polarization free energy of solvation -75.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds