Wall clock time and date at job start Wed Apr 1 2020 04:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47292 * 2 1 4 4 O 1.42897 * 109.47248 * 120.00146 * 2 1 3 5 5 C 1.35430 * 116.99829 * 89.99688 * 4 2 1 6 6 N 1.32234 * 119.80359 * 0.24933 * 5 4 2 7 7 C 1.31886 * 121.79976 * 180.28889 * 6 5 4 8 8 C 1.38353 * 121.18879 * 359.74747 * 7 6 5 9 9 C 1.38336 * 119.45466 * 359.97438 * 8 7 6 10 10 C 1.39993 * 118.35297 * 0.02562 * 9 8 7 11 11 C 1.47522 * 120.59629 * 180.02562 * 10 9 8 12 12 O 1.21594 * 119.99580 * 225.87266 * 11 10 9 13 13 N 1.34776 * 120.00324 * 45.87669 * 11 10 9 14 14 C 1.47025 * 125.64576 * 355.18522 * 13 11 10 15 15 C 1.54374 * 107.28475 * 178.87412 * 14 13 11 16 16 C 1.55158 * 102.92306 * 337.86287 * 15 14 13 17 17 H 1.08994 * 111.00377 * 277.36341 * 16 15 14 18 18 C 1.52998 * 111.00198 * 153.54466 * 16 15 14 19 19 H 1.09002 * 109.47199 * 63.18300 * 18 16 15 20 20 C 1.52997 * 109.47256 * 303.18411 * 18 16 15 21 21 N 1.46499 * 109.47098 * 183.18204 * 18 16 15 22 22 C 1.36930 * 120.00176 * 205.27848 * 21 18 16 23 23 H 1.07996 * 120.00301 * 359.72435 * 22 21 18 24 24 C 1.38815 * 120.00040 * 179.72425 * 22 21 18 25 25 N 1.31611 * 120.00360 * 359.97438 * 24 22 21 26 26 Si 1.86807 * 119.99950 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47094 * 59.99902 * 26 24 22 28 28 H 1.48497 * 109.47116 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47107 * 300.00041 * 26 24 22 30 30 C 1.47424 * 125.64765 * 175.14882 * 13 11 10 31 31 H 1.09001 * 109.46961 * 299.99881 * 1 2 3 32 32 H 1.09005 * 109.47336 * 59.99762 * 1 2 3 33 33 H 1.09000 * 109.47408 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46961 * 240.00119 * 2 1 3 35 35 H 1.08999 * 109.47135 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47231 * 299.99948 * 3 2 1 37 37 H 1.09001 * 109.47020 * 60.00155 * 3 2 1 38 38 H 1.07998 * 119.40610 * 179.72678 * 7 6 5 39 39 H 1.07992 * 120.27338 * 180.02562 * 8 7 6 40 40 H 1.08005 * 120.82629 * 179.97438 * 9 8 7 41 41 H 1.08991 * 109.88764 * 298.32658 * 14 13 11 42 42 H 1.09000 * 109.88056 * 59.34178 * 14 13 11 43 43 H 1.09003 * 110.75145 * 219.49462 * 15 14 13 44 44 H 1.08996 * 110.70190 * 96.21296 * 15 14 13 45 45 H 1.08999 * 109.47245 * 59.99960 * 20 18 16 46 46 H 1.09002 * 109.46891 * 180.02562 * 20 18 16 47 47 H 1.09002 * 109.46810 * 299.99513 * 20 18 16 48 48 H 0.97001 * 119.99879 * 25.00143 * 21 18 16 49 49 H 0.96999 * 120.00448 * 179.97438 * 25 24 22 50 50 H 1.09007 * 110.36401 * 85.33105 * 30 13 11 51 51 H 1.08993 * 110.46156 * 323.05163 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2112 -2.0085 1.0653 6 7 1.9745 -2.6246 -0.0805 7 6 2.1551 -3.9234 -0.2215 8 6 2.6079 -4.7020 0.8287 9 6 2.8769 -4.1084 2.0489 10 6 2.6778 -2.7284 2.1752 11 6 2.9496 -2.0445 3.4538 12 8 2.1471 -1.2468 3.8990 13 7 4.0873 -2.3037 4.1282 14 6 5.0915 -3.3121 3.7589 15 6 6.2278 -3.2309 4.8008 16 6 6.0704 -1.7980 5.3748 17 1 6.5544 -1.0638 4.7308 18 6 6.6161 -1.7160 6.8018 19 1 7.6862 -1.9230 6.7941 20 6 5.9037 -2.7464 7.6803 21 7 6.3825 -0.3726 7.3375 22 6 7.1882 0.1185 8.3298 23 1 7.9932 -0.4862 8.7206 24 6 6.9704 1.3936 8.8334 25 7 5.9898 2.1308 8.3568 26 14 8.0692 2.0633 10.1876 27 1 9.4751 2.1011 9.7110 28 1 7.6316 3.4361 10.5465 29 1 7.9747 1.1851 11.3813 30 6 4.5313 -1.6225 5.3579 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9562 0.8900 38 1 1.9454 -4.3877 -1.1738 39 1 2.7510 -5.7642 0.6968 40 1 3.2309 -4.6951 2.8838 41 1 4.6431 -4.3054 3.7757 42 1 5.4826 -3.0988 2.7641 43 1 7.1998 -3.3500 4.3221 44 1 6.0877 -3.9772 5.5827 45 1 6.0775 -3.7459 7.2817 46 1 6.2922 -2.6876 8.6970 47 1 4.8336 -2.5393 7.6881 48 1 5.6595 0.1705 6.9865 49 1 5.8374 3.0216 8.7090 50 1 4.0862 -2.0937 6.2344 51 1 4.2704 -0.5649 5.3230 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279045963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:14 Heat of formation + Delta-G solvation = -16.651323 kcal Electronic energy + Delta-G solvation = -31228.941158 eV Core-core repulsion = 27129.372322 eV Total energy + Delta-G solvation = -4099.568836 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.17972 -39.73144 -38.43064 -37.68913 -35.14147 -33.46299 -33.14607 -32.28051 -30.74468 -30.26394 -28.72938 -27.68710 -27.43167 -25.31072 -24.34240 -23.79484 -23.14606 -21.76236 -21.33184 -19.97730 -18.81988 -18.58579 -17.50466 -17.17845 -16.98952 -16.01316 -15.94117 -15.69216 -15.38456 -14.72131 -14.61607 -14.42730 -14.00873 -13.91873 -13.66721 -13.56678 -13.31843 -13.26353 -12.98818 -12.67188 -12.53756 -12.45480 -12.43889 -12.15569 -12.12288 -12.01937 -11.58576 -11.14446 -11.09117 -10.97481 -10.89744 -10.82278 -10.56602 -10.29574 -10.29318 -10.21534 -10.16886 -9.86292 -9.61560 -9.57089 -8.88799 -8.76649 -8.42334 -6.94380 -5.72611 -3.02280 0.54942 0.96101 2.69809 2.82306 3.03493 3.45834 3.50113 3.51638 3.51662 3.93019 4.39495 4.41635 4.60006 4.65890 4.68203 4.70933 4.79009 4.81334 4.88479 5.02070 5.04013 5.19823 5.36419 5.37751 5.41041 5.52923 5.58107 5.60093 5.61644 5.64672 5.66574 5.74030 5.78915 5.82091 5.94859 5.96077 6.00749 6.08565 6.10942 6.18146 6.26815 6.34766 6.49801 6.55293 6.71776 6.84642 7.07348 7.12491 7.47318 7.63422 7.71998 8.26609 8.45185 9.56207 10.13588 10.47876 11.49668 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.002641 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.025994 B =10601.373849 C =12195.698016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 C -0.152 4.152 4 O -0.278 6.278 5 C 0.370 3.630 6 N -0.543 5.543 7 C 0.158 3.842 8 C -0.220 4.220 9 C -0.014 4.014 10 C -0.196 4.196 11 C 0.580 3.420 12 O -0.516 6.516 13 N -0.612 5.612 14 C 0.099 3.901 15 C -0.131 4.131 16 C -0.102 4.102 17 H 0.084 0.916 18 C 0.185 3.815 19 H 0.052 0.948 20 C -0.172 4.172 21 N -0.725 5.725 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 C 0.111 3.889 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.040 0.960 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.078 0.922 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 -15.632 -20.935 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.023 3.977 3 C -0.209 4.209 4 O -0.183 6.183 5 C 0.191 3.809 6 N -0.267 5.267 7 C 0.001 3.999 8 C -0.240 4.240 9 C -0.040 4.040 10 C -0.202 4.202 11 C 0.367 3.633 12 O -0.392 6.392 13 N -0.347 5.347 14 C -0.024 4.024 15 C -0.169 4.169 16 C -0.122 4.122 17 H 0.102 0.898 18 C 0.075 3.925 19 H 0.070 0.930 20 C -0.232 4.232 21 N -0.366 5.366 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.579 5.579 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 C -0.010 4.010 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.165 0.835 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.096 0.904 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.524 -14.377 -21.071 26.595 hybrid contribution 0.568 -0.022 1.105 1.242 sum -6.957 -14.400 -19.966 25.581 Atomic orbital electron populations 1.22207 0.94702 1.02768 1.02808 1.22433 0.94639 0.93086 0.87503 1.21914 1.02137 0.93685 1.03208 1.86472 1.78507 1.15059 1.38301 1.19708 0.87956 0.85085 0.88175 1.67387 1.22650 1.12763 1.23906 1.22611 0.90794 0.87644 0.98840 1.21897 1.06212 1.01955 0.93973 1.21757 0.92004 0.92203 0.97993 1.19926 1.10895 0.94562 0.94858 1.17390 0.80834 0.82018 0.83075 1.90845 1.45335 1.34850 1.68124 1.48445 1.20313 1.38351 1.27583 1.22189 0.89615 0.91450 0.99117 1.22839 0.97545 0.98481 0.98051 1.22703 0.94450 0.95903 0.99156 0.89795 1.20070 0.96960 0.87154 0.88363 0.93022 1.22624 1.01248 0.97973 1.01307 1.42438 1.38032 1.12269 1.43886 1.19169 1.09021 0.97604 1.11385 0.91244 1.24747 0.98784 0.97088 1.00254 1.69650 1.32245 1.10771 1.45211 0.86293 0.79977 0.78038 0.82001 1.21335 1.21745 1.21324 1.22479 0.94238 0.98691 0.85636 0.91590 0.91094 0.92172 0.89351 0.91746 0.90452 0.91181 0.82012 0.83951 0.83483 0.91719 0.91736 0.90100 0.89634 0.94135 0.92726 0.93071 0.78145 0.93423 0.90362 0.90003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 9.53 37.16 0.35 -1.35 16 2 C 0.08 0.91 3.11 -26.74 -0.08 0.83 16 3 C -0.15 -1.54 9.56 37.15 0.36 -1.18 16 4 O -0.28 -4.22 8.73 -29.91 -0.26 -4.48 16 5 C 0.37 5.13 7.45 -16.61 -0.12 5.01 16 6 N -0.54 -6.16 8.64 -12.98 -0.11 -6.27 16 7 C 0.16 1.27 11.17 -17.49 -0.20 1.07 16 8 C -0.22 -1.58 10.09 -39.50 -0.40 -1.98 16 9 C -0.01 -0.13 8.65 -38.89 -0.34 -0.47 16 10 C -0.20 -2.66 5.46 -104.69 -0.57 -3.23 16 11 C 0.58 9.73 7.19 -12.48 -0.09 9.64 16 12 O -0.52 -10.86 16.70 -6.65 -0.11 -10.97 16 13 N -0.61 -9.19 3.33 -171.72 -0.57 -9.76 16 14 C 0.10 1.08 5.61 -3.04 -0.02 1.06 16 15 C -0.13 -1.48 6.31 -24.87 -0.16 -1.64 16 16 C -0.10 -1.61 3.07 -88.47 -0.27 -1.88 16 17 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 18 C 0.18 3.48 2.84 -67.93 -0.19 3.28 16 19 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 20 C -0.17 -2.93 8.85 37.16 0.33 -2.60 16 21 N -0.72 -17.87 5.07 -53.43 -0.27 -18.14 16 22 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 26 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 C 0.11 1.90 5.67 -2.53 -0.01 1.88 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 0.95 6.98 -51.93 -0.36 0.59 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.15 1.09 5.86 -52.48 -0.31 0.79 16 41 H 0.06 0.54 5.95 -51.93 -0.31 0.23 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 0.90 5.74 -51.93 -0.30 0.61 16 45 H 0.04 0.55 6.07 -51.93 -0.32 0.23 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.90 6.04 -51.93 -0.31 0.59 16 48 H 0.38 10.24 7.06 -40.82 -0.29 9.95 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.08 1.37 5.66 -51.93 -0.29 1.08 16 51 H 0.08 1.65 7.84 -51.93 -0.41 1.25 16 LS Contribution 405.34 15.07 6.11 6.11 Total: -1.00 -34.92 405.34 -9.11 -44.03 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -7.93 Total: 8.52 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -1.66 Total: 1.23 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.23 Total: -61.91 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -0.37 Total: -15.45 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.92 -9.11 -44.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279045963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.377 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds