Wall clock time and date at job start Wed Apr 1 2020 04:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.46964 * 2 1 4 4 O 1.42898 * 109.47211 * 119.99786 * 2 1 3 5 5 C 1.35424 * 117.00128 * 150.00414 * 4 2 1 6 6 N 1.32236 * 119.80127 * 0.29369 * 5 4 2 7 7 C 1.31877 * 121.80067 * 180.27349 * 6 5 4 8 8 C 1.38356 * 121.18858 * 359.42661 * 7 6 5 9 9 C 1.38340 * 119.45389 * 0.28155 * 8 7 6 10 10 C 1.39987 * 118.35233 * 359.97438 * 9 8 7 11 11 C 1.47516 * 120.59718 * 180.02562 * 10 9 8 12 12 O 1.21590 * 120.00222 * 223.73140 * 11 10 9 13 13 N 1.34783 * 120.00210 * 43.74009 * 11 10 9 14 14 C 1.47019 * 125.64661 * 4.98359 * 13 11 10 15 15 C 1.54337 * 107.26609 * 178.85297 * 14 13 11 16 16 C 1.55151 * 103.01852 * 338.14183 * 15 14 13 17 17 H 1.09001 * 111.03755 * 277.21436 * 16 15 14 18 18 C 1.53000 * 111.00550 * 153.38067 * 16 15 14 19 19 H 1.08999 * 109.46990 * 306.35459 * 18 16 15 20 20 C 1.53004 * 109.46930 * 66.34533 * 18 16 15 21 21 N 1.46493 * 109.47356 * 186.34750 * 18 16 15 22 22 C 1.36942 * 120.00094 * 155.00134 * 21 18 16 23 23 H 1.08000 * 119.99911 * 359.97438 * 22 21 18 24 24 C 1.38806 * 120.00117 * 180.02562 * 22 21 18 25 25 N 1.31617 * 120.00126 * 179.97438 * 24 22 21 26 26 Si 1.86809 * 120.00027 * 359.97438 * 24 22 21 27 27 H 1.48498 * 109.46984 * 90.00266 * 26 24 22 28 28 H 1.48500 * 109.46974 * 210.00232 * 26 24 22 29 29 H 1.48500 * 109.47063 * 330.00197 * 26 24 22 30 30 C 1.47424 * 125.64764 * 185.29845 * 13 11 10 31 31 H 1.09001 * 109.47531 * 300.00071 * 1 2 3 32 32 H 1.09000 * 109.47117 * 60.00076 * 1 2 3 33 33 H 1.09005 * 109.47174 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47531 * 239.99929 * 2 1 3 35 35 H 1.09004 * 109.47313 * 60.00110 * 3 2 1 36 36 H 1.09002 * 109.47094 * 180.02562 * 3 2 1 37 37 H 1.09000 * 109.47142 * 299.99909 * 3 2 1 38 38 H 1.08006 * 119.40704 * 179.70638 * 7 6 5 39 39 H 1.07997 * 120.27600 * 180.25927 * 8 7 6 40 40 H 1.08002 * 120.81943 * 180.02562 * 9 8 7 41 41 H 1.09003 * 109.88452 * 298.39844 * 14 13 11 42 42 H 1.09001 * 109.88699 * 59.56097 * 14 13 11 43 43 H 1.08995 * 110.84963 * 219.67171 * 15 14 13 44 44 H 1.09005 * 110.66508 * 96.52594 * 15 14 13 45 45 H 1.09000 * 109.46942 * 180.02562 * 20 18 16 46 46 H 1.08997 * 109.47706 * 300.00346 * 20 18 16 47 47 H 1.08999 * 109.47043 * 60.00532 * 20 18 16 48 48 H 0.97002 * 120.00055 * 334.99860 * 21 18 16 49 49 H 0.97007 * 120.00402 * 179.97438 * 25 24 22 50 50 H 1.08999 * 110.36815 * 322.91902 * 30 13 11 51 51 H 1.08998 * 110.36926 * 85.14094 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.1965 -1.3117 1.0655 6 7 3.8614 -1.2849 -0.0772 7 6 5.0207 -1.8968 -0.2212 8 6 5.6010 -2.5882 0.8274 9 6 4.9516 -2.6441 2.0476 10 6 3.7197 -1.9915 2.1755 11 6 2.9848 -2.0187 3.4543 12 8 1.7851 -2.2162 3.4620 13 7 3.6432 -1.8245 4.6142 14 6 5.0652 -1.4745 4.7441 15 6 5.3650 -1.3271 6.2508 16 6 3.9645 -1.0553 6.8608 17 1 3.6974 -0.0021 6.7737 18 6 3.9028 -1.5147 8.3189 19 1 4.2151 -2.5570 8.3849 20 6 4.8363 -0.6481 9.1666 21 7 2.5306 -1.3837 8.8146 22 6 2.0999 -2.1661 9.8527 23 1 2.7718 -2.8800 10.3057 24 6 0.7995 -2.0423 10.3221 25 7 0.3854 -2.7946 11.3195 26 14 -0.3630 -0.8078 9.5381 27 1 -1.0928 -1.4566 8.4193 28 1 -1.3361 -0.3305 10.5531 29 1 0.4160 0.3449 9.0186 30 6 3.0582 -1.9342 5.9630 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.1299 1.4426 -0.0005 37 1 1.6766 1.9563 -0.8900 38 1 5.5284 -1.8537 -1.1735 39 1 6.5530 -3.0805 0.6943 40 1 5.3846 -3.1772 2.8810 41 1 5.6821 -2.2652 4.3170 42 1 5.2630 -0.5314 4.2346 43 1 6.0346 -0.4865 6.4327 44 1 5.7877 -2.2487 6.6510 45 1 4.7927 -0.9757 10.2053 46 1 5.8574 -0.7455 8.7978 47 1 4.5241 0.3942 9.1006 48 1 1.9270 -0.7427 8.4075 49 1 -0.5233 -2.7078 11.6478 50 1 2.0372 -1.5527 5.9658 51 1 3.0765 -2.9702 6.3013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279045964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:18 Heat of formation + Delta-G solvation = -18.707458 kcal Electronic energy + Delta-G solvation = -31268.503968 eV Core-core repulsion = 27168.845972 eV Total energy + Delta-G solvation = -4099.657996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.23451 -39.74833 -38.48629 -37.70295 -35.35356 -33.53344 -33.19067 -32.29038 -30.90734 -30.41741 -28.95194 -28.37329 -27.51550 -25.22467 -24.20484 -23.64553 -22.95494 -21.46757 -21.33891 -19.87928 -19.84581 -18.66341 -17.75682 -17.25766 -17.20965 -16.11970 -15.84184 -15.58340 -15.50150 -14.90984 -14.64933 -14.29140 -14.21373 -14.00530 -13.88263 -13.48576 -13.32497 -13.20087 -12.76726 -12.67507 -12.58925 -12.53494 -12.52068 -12.31159 -12.21646 -12.14284 -11.76253 -11.67940 -11.20857 -11.05281 -10.98381 -10.83683 -10.63302 -10.57911 -10.33298 -10.22909 -10.19515 -9.94551 -9.66888 -9.55320 -8.91300 -8.82441 -8.53295 -7.25521 -5.74362 -3.10025 0.48666 0.91183 2.64270 2.76925 2.95891 3.42522 3.46276 3.46752 3.51156 3.87480 4.33886 4.37610 4.58771 4.59640 4.63180 4.64029 4.71356 4.76323 4.76454 4.91574 4.95843 5.12262 5.23373 5.29337 5.34417 5.46126 5.47193 5.50339 5.52423 5.57211 5.58258 5.67451 5.71085 5.79538 5.83098 5.87318 5.93006 5.97851 6.04759 6.06805 6.20416 6.28042 6.32111 6.40489 6.50328 6.77373 6.98813 7.01065 7.41540 7.56298 8.00906 8.19855 8.44596 9.22877 9.95842 10.14821 11.43940 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012077 B = 0.002946 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.886942 B = 9501.003926 C =10983.916548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.168 4.168 4 O -0.278 6.278 5 C 0.370 3.630 6 N -0.544 5.544 7 C 0.159 3.841 8 C -0.220 4.220 9 C -0.011 4.011 10 C -0.198 4.198 11 C 0.580 3.420 12 O -0.516 6.516 13 N -0.616 5.616 14 C 0.098 3.902 15 C -0.123 4.123 16 C -0.106 4.106 17 H 0.080 0.920 18 C 0.190 3.810 19 H 0.058 0.942 20 C -0.164 4.164 21 N -0.749 5.749 22 C -0.242 4.242 23 H 0.090 0.910 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.880 3.120 27 H -0.282 1.282 28 H -0.292 1.292 29 H -0.277 1.277 30 C 0.119 3.881 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.163 0.837 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.058 0.942 46 H 0.040 0.960 47 H 0.044 0.956 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.080 0.920 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.296 5.001 -26.248 30.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.226 4.226 4 O -0.183 6.183 5 C 0.190 3.810 6 N -0.267 5.267 7 C 0.002 3.998 8 C -0.240 4.240 9 C -0.037 4.037 10 C -0.204 4.204 11 C 0.368 3.632 12 O -0.391 6.391 13 N -0.350 5.350 14 C -0.025 4.025 15 C -0.161 4.161 16 C -0.126 4.126 17 H 0.098 0.902 18 C 0.080 3.920 19 H 0.076 0.924 20 C -0.224 4.224 21 N -0.392 5.392 22 C -0.371 4.371 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.582 5.582 26 Si 0.710 3.290 27 H -0.209 1.209 28 H -0.218 1.218 29 H -0.204 1.204 30 C -0.003 4.003 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.180 0.820 39 H 0.161 0.839 40 H 0.166 0.834 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.098 0.902 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 12.965 5.204 -26.592 30.039 hybrid contribution -0.406 0.528 0.044 0.668 sum 12.559 5.733 -26.549 29.924 Atomic orbital electron populations 1.21900 0.92564 1.03368 1.03002 1.22433 0.94923 0.92670 0.87667 1.22226 1.01881 0.95643 1.02807 1.86468 1.30505 1.63059 1.38313 1.19724 0.85528 0.87578 0.88123 1.67388 1.10928 1.24596 1.23835 1.22623 0.89081 0.89269 0.98805 1.21915 1.03068 1.05070 0.93959 1.21741 0.90679 0.93120 0.98143 1.19924 0.98235 1.07431 0.94785 1.17398 0.86380 0.77453 0.82017 1.90845 1.13646 1.48227 1.86415 1.48452 1.11077 1.69387 1.06102 1.22190 0.82052 1.00019 0.98196 1.22672 0.97698 1.03065 0.92686 1.22718 0.93859 0.99911 0.96155 0.90170 1.20127 0.86175 0.97568 0.88084 0.92368 1.22410 0.97950 1.00425 1.01636 1.42801 1.08880 1.46577 1.40920 1.19028 0.96464 1.14259 1.07395 0.89194 1.24641 0.97068 0.99108 0.98112 1.69696 1.17729 1.42280 1.28499 0.86616 0.81594 0.81876 0.78865 1.20882 1.21803 1.20364 1.22291 0.98303 1.00807 0.78874 0.91379 0.90503 0.91584 0.89280 0.91813 0.92130 0.90975 0.81968 0.83885 0.83423 0.91522 0.91742 0.89939 0.90046 0.92273 0.94080 0.93643 0.80651 0.93085 0.90167 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.56 37.15 0.36 -1.09 16 2 C 0.08 0.86 3.11 -26.73 -0.08 0.78 16 3 C -0.17 -1.54 9.53 37.16 0.35 -1.19 16 4 O -0.28 -4.03 8.67 -31.30 -0.27 -4.31 16 5 C 0.37 4.92 7.45 -16.61 -0.12 4.80 16 6 N -0.54 -5.90 8.64 -12.98 -0.11 -6.01 16 7 C 0.16 1.21 11.17 -17.49 -0.20 1.02 16 8 C -0.22 -1.50 10.09 -39.50 -0.40 -1.90 16 9 C -0.01 -0.10 8.58 -38.89 -0.33 -0.44 16 10 C -0.20 -2.58 5.42 -104.69 -0.57 -3.14 16 11 C 0.58 9.45 7.21 -12.48 -0.09 9.36 16 12 O -0.52 -10.64 16.55 -8.05 -0.13 -10.78 16 13 N -0.62 -8.86 3.33 -171.74 -0.57 -9.43 16 14 C 0.10 1.01 5.90 -3.06 -0.02 0.99 16 15 C -0.12 -1.28 5.59 -24.89 -0.14 -1.42 16 16 C -0.11 -1.55 2.63 -88.47 -0.23 -1.78 16 17 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 18 C 0.19 3.38 2.41 -67.93 -0.16 3.22 16 19 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 20 C -0.16 -2.65 9.34 37.16 0.35 -2.31 16 21 N -0.75 -17.21 4.62 -53.43 -0.25 -17.46 16 22 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 23 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 24 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -29.51 13.97 55.49 0.78 -28.73 16 26 Si 0.88 22.65 27.74 -169.99 -4.71 17.93 16 27 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 29 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 30 C 0.12 1.96 6.11 -2.53 -0.02 1.94 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.92 6.99 -51.93 -0.36 0.56 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.16 0.67 8.06 -52.48 -0.42 0.24 16 39 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.15 1.07 6.09 -52.49 -0.32 0.75 16 41 H 0.07 0.52 5.70 -51.93 -0.30 0.23 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 44 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.04 0.53 7.50 -51.93 -0.39 0.14 16 47 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.36 8.38 5.66 -40.82 -0.23 8.15 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 50 H 0.08 1.55 7.99 -51.93 -0.41 1.13 16 51 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 LS Contribution 410.30 15.07 6.18 6.18 Total: -1.00 -35.75 410.30 -9.00 -44.75 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -8.35 Total: 5.79 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -1.56 Total: 2.06 kcal Atomic # 7 Polarization: -61.48 SS G_CDS: -0.16 Total: -61.64 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.40 Total: -15.08 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.75 -9.00 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279045964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.044 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds