Wall clock time and date at job start Wed Apr 1 2020 04:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 O 1.42901 * 109.47430 * 119.99701 * 2 1 3 5 5 C 1.35424 * 117.00290 * 150.00186 * 4 2 1 6 6 N 1.32231 * 119.79844 * 359.97438 * 5 4 2 7 7 C 1.31886 * 121.80025 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.18479 * 359.97438 * 7 6 5 9 9 C 1.38339 * 119.45963 * 359.76691 * 8 7 6 10 10 C 1.39988 * 118.34871 * 0.49536 * 9 8 7 11 11 C 1.47524 * 120.60091 * 179.75706 * 10 9 8 12 12 O 1.21590 * 120.00083 * 134.43166 * 11 10 9 13 13 N 1.34777 * 119.99602 * 314.15743 * 11 10 9 14 14 C 1.47020 * 125.65099 * 4.54662 * 13 11 10 15 15 C 1.54315 * 107.27661 * 180.97063 * 14 13 11 16 16 C 1.55154 * 102.86253 * 22.52525 * 15 14 13 17 17 H 1.09003 * 111.00217 * 82.37770 * 16 15 14 18 18 C 1.53000 * 111.00254 * 206.22808 * 16 15 14 19 19 H 1.09002 * 109.46942 * 55.80476 * 18 16 15 20 20 C 1.53001 * 109.46910 * 175.80205 * 18 16 15 21 21 N 1.46496 * 109.47309 * 295.80160 * 18 16 15 22 22 C 1.36939 * 120.00244 * 155.00362 * 21 18 16 23 23 H 1.08000 * 119.99502 * 359.97438 * 22 21 18 24 24 C 1.38810 * 120.00137 * 180.02562 * 22 21 18 25 25 N 1.31615 * 120.00285 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99876 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47328 * 59.99842 * 26 24 22 28 28 H 1.48497 * 109.47540 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46994 * 300.00063 * 26 24 22 30 30 C 1.47424 * 125.64488 * 184.85997 * 13 11 10 31 31 H 1.08998 * 109.47238 * 300.00186 * 1 2 3 32 32 H 1.09005 * 109.47075 * 60.00416 * 1 2 3 33 33 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47414 * 240.00265 * 2 1 3 35 35 H 1.09001 * 109.47591 * 299.99521 * 3 2 1 36 36 H 1.08998 * 109.47311 * 59.99858 * 3 2 1 37 37 H 1.09008 * 109.47051 * 179.97438 * 3 2 1 38 38 H 1.08001 * 119.40770 * 179.97438 * 7 6 5 39 39 H 1.08000 * 120.27141 * 180.02562 * 8 7 6 40 40 H 1.08005 * 120.82879 * 180.25793 * 9 8 7 41 41 H 1.08996 * 109.88291 * 300.51621 * 14 13 11 42 42 H 1.08999 * 109.88492 * 61.67739 * 14 13 11 43 43 H 1.09001 * 110.92265 * 264.11074 * 15 14 13 44 44 H 1.09005 * 110.59047 * 140.78927 * 15 14 13 45 45 H 1.09005 * 109.47395 * 174.87202 * 20 18 16 46 46 H 1.09003 * 109.46869 * 294.87039 * 20 18 16 47 47 H 1.08997 * 109.47517 * 54.87196 * 20 18 16 48 48 H 0.96999 * 120.00048 * 334.99902 * 21 18 16 49 49 H 0.97002 * 120.00317 * 180.02562 * 25 24 22 50 50 H 1.09004 * 110.36372 * 274.66978 * 30 13 11 51 51 H 1.08999 * 110.37038 * 36.88463 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1965 -1.3117 1.0655 6 7 3.8584 -1.2902 -0.0790 7 6 5.0199 -1.8984 -0.2217 8 6 5.6004 -2.5893 0.8269 9 6 4.9540 -2.6398 2.0490 10 6 3.7196 -1.9918 2.1754 11 6 2.9849 -2.0185 3.4544 12 8 2.4961 -0.9965 3.8962 13 7 2.8508 -3.1767 4.1304 14 6 3.4624 -4.4612 3.7594 15 6 3.0128 -5.5021 4.8061 16 6 1.7140 -4.8765 5.3796 17 1 0.8605 -5.0892 4.7358 18 6 1.4555 -5.3620 6.8074 19 1 2.3240 -5.1426 7.4285 20 6 0.2285 -4.6459 7.3752 21 7 1.2157 -6.8071 6.7959 22 6 1.4639 -7.5513 7.9183 23 1 1.8368 -7.0728 8.8119 24 6 1.2371 -8.9207 7.9073 25 7 0.7832 -9.5039 6.8182 26 14 1.5763 -9.9360 9.4382 27 1 0.7337 -9.4418 10.5567 28 1 1.2560 -11.3607 9.1685 29 1 3.0097 -9.8125 9.8064 30 6 2.0611 -3.3669 5.3607 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 1.4425 0.0005 38 1 5.5270 -1.8563 -1.1743 39 1 6.5523 -3.0817 0.6939 40 1 5.3890 -3.1694 2.8838 41 1 3.1238 -4.7602 2.7674 42 1 4.5486 -4.3717 3.7712 43 1 3.7635 -5.6170 5.5881 44 1 2.8019 -6.4592 4.3289 45 1 -0.0102 -5.0564 8.3564 46 1 0.4404 -3.5807 7.4688 47 1 -0.6190 -4.7902 6.7051 48 1 0.8811 -7.2369 5.9933 49 1 0.6244 -10.4608 6.8106 50 1 2.6540 -3.1030 6.2365 51 1 1.1516 -2.7673 5.3243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279045966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:27 Heat of formation + Delta-G solvation = -23.626035 kcal Electronic energy + Delta-G solvation = -30969.200952 eV Core-core repulsion = 26869.329670 eV Total energy + Delta-G solvation = -4099.871282 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.21987 -39.72491 -38.46826 -37.64007 -35.21658 -33.53516 -33.17723 -32.24621 -30.80144 -30.21157 -29.21752 -27.52942 -27.44796 -25.37225 -24.33133 -23.81559 -22.77512 -21.52676 -21.33099 -19.90853 -19.63491 -18.62880 -17.54634 -17.20841 -17.00217 -16.08755 -15.91375 -15.74204 -15.40710 -14.84901 -14.60846 -14.36845 -13.98970 -13.86597 -13.63615 -13.50143 -13.30919 -13.17213 -12.95613 -12.60725 -12.54981 -12.53751 -12.44474 -12.34804 -12.21007 -12.05758 -11.70548 -11.22172 -11.21192 -11.04381 -10.88074 -10.71255 -10.58673 -10.44010 -10.26977 -10.24499 -10.20444 -9.87696 -9.69195 -9.62139 -8.91903 -8.81546 -8.55223 -6.97402 -5.77833 -3.06208 0.51631 0.94299 2.61894 2.75065 2.96629 3.42754 3.47847 3.48211 3.48433 3.89998 4.36677 4.42333 4.56485 4.60698 4.65677 4.71167 4.79325 4.80524 4.87302 4.97345 5.11989 5.17600 5.29157 5.32284 5.43906 5.47009 5.51284 5.53365 5.53483 5.59911 5.68344 5.74308 5.87209 5.88560 5.91729 5.92456 5.99010 6.07036 6.07570 6.21885 6.25959 6.38397 6.46292 6.58877 6.65369 6.87625 7.01445 7.10688 7.43089 7.55218 7.68894 8.15744 8.40774 9.52127 10.09386 10.44451 11.44731 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.002275 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.980375 B =12303.377611 C =13038.991607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.079 3.921 3 C -0.167 4.167 4 O -0.280 6.280 5 C 0.370 3.630 6 N -0.543 5.543 7 C 0.159 3.841 8 C -0.218 4.218 9 C -0.012 4.012 10 C -0.198 4.198 11 C 0.583 3.417 12 O -0.524 6.524 13 N -0.612 5.612 14 C 0.095 3.905 15 C -0.116 4.116 16 C -0.102 4.102 17 H 0.081 0.919 18 C 0.186 3.814 19 H 0.049 0.951 20 C -0.168 4.168 21 N -0.722 5.722 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.013 4.013 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.286 1.286 30 C 0.116 3.884 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.163 0.837 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.383 0.617 49 H 0.255 0.745 50 H 0.070 0.930 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.133 17.457 -17.161 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 C -0.225 4.225 4 O -0.185 6.185 5 C 0.190 3.810 6 N -0.267 5.267 7 C 0.002 3.998 8 C -0.239 4.239 9 C -0.038 4.038 10 C -0.204 4.204 11 C 0.370 3.630 12 O -0.400 6.400 13 N -0.346 5.346 14 C -0.028 4.028 15 C -0.153 4.153 16 C -0.122 4.122 17 H 0.099 0.901 18 C 0.075 3.925 19 H 0.067 0.933 20 C -0.228 4.228 21 N -0.363 5.363 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.213 1.213 30 C -0.006 4.006 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.181 0.819 39 H 0.162 0.838 40 H 0.166 0.834 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.217 0.783 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.336 18.495 -17.269 26.346 hybrid contribution 0.506 -1.277 1.006 1.703 sum 7.842 17.218 -16.263 24.949 Atomic orbital electron populations 1.21908 0.92649 1.03195 1.03103 1.22427 0.94776 0.92881 0.87625 1.22204 1.01962 0.95566 1.02720 1.86443 1.30673 1.63133 1.38293 1.19677 0.85798 0.87277 0.88230 1.67380 1.10954 1.24537 1.23853 1.22623 0.89001 0.89282 0.98862 1.21926 1.03127 1.04906 0.93893 1.21791 0.91552 0.92352 0.98102 1.19879 0.98858 1.06890 0.94790 1.17388 0.80043 0.82491 0.83042 1.90807 1.48580 1.32144 1.68495 1.48447 1.50285 1.08646 1.27190 1.22321 0.97300 0.83537 0.99605 1.22587 0.97725 0.97520 0.97509 1.22678 0.97766 0.92362 0.99402 0.90093 1.20125 0.95429 0.85851 0.91054 0.93258 1.22496 1.00215 0.98283 1.01843 1.42359 1.78871 1.00788 1.14281 1.19170 1.36378 0.89586 0.91575 0.91287 1.24711 1.02231 0.96718 0.97252 1.69642 1.51618 1.10046 1.26890 0.86301 0.77918 0.79480 0.82675 1.21337 1.21775 1.21329 1.22317 0.95426 0.96952 0.85889 0.91353 0.90434 0.91756 0.89293 0.91086 0.91707 0.92119 0.81939 0.83833 0.83364 0.91600 0.91647 0.90087 0.89419 0.92556 0.94350 0.93585 0.78308 0.93514 0.91168 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.56 37.16 0.36 -0.97 16 2 C 0.08 0.83 3.11 -26.73 -0.08 0.74 16 3 C -0.17 -1.53 9.53 37.16 0.35 -1.17 16 4 O -0.28 -3.93 8.72 -30.15 -0.26 -4.19 16 5 C 0.37 4.88 7.45 -16.61 -0.12 4.76 16 6 N -0.54 -5.97 8.64 -12.98 -0.11 -6.09 16 7 C 0.16 1.27 11.17 -17.49 -0.20 1.07 16 8 C -0.22 -1.61 10.09 -39.50 -0.40 -2.00 16 9 C -0.01 -0.12 8.66 -38.89 -0.34 -0.45 16 10 C -0.20 -2.58 5.46 -104.69 -0.57 -3.15 16 11 C 0.58 9.06 7.20 -12.47 -0.09 8.97 16 12 O -0.52 -9.93 16.68 -6.90 -0.12 -10.04 16 13 N -0.61 -8.64 3.33 -171.76 -0.57 -9.21 16 14 C 0.10 1.13 5.61 -3.07 -0.02 1.11 16 15 C -0.12 -1.63 6.20 -24.90 -0.15 -1.79 16 16 C -0.10 -1.59 2.63 -88.47 -0.23 -1.82 16 17 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 18 C 0.19 3.46 2.40 -67.93 -0.16 3.30 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 C -0.17 -2.99 9.23 37.16 0.34 -2.64 16 21 N -0.72 -17.02 4.89 -53.43 -0.26 -17.28 16 22 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 23 H 0.07 1.80 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 25 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 26 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 C 0.12 1.71 5.49 -2.53 -0.01 1.70 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.09 0.90 6.98 -51.93 -0.36 0.53 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 38 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 39 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.15 1.16 5.86 -52.48 -0.31 0.85 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.63 5.94 -51.93 -0.31 0.32 16 43 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 44 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.04 0.58 7.59 -51.93 -0.39 0.19 16 47 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 48 H 0.38 9.65 7.80 -40.82 -0.32 9.34 16 49 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.07 1.01 8.04 -51.93 -0.42 0.59 16 51 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 LS Contribution 413.61 15.07 6.23 6.23 Total: -1.00 -33.05 413.61 -9.37 -42.42 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -8.41 Total: 7.14 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.57 Total: 0.76 kcal Atomic # 7 Polarization: -59.01 SS G_CDS: -0.22 Total: -59.23 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -0.38 Total: -14.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -33.05 -9.37 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279045966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.792 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds