Wall clock time and date at job start Wed Apr 1 2020 04:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46932 * 2 1 4 4 O 1.42901 * 109.47430 * 119.99701 * 2 1 3 5 5 C 1.35424 * 117.00290 * 150.00186 * 4 2 1 6 6 N 1.32231 * 119.79844 * 359.97438 * 5 4 2 7 7 C 1.31886 * 121.80025 * 180.02562 * 6 5 4 8 8 C 1.38349 * 121.18479 * 359.97438 * 7 6 5 9 9 C 1.38339 * 119.45963 * 359.76691 * 8 7 6 10 10 C 1.39988 * 118.34871 * 0.49536 * 9 8 7 11 11 C 1.47524 * 120.60091 * 179.75706 * 10 9 8 12 12 O 1.21590 * 120.00083 * 134.43166 * 11 10 9 13 13 N 1.34777 * 119.99602 * 314.15743 * 11 10 9 14 14 C 1.47020 * 125.65099 * 4.54662 * 13 11 10 15 15 C 1.54315 * 107.27661 * 180.97063 * 14 13 11 16 16 C 1.55154 * 102.86253 * 22.52525 * 15 14 13 17 17 H 1.09003 * 111.00217 * 82.37770 * 16 15 14 18 18 C 1.53000 * 111.00254 * 206.22808 * 16 15 14 19 19 H 1.09002 * 109.46942 * 55.80476 * 18 16 15 20 20 C 1.53001 * 109.46910 * 175.80205 * 18 16 15 21 21 N 1.46496 * 109.47309 * 295.80160 * 18 16 15 22 22 C 1.36939 * 120.00244 * 155.00362 * 21 18 16 23 23 H 1.08000 * 119.99502 * 359.97438 * 22 21 18 24 24 C 1.38810 * 120.00137 * 180.02562 * 22 21 18 25 25 N 1.31615 * 120.00285 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99876 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47328 * 59.99842 * 26 24 22 28 28 H 1.48497 * 109.47540 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46994 * 300.00063 * 26 24 22 30 30 C 1.47424 * 125.64488 * 184.85997 * 13 11 10 31 31 H 1.08998 * 109.47238 * 300.00186 * 1 2 3 32 32 H 1.09005 * 109.47075 * 60.00416 * 1 2 3 33 33 H 1.08999 * 109.46907 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47414 * 240.00265 * 2 1 3 35 35 H 1.09001 * 109.47591 * 299.99521 * 3 2 1 36 36 H 1.08998 * 109.47311 * 59.99858 * 3 2 1 37 37 H 1.09008 * 109.47051 * 179.97438 * 3 2 1 38 38 H 1.08001 * 119.40770 * 179.97438 * 7 6 5 39 39 H 1.08000 * 120.27141 * 180.02562 * 8 7 6 40 40 H 1.08005 * 120.82879 * 180.25793 * 9 8 7 41 41 H 1.08996 * 109.88291 * 300.51621 * 14 13 11 42 42 H 1.08999 * 109.88492 * 61.67739 * 14 13 11 43 43 H 1.09001 * 110.92265 * 264.11074 * 15 14 13 44 44 H 1.09005 * 110.59047 * 140.78927 * 15 14 13 45 45 H 1.09005 * 109.47395 * 174.87202 * 20 18 16 46 46 H 1.09003 * 109.46869 * 294.87039 * 20 18 16 47 47 H 1.08997 * 109.47517 * 54.87196 * 20 18 16 48 48 H 0.96999 * 120.00048 * 334.99902 * 21 18 16 49 49 H 0.97002 * 120.00317 * 180.02562 * 25 24 22 50 50 H 1.09004 * 110.36372 * 274.66978 * 30 13 11 51 51 H 1.08999 * 110.37038 * 36.88463 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.1965 -1.3117 1.0655 6 7 3.8584 -1.2902 -0.0790 7 6 5.0199 -1.8984 -0.2217 8 6 5.6004 -2.5893 0.8269 9 6 4.9540 -2.6398 2.0490 10 6 3.7196 -1.9918 2.1754 11 6 2.9849 -2.0185 3.4544 12 8 2.4961 -0.9965 3.8962 13 7 2.8508 -3.1767 4.1304 14 6 3.4624 -4.4612 3.7594 15 6 3.0128 -5.5021 4.8061 16 6 1.7140 -4.8765 5.3796 17 1 0.8605 -5.0892 4.7358 18 6 1.4555 -5.3620 6.8074 19 1 2.3240 -5.1426 7.4285 20 6 0.2285 -4.6459 7.3752 21 7 1.2157 -6.8071 6.7959 22 6 1.4639 -7.5513 7.9183 23 1 1.8368 -7.0728 8.8119 24 6 1.2371 -8.9207 7.9073 25 7 0.7832 -9.5039 6.8182 26 14 1.5763 -9.9360 9.4382 27 1 0.7337 -9.4418 10.5567 28 1 1.2560 -11.3607 9.1685 29 1 3.0097 -9.8125 9.8064 30 6 2.0611 -3.3669 5.3607 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8899 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1300 1.4425 0.0005 38 1 5.5270 -1.8563 -1.1743 39 1 6.5523 -3.0817 0.6939 40 1 5.3890 -3.1694 2.8838 41 1 3.1238 -4.7602 2.7674 42 1 4.5486 -4.3717 3.7712 43 1 3.7635 -5.6170 5.5881 44 1 2.8019 -6.4592 4.3289 45 1 -0.0102 -5.0564 8.3564 46 1 0.4404 -3.5807 7.4688 47 1 -0.6190 -4.7902 6.7051 48 1 0.8811 -7.2369 5.9933 49 1 0.6244 -10.4608 6.8106 50 1 2.6540 -3.1030 6.2365 51 1 1.1516 -2.7673 5.3243 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279045966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:25 Heat of formation + Delta-G solvation = -44.735547 kcal Electronic energy + Delta-G solvation = -30970.116329 eV Core-core repulsion = 26869.329670 eV Total energy + Delta-G solvation = -4100.786659 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.07887 -40.82429 -39.28135 -38.92667 -36.79517 -34.44110 -34.28782 -33.64085 -31.94768 -31.17987 -30.79655 -28.84012 -28.23119 -26.53697 -25.71121 -24.86547 -23.90968 -22.81965 -22.16647 -21.11548 -20.91671 -19.43755 -19.15850 -18.40643 -18.06563 -17.24491 -16.98848 -16.63139 -16.40004 -16.20211 -15.72499 -15.50583 -15.22615 -15.05026 -14.79539 -14.66671 -14.49172 -14.19094 -14.06337 -13.85141 -13.83336 -13.39706 -13.34447 -13.27613 -13.23993 -13.18833 -12.91552 -12.86853 -12.74183 -12.31364 -12.21371 -11.98371 -11.96244 -11.81120 -11.64233 -11.54619 -11.43861 -11.28321 -10.98866 -10.88699 -10.58302 -9.77000 -9.51564 -8.96132 -7.89042 -5.16104 -0.25234 0.22699 1.50300 1.51928 1.55551 1.57884 1.89980 1.96764 2.59674 2.71352 3.15646 3.38339 3.45184 3.64659 3.67080 3.73893 3.84960 3.92405 3.96128 3.98067 4.15041 4.20774 4.23320 4.29250 4.36448 4.48984 4.50668 4.60227 4.63714 4.66588 4.71610 4.77795 4.78482 4.83328 4.88280 4.91230 4.97280 5.05488 5.09384 5.14902 5.16595 5.19710 5.20582 5.32710 5.38227 5.46246 5.56551 5.60838 6.22539 6.32760 6.40327 6.73943 7.01295 7.39953 8.15568 8.39601 9.34081 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017639 B = 0.002275 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.980375 B =12303.377611 C =13038.991607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.072 3.928 3 C -0.160 4.160 4 O -0.312 6.312 5 C 0.348 3.652 6 N -0.554 5.554 7 C 0.160 3.840 8 C -0.201 4.201 9 C -0.012 4.012 10 C -0.228 4.228 11 C 0.581 3.419 12 O -0.571 6.571 13 N -0.611 5.611 14 C 0.102 3.898 15 C -0.111 4.111 16 C -0.093 4.093 17 H 0.072 0.928 18 C 0.184 3.816 19 H 0.050 0.950 20 C -0.161 4.161 21 N -0.730 5.730 22 C -0.231 4.231 23 H 0.074 0.926 24 C -0.074 4.074 25 N -0.968 5.968 26 Si 0.966 3.034 27 H -0.283 1.283 28 H -0.299 1.299 29 H -0.277 1.277 30 C 0.122 3.878 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.203 0.797 39 H 0.185 0.815 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.064 0.936 47 H 0.041 0.959 48 H 0.373 0.627 49 H 0.249 0.751 50 H 0.076 0.924 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.490 17.846 -18.490 27.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 C -0.217 4.217 4 O -0.218 6.218 5 C 0.169 3.831 6 N -0.278 5.278 7 C 0.003 3.997 8 C -0.221 4.221 9 C -0.037 4.037 10 C -0.234 4.234 11 C 0.371 3.629 12 O -0.451 6.451 13 N -0.344 5.344 14 C -0.019 4.019 15 C -0.149 4.149 16 C -0.113 4.113 17 H 0.090 0.910 18 C 0.075 3.925 19 H 0.068 0.932 20 C -0.221 4.221 21 N -0.370 5.370 22 C -0.363 4.363 23 H 0.092 0.908 24 C -0.266 4.266 25 N -0.619 5.619 26 Si 0.795 3.205 27 H -0.210 1.210 28 H -0.225 1.225 29 H -0.204 1.204 30 C -0.001 4.001 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.219 0.781 39 H 0.202 0.798 40 H 0.183 0.817 41 H 0.093 0.907 42 H 0.116 0.884 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.083 0.917 47 H 0.060 0.940 48 H 0.205 0.795 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.716 18.908 -18.590 28.240 hybrid contribution -0.165 -1.333 1.347 1.903 sum 9.551 17.574 -17.243 26.408 Atomic orbital electron populations 1.21929 0.91770 1.02902 1.03891 1.22646 0.95526 0.93231 0.86915 1.22157 1.01195 0.95024 1.03356 1.86405 1.31615 1.63802 1.40006 1.19868 0.86074 0.88005 0.89147 1.67447 1.12140 1.25275 1.22913 1.23424 0.87875 0.87685 1.00690 1.22372 1.03920 1.03439 0.92365 1.22061 0.90217 0.91734 0.99695 1.19845 1.00498 1.09487 0.93557 1.17845 0.79537 0.81909 0.83648 1.90765 1.50778 1.33742 1.69773 1.48477 1.49963 1.09199 1.26762 1.22382 0.99003 0.81571 0.98979 1.22509 0.96709 0.97696 0.97958 1.22455 0.98408 0.93193 0.97282 0.90970 1.20278 0.95659 0.83425 0.93102 0.93153 1.22377 0.99506 0.99720 1.00469 1.42500 1.78729 1.02639 1.13104 1.19518 1.34496 0.89935 0.92358 0.90843 1.25432 1.03329 0.97981 0.99860 1.69792 1.53651 1.09750 1.28741 0.85327 0.78056 0.77469 0.79601 1.20960 1.22524 1.20359 1.22169 0.95400 0.95753 0.86757 0.92489 0.87632 0.92568 0.89018 0.88481 0.92926 0.93169 0.78076 0.79813 0.81669 0.90721 0.88448 0.90323 0.90411 0.94373 0.91688 0.94030 0.79513 0.94222 0.90574 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.56 71.98 0.69 -1.91 16 2 C 0.07 1.52 3.11 30.59 0.10 1.62 16 3 C -0.16 -2.90 9.53 71.98 0.69 -2.22 16 4 O -0.31 -9.08 8.72 -75.54 -0.66 -9.74 16 5 C 0.35 9.13 7.45 85.13 0.63 9.77 16 6 N -0.55 -11.32 8.64 -308.01 -2.66 -13.98 16 7 C 0.16 1.99 11.17 84.71 0.95 2.93 16 8 C -0.20 -2.11 10.09 22.32 0.23 -1.89 16 9 C -0.01 -0.19 8.66 22.72 0.20 0.01 16 10 C -0.23 -5.77 5.46 -19.91 -0.11 -5.88 16 11 C 0.58 18.20 7.20 86.69 0.62 18.83 16 12 O -0.57 -22.47 16.68 7.65 0.13 -22.35 16 13 N -0.61 -16.90 3.33 -815.58 -2.71 -19.62 16 14 C 0.10 2.24 5.61 86.73 0.49 2.73 16 15 C -0.11 -3.03 6.20 31.78 0.20 -2.83 16 16 C -0.09 -2.89 2.63 -9.40 -0.02 -2.92 16 17 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 18 C 0.18 6.83 2.40 44.99 0.11 6.94 16 19 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 20 C -0.16 -5.68 9.23 71.98 0.66 -5.02 16 21 N -0.73 -34.67 4.89 -322.94 -1.58 -36.25 16 22 C -0.23 -12.29 9.93 84.03 0.83 -11.46 16 23 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 25 N -0.97 -57.65 13.06 21.65 0.28 -57.37 16 26 Si 0.97 45.24 29.55 68.60 2.03 47.27 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 30 C 0.12 3.56 5.49 86.85 0.48 4.03 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.82 6.98 -2.39 -0.02 1.80 16 35 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.20 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 40 H 0.17 1.98 5.86 -2.91 -0.02 1.96 16 41 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 1.55 5.94 -2.39 -0.01 1.53 16 43 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 44 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.06 1.93 7.59 -2.39 -0.02 1.92 16 47 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.37 19.15 7.80 -92.71 -0.72 18.43 16 49 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 50 H 0.08 2.13 8.04 -2.38 -0.02 2.12 16 51 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 Total: -1.00 -74.48 413.61 2.22 -72.26 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: 0.20 Total: 30.69 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 7.20 Total: 9.08 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -6.67 Total: -127.21 kcal Atomic # 8 Polarization: -31.55 SS G_CDS: -0.53 Total: -32.08 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -74.48 2.22 -72.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279045966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.526 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds