Wall clock time and date at job start Wed Apr 1 2020 04:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47123 * 2 1 4 4 C 1.50705 * 109.46929 * 119.99483 * 2 1 3 5 5 C 1.38352 * 119.46292 * 274.99917 * 4 2 1 6 6 C 1.38355 * 119.30457 * 180.02562 * 5 4 2 7 7 C 1.40023 * 118.28536 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.55528 * 179.97438 * 7 6 5 9 9 O 1.21553 * 120.00179 * 312.05100 * 8 7 6 10 10 N 1.34779 * 120.00087 * 132.32753 * 8 7 6 11 11 C 1.47157 * 120.97775 * 3.50286 * 10 8 7 12 12 C 1.53300 * 108.38374 * 230.51309 * 11 10 8 13 13 O 1.42958 * 109.22253 * 307.70280 * 12 11 10 14 14 C 1.42960 * 114.17055 * 62.58191 * 13 12 11 15 15 H 1.09000 * 109.51125 * 57.33633 * 14 13 12 16 16 C 1.53001 * 109.51484 * 177.44685 * 14 13 12 17 17 H 1.09004 * 109.46924 * 185.00361 * 16 14 13 18 18 C 1.52998 * 109.46531 * 304.99568 * 16 14 13 19 19 N 1.46492 * 109.47368 * 64.99770 * 16 14 13 20 20 C 1.36938 * 120.00023 * 155.00349 * 19 16 14 21 21 H 1.07996 * 119.99744 * 359.97438 * 20 19 16 22 22 C 1.38811 * 119.99735 * 179.97438 * 20 19 16 23 23 N 1.31617 * 120.00616 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99605 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47199 * 0.02562 * 24 22 20 26 26 H 1.48496 * 109.46926 * 120.00078 * 24 22 20 27 27 H 1.48503 * 109.46926 * 239.99978 * 24 22 20 28 28 C 1.47148 * 120.98544 * 183.22661 * 10 8 7 29 29 C 1.39513 * 118.88647 * 0.24541 * 7 6 5 30 30 N 1.31702 * 120.56506 * 359.48020 * 29 7 6 31 31 H 1.09004 * 109.46784 * 300.00780 * 1 2 3 32 32 H 1.09004 * 109.46919 * 60.00116 * 1 2 3 33 33 H 1.08989 * 109.47438 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.47178 * 239.99810 * 2 1 3 35 35 H 1.09005 * 109.46997 * 179.97438 * 3 2 1 36 36 H 1.09004 * 109.47129 * 299.99755 * 3 2 1 37 37 H 1.08998 * 109.47249 * 59.99854 * 3 2 1 38 38 H 1.07998 * 120.34690 * 0.02562 * 5 4 2 39 39 H 1.08003 * 120.85721 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.68414 * 350.24015 * 11 10 8 41 41 H 1.09002 * 109.67957 * 110.75534 * 11 10 8 42 42 H 1.09001 * 109.51266 * 67.62563 * 12 11 10 43 43 H 1.09000 * 109.51041 * 187.72746 * 12 11 10 44 44 H 1.08999 * 109.47674 * 299.99878 * 18 16 14 45 45 H 1.08994 * 109.47332 * 60.00519 * 18 16 14 46 46 H 1.09004 * 109.46731 * 180.02562 * 18 16 14 47 47 H 0.97000 * 120.00066 * 335.00076 * 19 16 14 48 48 H 0.96998 * 120.00379 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.68093 * 249.20979 * 28 10 8 50 50 H 1.08997 * 109.68065 * 9.76052 * 28 10 8 51 51 H 1.08002 * 119.72510 * 179.72619 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1602 -0.0093 2.4165 6 6 2.6221 -0.6645 3.5441 7 6 2.9446 -2.0229 3.4367 8 6 3.4432 -2.7719 4.6098 9 8 4.3339 -2.3071 5.2941 10 7 2.9139 -3.9727 4.9173 11 6 1.8933 -4.5931 4.0578 12 6 0.7120 -5.0165 4.9384 13 8 1.1954 -5.8105 6.0245 14 6 2.0882 -5.1202 6.9022 15 1 1.5944 -4.2338 7.3003 16 6 2.4877 -6.0438 8.0547 17 1 3.0963 -5.4902 8.7697 18 6 1.2287 -6.5637 8.7514 19 7 3.2577 -7.1743 7.5301 20 6 4.1394 -7.8375 8.3413 21 1 4.2674 -7.5268 9.3676 22 6 4.8686 -8.9090 7.8443 23 7 4.7129 -9.2873 6.5933 24 14 6.0719 -9.8132 8.9507 25 1 6.0617 -9.1965 10.3016 26 1 5.6723 -11.2396 9.0553 27 1 7.4377 -9.7227 8.3749 28 6 3.3440 -4.7047 6.1192 29 6 2.7929 -2.6561 2.2029 30 7 2.3442 -1.9902 1.1590 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0275 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 1.9021 1.0385 2.4615 39 1 2.7312 -0.1417 4.4828 40 1 1.5556 -3.8742 3.3113 41 1 2.3137 -5.4677 3.5613 42 1 0.2132 -4.1297 5.3295 43 1 0.0068 -5.5995 4.3459 44 1 0.6558 -5.7226 9.1418 45 1 0.6201 -7.1173 8.0365 46 1 1.5133 -7.2214 9.5728 47 1 3.1429 -7.4531 6.6082 48 1 5.2222 -10.0363 6.2462 49 1 3.9079 -5.5907 5.8272 50 1 3.9674 -4.0598 6.7384 51 1 3.0419 -3.7024 2.1038 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282914888.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:25 Heat of formation + Delta-G solvation = -48.512415 kcal Electronic energy + Delta-G solvation = -31164.922765 eV Core-core repulsion = 27063.972329 eV Total energy + Delta-G solvation = -4100.950436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.12888 -40.93447 -39.56893 -37.16792 -36.57322 -35.84236 -34.17776 -33.68955 -32.13699 -31.22044 -30.12130 -28.92067 -28.03602 -26.20325 -25.61665 -25.20906 -24.36028 -23.66142 -21.70599 -21.20788 -20.72691 -19.38335 -18.81461 -17.99977 -17.50767 -17.38661 -17.09786 -16.75157 -16.28122 -16.04324 -15.82344 -15.71977 -15.43574 -15.14750 -15.08031 -14.86663 -14.75443 -14.23798 -14.20514 -14.02077 -13.83606 -13.68383 -13.48188 -13.11883 -13.00106 -12.84479 -12.79246 -12.58863 -12.49454 -12.22130 -12.12997 -12.05888 -11.91580 -11.81526 -11.69584 -11.63840 -11.25006 -11.09856 -10.99601 -10.95549 -10.50660 -10.05257 -9.68084 -8.95232 -7.90084 -5.17106 -0.37721 0.11275 1.42891 1.47786 1.48165 1.57708 1.67522 2.57649 2.58136 2.76641 3.00256 3.30725 3.44204 3.57809 3.64722 3.70436 3.90794 3.91751 3.92534 3.96487 4.09214 4.12896 4.16602 4.26041 4.26489 4.29011 4.47962 4.51586 4.60568 4.65325 4.72481 4.76073 4.83603 4.83897 4.88083 4.89435 4.98242 5.01129 5.04321 5.10135 5.17958 5.22932 5.25502 5.38776 5.42543 5.51793 5.55020 5.62375 6.13726 6.23250 6.32045 6.76938 6.85824 7.38915 8.14299 8.39324 9.33288 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.002315 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.133349 B =12093.626590 C =12419.806059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C -0.147 4.147 4 C 0.148 3.852 5 C -0.162 4.162 6 C -0.027 4.027 7 C -0.195 4.195 8 C 0.563 3.437 9 O -0.575 6.575 10 N -0.601 5.601 11 C 0.063 3.937 12 C 0.045 3.955 13 O -0.380 6.380 14 C 0.093 3.907 15 H 0.079 0.921 16 C 0.173 3.827 17 H 0.061 0.939 18 C -0.147 4.147 19 N -0.726 5.726 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.076 4.076 23 N -0.967 5.967 24 Si 0.966 3.034 25 H -0.266 1.266 26 H -0.296 1.296 27 H -0.298 1.298 28 C 0.096 3.904 29 C 0.132 3.868 30 N -0.498 5.498 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.175 0.825 39 H 0.149 0.851 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.046 0.954 46 H 0.038 0.962 47 H 0.377 0.623 48 H 0.248 0.752 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.342 23.584 -13.322 30.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.068 4.068 3 C -0.204 4.204 4 C 0.011 3.989 5 C -0.181 4.181 6 C -0.053 4.053 7 C -0.200 4.200 8 C 0.352 3.648 9 O -0.455 6.455 10 N -0.333 5.333 11 C -0.059 4.059 12 C -0.032 4.032 13 O -0.299 6.299 14 C 0.034 3.966 15 H 0.097 0.903 16 C 0.064 3.936 17 H 0.079 0.921 18 C -0.207 4.207 19 N -0.367 5.367 20 C -0.364 4.364 21 H 0.094 0.906 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.797 3.203 25 H -0.191 1.191 26 H -0.223 1.223 27 H -0.225 1.225 28 C -0.027 4.027 29 C -0.026 4.026 30 N -0.206 5.206 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.192 0.808 39 H 0.167 0.833 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.147 0.853 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.210 0.790 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.101 0.899 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.931 23.157 -13.556 29.787 hybrid contribution 1.337 -0.731 1.091 1.874 sum -11.594 22.427 -12.465 28.156 Atomic orbital electron populations 1.21793 0.92249 1.02096 1.03445 1.20208 0.97145 0.96176 0.93297 1.21949 1.01057 0.93550 1.03869 1.22002 0.91476 0.89354 0.96069 1.22244 1.01057 1.03134 0.91701 1.21814 0.91685 0.91401 1.00440 1.20743 1.07578 0.96652 0.95035 1.18583 0.81340 0.80528 0.84382 1.90774 1.31396 1.69523 1.53841 1.48192 1.40878 1.18435 1.25816 1.22945 0.89300 0.99526 0.94125 1.23166 0.94845 0.96839 0.88314 1.88075 1.63063 1.39400 1.39362 1.22716 0.88668 0.95043 0.90196 0.90302 1.20512 0.92430 0.88230 0.92458 0.92139 1.22143 0.98042 1.00736 0.99760 1.42523 1.46913 1.35020 1.12270 1.19650 1.13707 1.08646 0.94394 0.90595 1.25469 1.02964 1.00754 0.97646 1.69825 1.46225 1.30495 1.15267 0.85165 0.78439 0.78108 0.78626 1.19059 1.22334 1.22536 1.22226 0.97803 0.96114 0.86552 1.23089 0.92529 1.00242 0.86731 1.67622 1.12423 1.09707 1.30884 0.91671 0.90116 0.93377 0.89690 0.92973 0.90187 0.90771 0.80763 0.83279 0.86586 0.90033 0.91570 0.85291 0.91432 0.93513 0.94315 0.79039 0.94309 0.91762 0.89909 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.18 71.98 0.66 -0.51 16 2 C -0.05 -0.53 3.23 -11.54 -0.04 -0.57 16 3 C -0.15 -1.01 8.61 71.98 0.62 -0.39 16 4 C 0.15 2.40 5.79 42.57 0.25 2.64 16 5 C -0.16 -2.28 9.16 22.32 0.20 -2.08 16 6 C -0.03 -0.52 9.88 22.73 0.22 -0.29 16 7 C -0.19 -4.61 5.08 -19.99 -0.10 -4.71 16 8 C 0.56 17.36 7.30 86.79 0.63 17.99 16 9 O -0.58 -22.29 16.51 -3.88 -0.06 -22.35 16 10 N -0.60 -17.95 3.01 -819.92 -2.47 -20.42 16 11 C 0.06 1.45 5.40 86.35 0.47 1.92 16 12 C 0.05 1.02 6.99 72.08 0.50 1.52 16 13 O -0.38 -12.27 9.24 -148.98 -1.38 -13.65 16 14 C 0.09 3.08 2.59 30.84 0.08 3.16 16 15 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 16 C 0.17 6.77 2.81 44.99 0.13 6.89 16 17 H 0.06 2.36 8.08 -2.39 -0.02 2.34 16 18 C -0.15 -5.24 9.29 71.98 0.67 -4.57 16 19 N -0.73 -36.30 4.25 -322.96 -1.37 -37.67 16 20 C -0.23 -12.84 9.93 84.03 0.83 -12.00 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 23 N -0.97 -59.79 13.06 21.65 0.28 -59.50 16 24 Si 0.97 47.02 29.55 68.60 2.03 49.05 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 27 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 28 C 0.10 3.47 5.82 86.50 0.50 3.97 16 29 C 0.13 2.86 8.56 85.02 0.73 3.59 16 30 N -0.50 -10.31 10.25 -182.81 -1.87 -12.19 16 31 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 32 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.07 0.32 6.48 -2.39 -0.02 0.31 16 38 H 0.18 1.28 6.29 -2.91 -0.02 1.26 16 39 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 40 H 0.12 2.12 4.67 -2.39 -0.01 2.11 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.05 1.76 7.56 -2.39 -0.02 1.74 16 46 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 47 H 0.38 20.58 7.07 -92.71 -0.66 19.93 16 48 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 49 H 0.06 2.82 6.94 -2.38 -0.02 2.80 16 50 H 0.08 3.20 7.11 -2.39 -0.02 3.18 16 51 H 0.17 3.38 6.86 -2.91 -0.02 3.36 16 Total: -1.00 -73.42 405.28 2.26 -71.16 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: 0.28 Total: 32.92 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 6.83 Total: 12.63 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.44 Total: -129.77 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.44 Total: -36.00 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -73.42 2.26 -71.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282914888.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.651 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds