Wall clock time and date at job start Wed Apr 1 2020 04:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.50700 * 109.47296 * 119.99902 * 2 1 3 5 5 C 1.38345 * 119.46218 * 274.99943 * 4 2 1 6 6 C 1.38362 * 119.30658 * 180.02562 * 5 4 2 7 7 C 1.40023 * 118.28507 * 359.97438 * 6 5 4 8 8 C 1.47836 * 120.55963 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00199 * 48.60624 * 8 7 6 10 10 N 1.34781 * 120.00184 * 228.60792 * 8 7 6 11 11 C 1.47155 * 120.98148 * 176.22474 * 10 8 7 12 12 C 1.53296 * 108.41352 * 230.53879 * 11 10 8 13 13 O 1.42959 * 109.22372 * 307.68313 * 12 11 10 14 14 C 1.42963 * 114.17013 * 62.57757 * 13 12 11 15 15 H 1.09004 * 109.51032 * 57.34592 * 14 13 12 16 16 C 1.52998 * 109.51397 * 177.49377 * 14 13 12 17 17 H 1.09004 * 109.47279 * 175.00303 * 16 14 13 18 18 C 1.52999 * 109.47034 * 55.00666 * 16 14 13 19 19 N 1.46497 * 109.47420 * 295.00129 * 16 14 13 20 20 C 1.36937 * 120.00091 * 204.99786 * 19 16 14 21 21 H 1.07995 * 120.00148 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99756 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00200 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47449 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47345 * 120.00146 * 24 22 20 27 27 H 1.48505 * 109.47226 * 240.00008 * 24 22 20 28 28 C 1.47225 * 121.02680 * 356.24775 * 10 8 7 29 29 C 1.39525 * 118.88062 * 0.27309 * 7 6 5 30 30 N 1.31689 * 120.56665 * 359.45706 * 29 7 6 31 31 H 1.08999 * 109.47806 * 60.00112 * 1 2 3 32 32 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47007 * 299.99932 * 1 2 3 34 34 H 1.08997 * 109.47161 * 240.00013 * 2 1 3 35 35 H 1.09008 * 109.47153 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47077 * 299.99972 * 3 2 1 37 37 H 1.08997 * 109.47065 * 59.99955 * 3 2 1 38 38 H 1.08006 * 120.35037 * 359.97438 * 5 4 2 39 39 H 1.07997 * 120.85562 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.67869 * 110.80285 * 11 10 8 41 41 H 1.09000 * 109.68161 * 350.28193 * 11 10 8 42 42 H 1.09000 * 109.50902 * 67.60232 * 12 11 10 43 43 H 1.08993 * 109.51260 * 187.75354 * 12 11 10 44 44 H 1.08996 * 109.47063 * 180.02562 * 18 16 14 45 45 H 1.09001 * 109.46462 * 299.99542 * 18 16 14 46 46 H 1.08997 * 109.47221 * 59.99418 * 18 16 14 47 47 H 0.96998 * 119.99849 * 25.00280 * 19 16 14 48 48 H 0.97000 * 119.99843 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.67173 * 9.73076 * 28 10 8 50 50 H 1.09006 * 109.67110 * 249.19468 * 28 10 8 51 51 H 1.07999 * 119.71207 * 179.72633 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1601 -0.0094 2.4163 6 6 2.6222 -0.6647 3.5439 7 6 2.9437 -2.0233 3.4368 8 6 3.4412 -2.7727 4.6100 9 8 2.8568 -2.6956 5.6731 10 7 4.5429 -3.5415 4.5010 11 6 5.1045 -4.2310 5.6734 12 6 6.6037 -3.9195 5.7463 13 8 7.2082 -4.2173 4.4855 14 6 6.7145 -3.4301 3.3991 15 1 6.8565 -2.3725 3.6218 16 6 7.4736 -3.7904 2.1205 17 1 7.0380 -3.2557 1.2764 18 6 7.3737 -5.2974 1.8757 19 7 8.8812 -3.4113 2.2649 20 6 9.6369 -3.1481 1.1536 21 1 9.1951 -3.2197 0.1708 22 6 10.9706 -2.7884 1.2906 23 7 11.5090 -2.7006 2.4884 24 14 12.0013 -2.4287 -0.2252 25 1 11.1671 -2.5961 -1.4423 26 1 12.5070 -1.0340 -0.1605 27 1 13.1491 -3.3695 -0.2781 28 6 5.2210 -3.7165 3.2060 29 6 2.7915 -2.6566 2.2029 30 7 2.3429 -1.9906 1.1592 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.9028 1.0386 2.4613 39 1 2.7313 -0.1420 4.4827 40 1 4.9576 -5.3063 5.5721 41 1 4.6115 -3.8768 6.5787 42 1 6.7452 -2.8637 5.9775 43 1 7.0647 -4.5282 6.5240 44 1 7.9148 -5.5542 0.9651 45 1 7.8093 -5.8321 2.7198 46 1 6.3264 -5.5795 1.7683 47 1 9.2780 -3.3467 3.1477 48 1 12.4410 -2.4496 2.5840 49 1 4.8050 -3.0210 2.4770 50 1 5.0857 -4.7400 2.8563 51 1 3.0398 -3.7030 2.1041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282914889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:30 Heat of formation + Delta-G solvation = -28.119220 kcal Electronic energy + Delta-G solvation = -31431.181252 eV Core-core repulsion = 27331.115131 eV Total energy + Delta-G solvation = -4100.066121 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.20468 -39.94276 -38.43536 -35.93683 -35.43283 -34.71877 -32.86920 -32.53369 -31.14848 -30.04158 -28.51394 -27.55095 -27.26799 -25.10895 -24.87313 -23.88051 -23.20714 -22.46589 -20.93018 -19.84673 -19.65096 -17.88363 -17.34415 -16.97434 -16.61165 -16.37720 -15.96572 -15.45272 -15.25394 -14.91953 -14.82353 -14.54179 -14.29995 -14.18668 -14.11489 -13.49058 -13.42482 -13.25560 -13.13587 -13.03344 -12.82125 -12.56217 -12.40873 -12.20246 -12.01487 -11.59531 -11.51821 -11.37984 -11.30513 -11.17583 -10.89660 -10.78021 -10.65526 -10.40508 -10.22980 -10.16469 -9.95976 -9.87885 -9.69512 -9.62286 -9.21263 -8.92804 -8.57760 -6.96212 -5.75876 -3.04969 0.48207 0.94000 2.41375 2.68489 3.42848 3.43650 3.48566 3.50830 3.78235 3.94653 4.19728 4.29488 4.49814 4.54742 4.67316 4.73372 4.75953 4.81533 4.86789 4.90630 5.07851 5.15592 5.19389 5.22922 5.27581 5.34085 5.39943 5.46591 5.51662 5.52498 5.58240 5.59158 5.69581 5.71129 5.75576 5.81972 5.88980 5.90148 5.93529 5.96249 6.17463 6.21179 6.28947 6.41647 6.59863 6.77159 7.08886 7.14570 7.43067 7.61431 7.69855 7.86516 8.42034 9.54150 10.11270 10.47684 11.46490 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.003297 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.080107 B = 8490.800528 C =10821.661821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.150 4.150 4 C 0.154 3.846 5 C -0.173 4.173 6 C -0.022 4.022 7 C -0.185 4.185 8 C 0.569 3.431 9 O -0.537 6.537 10 N -0.604 5.604 11 C 0.078 3.922 12 C 0.047 3.953 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.063 0.937 16 C 0.185 3.815 17 H 0.058 0.942 18 C -0.163 4.163 19 N -0.719 5.719 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.067 3.933 29 C 0.137 3.863 30 N -0.480 5.480 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.053 0.947 43 H 0.106 0.894 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.034 0.966 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.096 0.904 50 H 0.089 0.911 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.278 3.699 0.867 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.207 4.207 4 C 0.017 3.983 5 C -0.193 4.193 6 C -0.049 4.049 7 C -0.190 4.190 8 C 0.356 3.644 9 O -0.414 6.414 10 N -0.337 5.337 11 C -0.044 4.044 12 C -0.031 4.031 13 O -0.274 6.274 14 C 0.017 3.983 15 H 0.081 0.919 16 C 0.075 3.925 17 H 0.076 0.924 18 C -0.223 4.223 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.578 5.578 24 Si 0.736 3.264 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.056 4.056 29 C -0.022 4.022 30 N -0.188 5.188 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.053 0.947 47 H 0.224 0.776 48 H 0.064 0.936 49 H 0.114 0.886 50 H 0.107 0.893 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -22.458 3.198 0.452 22.689 hybrid contribution 0.792 0.727 0.419 1.154 sum -21.666 3.925 0.872 22.036 Atomic orbital electron populations 1.21802 0.93394 1.02436 1.02238 1.20122 0.96280 0.95609 0.94931 1.21951 1.01799 0.94560 1.02421 1.21466 0.92317 0.89702 0.94800 1.21958 1.02392 1.01949 0.92957 1.21591 0.91836 0.92345 0.99088 1.20867 1.06354 0.96200 0.95618 1.18121 0.80038 0.78567 0.87652 1.90779 1.57120 1.64514 1.29032 1.48123 1.27109 1.47882 1.10593 1.22403 0.95172 0.97582 0.89219 1.22933 0.91138 1.01215 0.87846 1.88110 1.62746 1.61344 1.15243 1.22960 0.90615 0.95228 0.89529 0.91869 1.20189 0.87022 0.94001 0.91330 0.92427 1.22426 0.98694 0.99023 1.02178 1.42355 1.04736 1.81762 1.07184 1.19282 0.92097 1.38584 0.87127 0.91107 1.24743 0.97088 1.02571 0.96468 1.69688 1.13053 1.54563 1.20469 0.86147 0.80465 0.77517 0.82236 1.20533 1.21933 1.21868 1.22985 0.94339 1.03581 0.84725 1.23036 0.92390 1.00173 0.86581 1.67546 1.11532 1.08602 1.31162 0.91657 0.92221 0.92480 0.88771 0.91957 0.91600 0.92115 0.83861 0.84046 0.90345 0.88311 0.92859 0.87633 0.92794 0.92342 0.94697 0.77639 0.93589 0.88630 0.89300 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.17 37.15 0.34 -0.59 16 2 C -0.05 -0.40 3.23 -91.78 -0.30 -0.69 16 3 C -0.15 -0.97 8.61 37.16 0.32 -0.65 16 4 C 0.15 1.58 5.79 -82.51 -0.48 1.10 16 5 C -0.17 -1.62 9.16 -39.50 -0.36 -1.98 16 6 C -0.02 -0.24 9.88 -38.87 -0.38 -0.63 16 7 C -0.19 -2.25 5.08 -104.82 -0.53 -2.78 16 8 C 0.57 7.80 7.30 -12.33 -0.09 7.71 16 9 O -0.54 -8.74 16.52 5.32 0.09 -8.65 16 10 N -0.60 -7.78 3.02 -173.33 -0.52 -8.30 16 11 C 0.08 0.93 6.62 -3.53 -0.02 0.91 16 12 C 0.05 0.61 6.99 37.31 0.26 0.87 16 13 O -0.36 -5.94 9.24 -35.23 -0.33 -6.27 16 14 C 0.08 1.24 2.61 -26.58 -0.07 1.17 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.19 3.55 2.77 -67.93 -0.19 3.36 16 17 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 18 C -0.16 -2.88 9.06 37.16 0.34 -2.54 16 19 N -0.72 -17.84 5.10 -53.43 -0.27 -18.12 16 20 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 24 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.07 0.86 4.61 -3.50 -0.02 0.84 16 29 C 0.14 1.57 8.56 -17.13 -0.15 1.43 16 30 N -0.48 -5.70 10.25 -9.14 -0.09 -5.79 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.33 6.48 -51.93 -0.34 -0.01 16 38 H 0.14 0.96 6.29 -52.48 -0.33 0.63 16 39 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.10 1.16 7.11 -51.93 -0.37 0.79 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.10 7.56 -51.93 -0.39 0.71 16 46 H 0.03 0.49 6.41 -51.93 -0.33 0.16 16 47 H 0.39 10.52 7.58 -40.82 -0.31 10.21 16 48 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.10 1.17 4.68 -51.93 -0.24 0.92 16 50 H 0.09 1.06 6.26 -51.93 -0.33 0.73 16 51 H 0.16 1.62 6.89 -52.49 -0.36 1.26 16 LS Contribution 404.05 15.07 6.09 6.09 Total: -1.00 -33.19 404.05 -8.95 -42.14 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -8.04 Total: 8.66 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.57 Total: 0.36 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.17 Total: -59.54 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.24 Total: -14.92 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.19 -8.95 -42.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282914889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.020 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds