Wall clock time and date at job start Wed Apr 1 2020 04:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53002 * 109.47176 * 2 1 4 4 C 1.50700 * 109.47296 * 119.99902 * 2 1 3 5 5 C 1.38345 * 119.46218 * 274.99943 * 4 2 1 6 6 C 1.38362 * 119.30658 * 180.02562 * 5 4 2 7 7 C 1.40023 * 118.28507 * 359.97438 * 6 5 4 8 8 C 1.47836 * 120.55963 * 180.02562 * 7 6 5 9 9 O 1.21555 * 120.00199 * 48.60624 * 8 7 6 10 10 N 1.34781 * 120.00184 * 228.60792 * 8 7 6 11 11 C 1.47155 * 120.98148 * 176.22474 * 10 8 7 12 12 C 1.53296 * 108.41352 * 230.53879 * 11 10 8 13 13 O 1.42959 * 109.22372 * 307.68313 * 12 11 10 14 14 C 1.42963 * 114.17013 * 62.57757 * 13 12 11 15 15 H 1.09004 * 109.51032 * 57.34592 * 14 13 12 16 16 C 1.52998 * 109.51397 * 177.49377 * 14 13 12 17 17 H 1.09004 * 109.47279 * 175.00303 * 16 14 13 18 18 C 1.52999 * 109.47034 * 55.00666 * 16 14 13 19 19 N 1.46497 * 109.47420 * 295.00129 * 16 14 13 20 20 C 1.36937 * 120.00091 * 204.99786 * 19 16 14 21 21 H 1.07995 * 120.00148 * 0.02562 * 20 19 16 22 22 C 1.38817 * 119.99756 * 179.97438 * 20 19 16 23 23 N 1.31618 * 120.00200 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99775 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47449 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47345 * 120.00146 * 24 22 20 27 27 H 1.48505 * 109.47226 * 240.00008 * 24 22 20 28 28 C 1.47225 * 121.02680 * 356.24775 * 10 8 7 29 29 C 1.39525 * 118.88062 * 0.27309 * 7 6 5 30 30 N 1.31689 * 120.56665 * 359.45706 * 29 7 6 31 31 H 1.08999 * 109.47806 * 60.00112 * 1 2 3 32 32 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.47007 * 299.99932 * 1 2 3 34 34 H 1.08997 * 109.47161 * 240.00013 * 2 1 3 35 35 H 1.09008 * 109.47153 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47077 * 299.99972 * 3 2 1 37 37 H 1.08997 * 109.47065 * 59.99955 * 3 2 1 38 38 H 1.08006 * 120.35037 * 359.97438 * 5 4 2 39 39 H 1.07997 * 120.85562 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.67869 * 110.80285 * 11 10 8 41 41 H 1.09000 * 109.68161 * 350.28193 * 11 10 8 42 42 H 1.09000 * 109.50902 * 67.60232 * 12 11 10 43 43 H 1.08993 * 109.51260 * 187.75354 * 12 11 10 44 44 H 1.08996 * 109.47063 * 180.02562 * 18 16 14 45 45 H 1.09001 * 109.46462 * 299.99542 * 18 16 14 46 46 H 1.08997 * 109.47221 * 59.99418 * 18 16 14 47 47 H 0.96998 * 119.99849 * 25.00280 * 19 16 14 48 48 H 0.97000 * 119.99843 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.67173 * 9.73076 * 28 10 8 50 50 H 1.09006 * 109.67110 * 249.19468 * 28 10 8 51 51 H 1.07999 * 119.71207 * 179.72633 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.1601 -0.0094 2.4163 6 6 2.6222 -0.6647 3.5439 7 6 2.9437 -2.0233 3.4368 8 6 3.4412 -2.7727 4.6100 9 8 2.8568 -2.6956 5.6731 10 7 4.5429 -3.5415 4.5010 11 6 5.1045 -4.2310 5.6734 12 6 6.6037 -3.9195 5.7463 13 8 7.2082 -4.2173 4.4855 14 6 6.7145 -3.4301 3.3991 15 1 6.8565 -2.3725 3.6218 16 6 7.4736 -3.7904 2.1205 17 1 7.0380 -3.2557 1.2764 18 6 7.3737 -5.2974 1.8757 19 7 8.8812 -3.4113 2.2649 20 6 9.6369 -3.1481 1.1536 21 1 9.1951 -3.2197 0.1708 22 6 10.9706 -2.7884 1.2906 23 7 11.5090 -2.7006 2.4884 24 14 12.0013 -2.4287 -0.2252 25 1 11.1671 -2.5961 -1.4423 26 1 12.5070 -1.0340 -0.1605 27 1 13.1491 -3.3695 -0.2781 28 6 5.2210 -3.7165 3.2060 29 6 2.7915 -2.6566 2.2029 30 7 2.3429 -1.9906 1.1592 31 1 -0.3635 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9563 -0.8899 37 1 1.6766 1.9563 0.8900 38 1 1.9028 1.0386 2.4613 39 1 2.7313 -0.1420 4.4827 40 1 4.9576 -5.3063 5.5721 41 1 4.6115 -3.8768 6.5787 42 1 6.7452 -2.8637 5.9775 43 1 7.0647 -4.5282 6.5240 44 1 7.9148 -5.5542 0.9651 45 1 7.8093 -5.8321 2.7198 46 1 6.3264 -5.5795 1.7683 47 1 9.2780 -3.3467 3.1477 48 1 12.4410 -2.4496 2.5840 49 1 4.8050 -3.0210 2.4770 50 1 5.0857 -4.7400 2.8563 51 1 3.0398 -3.7030 2.1041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282914889.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:29 Heat of formation + Delta-G solvation = -49.635431 kcal Electronic energy + Delta-G solvation = -31432.114265 eV Core-core repulsion = 27331.115131 eV Total energy + Delta-G solvation = -4100.999134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.14552 -40.93463 -39.62822 -37.06052 -36.63003 -35.84874 -34.33035 -33.68644 -32.27042 -31.35522 -29.92495 -28.54610 -28.05371 -26.44787 -25.96361 -25.08774 -24.38955 -23.61574 -21.72546 -21.16957 -20.73376 -19.29708 -18.86017 -18.04525 -17.47818 -17.38759 -17.05199 -16.80360 -16.48898 -16.11384 -15.85053 -15.77367 -15.39269 -15.26667 -15.06050 -14.84382 -14.56445 -14.35607 -14.21528 -13.99892 -13.83335 -13.72687 -13.54060 -13.19577 -12.99522 -12.89131 -12.85501 -12.46283 -12.41935 -12.22990 -12.12712 -12.07654 -11.96134 -11.87088 -11.64779 -11.60324 -11.33204 -11.11440 -10.99331 -10.93800 -10.50041 -10.04742 -9.68949 -8.99553 -7.91130 -5.19690 -0.36554 0.12834 1.37698 1.48657 1.49158 1.59078 1.67820 2.57389 2.60094 2.75283 2.99957 3.27258 3.42718 3.51993 3.58802 3.69795 3.82050 3.91492 3.95914 4.00882 4.11530 4.13393 4.15717 4.26610 4.28704 4.31008 4.42353 4.51445 4.54613 4.59534 4.65587 4.73116 4.79727 4.81859 4.86395 4.87645 4.95071 4.99083 5.02802 5.11023 5.19424 5.21645 5.27149 5.36752 5.41368 5.51960 5.53708 5.65211 6.05376 6.20782 6.30516 6.77042 6.84157 7.36829 8.12813 8.36528 9.32607 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008759 B = 0.003297 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.080107 B = 8490.800528 C =10821.661821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.050 4.050 3 C -0.147 4.147 4 C 0.147 3.853 5 C -0.167 4.167 6 C -0.031 4.031 7 C -0.203 4.203 8 C 0.571 3.429 9 O -0.566 6.566 10 N -0.603 5.603 11 C 0.082 3.918 12 C 0.045 3.955 13 O -0.379 6.379 14 C 0.086 3.914 15 H 0.042 0.958 16 C 0.178 3.822 17 H 0.063 0.937 18 C -0.151 4.151 19 N -0.733 5.733 20 C -0.235 4.235 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.296 1.296 28 C 0.080 3.920 29 C 0.132 3.868 30 N -0.500 5.500 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.172 0.828 39 H 0.149 0.851 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.043 0.957 43 H 0.127 0.873 44 H 0.037 0.963 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.374 0.626 48 H 0.249 0.751 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.189 4.007 -0.303 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.069 4.069 3 C -0.205 4.205 4 C 0.010 3.990 5 C -0.186 4.186 6 C -0.057 4.057 7 C -0.208 4.208 8 C 0.360 3.640 9 O -0.446 6.446 10 N -0.335 5.335 11 C -0.040 4.040 12 C -0.032 4.032 13 O -0.298 6.298 14 C 0.026 3.974 15 H 0.060 0.940 16 C 0.069 3.931 17 H 0.081 0.919 18 C -0.211 4.211 19 N -0.373 5.373 20 C -0.367 4.367 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.223 1.223 27 H -0.223 1.223 28 C -0.043 4.043 29 C -0.026 4.026 30 N -0.208 5.208 31 H 0.100 0.900 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.092 0.908 38 H 0.189 0.811 39 H 0.167 0.833 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.062 0.938 43 H 0.145 0.855 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.206 0.794 48 H 0.058 0.942 49 H 0.122 0.878 50 H 0.125 0.875 51 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -24.418 3.486 -0.747 24.677 hybrid contribution 1.291 0.645 0.803 1.652 sum -23.127 4.131 0.055 23.493 Atomic orbital electron populations 1.21782 0.92277 1.02004 1.03400 1.20202 0.97104 0.96144 0.93473 1.21949 1.01041 0.93684 1.03803 1.21961 0.91562 0.89447 0.96008 1.22236 1.01246 1.03133 0.92004 1.21819 0.91743 0.92106 1.00008 1.20849 1.07753 0.96846 0.95323 1.18329 0.79816 0.78165 0.87671 1.90759 1.58111 1.65479 1.30288 1.48158 1.26846 1.47678 1.10823 1.22436 0.94034 0.98445 0.89083 1.23107 0.92068 1.01195 0.86816 1.88070 1.63887 1.61382 1.16434 1.22655 0.92375 0.93933 0.88425 0.94045 1.20433 0.84481 0.95017 0.93157 0.91900 1.22247 1.00991 0.97191 1.00649 1.42555 1.06905 1.82083 1.05803 1.19686 0.92411 1.36475 0.88146 0.90302 1.25542 0.98547 1.03772 0.99105 1.69849 1.12966 1.56701 1.22580 0.85119 0.78681 0.76677 0.79589 1.18774 1.22278 1.22349 1.22851 0.91651 1.04789 0.84970 1.23199 0.92337 1.00735 0.86286 1.67592 1.12281 1.09565 1.31370 0.90031 0.93442 0.91797 0.89637 0.93112 0.90212 0.90809 0.81099 0.83323 0.88667 0.88056 0.93816 0.85486 0.94385 0.93744 0.90622 0.79388 0.94230 0.87801 0.87504 0.80836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.17 71.98 0.66 -0.87 16 2 C -0.05 -0.70 3.23 -11.54 -0.04 -0.74 16 3 C -0.15 -1.55 8.61 71.98 0.62 -0.93 16 4 C 0.15 2.79 5.79 42.57 0.25 3.03 16 5 C -0.17 -2.81 9.16 22.32 0.20 -2.60 16 6 C -0.03 -0.63 9.88 22.73 0.22 -0.40 16 7 C -0.20 -4.73 5.08 -19.99 -0.10 -4.83 16 8 C 0.57 15.18 7.30 86.78 0.63 15.82 16 9 O -0.57 -18.13 16.52 -3.89 -0.06 -18.20 16 10 N -0.60 -14.75 3.02 -820.56 -2.48 -17.23 16 11 C 0.08 1.83 6.62 86.35 0.57 2.40 16 12 C 0.05 1.15 6.99 72.08 0.50 1.65 16 13 O -0.38 -12.49 9.24 -148.98 -1.38 -13.86 16 14 C 0.09 2.74 2.61 30.69 0.08 2.82 16 15 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 16 C 0.18 6.71 2.77 44.99 0.12 6.84 16 17 H 0.06 2.31 8.08 -2.38 -0.02 2.29 16 18 C -0.15 -5.11 9.06 71.98 0.65 -4.46 16 19 N -0.73 -36.83 5.10 -322.94 -1.65 -38.48 16 20 C -0.24 -12.91 9.93 84.03 0.83 -12.08 16 21 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 24 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 28 C 0.08 1.93 4.61 86.34 0.40 2.33 16 29 C 0.13 2.89 8.56 85.02 0.73 3.62 16 30 N -0.50 -11.25 10.25 -182.82 -1.87 -13.13 16 31 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.58 6.48 -2.39 -0.02 0.56 16 38 H 0.17 1.81 6.29 -2.91 -0.02 1.79 16 39 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 2.27 7.11 -2.39 -0.02 2.25 16 42 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.04 1.62 7.56 -2.39 -0.02 1.61 16 46 H 0.08 1.92 6.41 -2.39 -0.02 1.90 16 47 H 0.37 20.80 7.58 -92.71 -0.70 20.10 16 48 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.10 2.37 4.68 -2.39 -0.01 2.36 16 50 H 0.11 2.21 6.26 -2.38 -0.01 2.20 16 51 H 0.17 3.17 6.89 -2.91 -0.02 3.15 16 Total: -1.00 -72.45 404.05 1.91 -70.54 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.24 Total: 34.31 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.81 Total: 7.60 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -5.72 Total: -128.47 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.44 Total: -32.06 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -72.45 1.91 -70.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282914889.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.905 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds