Wall clock time and date at job start Wed Apr 1 2020 04:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46933 * 2 1 4 4 N 1.46492 * 109.47241 * 239.99841 * 2 1 3 5 5 C 1.36939 * 120.00239 * 84.99872 * 4 2 1 6 6 H 1.08001 * 119.99951 * 0.02562 * 5 4 2 7 7 C 1.38809 * 120.00000 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00440 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99822 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46946 * 359.97438 * 9 7 5 11 11 H 1.48509 * 109.46874 * 119.99608 * 9 7 5 12 12 H 1.48496 * 109.47058 * 239.99644 * 9 7 5 13 13 C 1.53001 * 109.47116 * 119.99613 * 2 1 3 14 14 H 1.09001 * 109.51694 * 175.09896 * 13 2 1 15 15 C 1.53715 * 109.48644 * 295.36672 * 13 2 1 16 16 N 1.47153 * 108.16197 * 172.39795 * 15 13 2 17 17 C 1.34782 * 120.98198 * 129.42618 * 16 15 13 18 18 O 1.21590 * 119.99952 * 354.29100 * 17 16 15 19 19 C 1.47525 * 119.99780 * 174.28081 * 17 16 15 20 20 C 1.39794 * 120.07150 * 327.57126 * 19 17 16 21 21 C 1.37607 * 119.93032 * 179.97438 * 20 19 17 22 22 C 1.39217 * 120.06719 * 359.97438 * 21 20 19 23 23 N 1.39054 * 119.93205 * 180.02562 * 22 21 20 24 24 C 1.46502 * 119.99324 * 354.20740 * 23 22 21 25 25 C 1.46491 * 120.00482 * 173.93630 * 23 22 21 26 26 C 1.39217 * 120.14136 * 0.28750 * 22 21 20 27 27 C 1.37617 * 120.06754 * 359.45338 * 26 22 21 28 28 C 1.47151 * 118.03443 * 309.15690 * 16 15 13 29 29 C 1.53292 * 108.38740 * 50.78583 * 28 16 15 30 30 O 1.42965 * 109.22537 * 307.69938 * 29 28 16 31 31 H 1.08997 * 109.46639 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46879 * 300.00117 * 1 2 3 33 33 H 1.08998 * 109.46908 * 60.00058 * 1 2 3 34 34 H 0.97008 * 119.99832 * 265.00094 * 4 2 1 35 35 H 0.97000 * 120.00356 * 179.97438 * 8 7 5 36 36 H 1.08993 * 109.83706 * 52.71533 * 15 13 2 37 37 H 1.08998 * 109.74438 * 292.01996 * 15 13 2 38 38 H 1.07997 * 120.03150 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.96480 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.47851 * 5.05826 * 24 23 22 41 41 H 1.09004 * 109.46430 * 125.05785 * 24 23 22 42 42 H 1.08998 * 109.47185 * 245.04868 * 24 23 22 43 43 H 1.09006 * 109.47353 * 89.99377 * 25 23 22 44 44 H 1.09001 * 109.47422 * 210.00122 * 25 23 22 45 45 H 1.09006 * 109.47008 * 329.99914 * 25 23 22 46 46 H 1.07998 * 119.96891 * 179.70794 * 26 22 21 47 47 H 1.07994 * 120.03765 * 180.26580 * 27 26 22 48 48 H 1.09005 * 109.68259 * 170.51055 * 28 16 15 49 49 H 1.09004 * 109.68200 * 291.05990 * 28 16 15 50 50 H 1.09001 * 109.51120 * 67.61759 * 29 28 16 51 51 H 1.08996 * 109.51754 * 187.72193 * 29 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0404 -2.4242 7 6 2.6114 -0.6621 -3.5092 8 7 2.9245 -1.9391 -3.4501 9 14 2.7905 0.2699 -5.1181 10 1 2.3765 1.6823 -4.9207 11 1 4.2075 0.2261 -5.5605 12 1 1.9294 -0.3579 -6.1523 13 6 2.0401 -0.7212 1.2493 14 1 3.1265 -0.7982 1.2073 15 6 1.6257 0.0677 2.5018 16 7 1.9667 -0.7380 3.6850 17 6 2.6702 -0.2087 4.7056 18 8 3.1219 0.9164 4.6136 19 6 2.8920 -0.9945 5.9343 20 6 1.9233 -1.9042 6.3684 21 6 2.1334 -2.6359 7.5147 22 6 3.3093 -2.4715 8.2415 23 7 3.5189 -3.2128 9.3991 24 6 2.4528 -4.0705 9.9226 25 6 4.8077 -3.1408 10.0919 26 6 4.2735 -1.5624 7.8148 27 6 4.0717 -0.8315 6.6664 28 6 1.5117 -2.1369 3.7237 29 6 1.9270 -2.8168 2.4141 30 8 1.4705 -2.0311 1.3104 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 2.2491 -1.6318 -1.1525 35 1 3.2471 -2.3966 -4.2422 36 1 0.5522 0.2553 2.4824 37 1 2.1639 1.0149 2.5352 38 1 1.0111 -2.0324 5.8047 39 1 1.3852 -3.3386 7.8508 40 1 1.6113 -4.0682 9.2298 41 1 2.8276 -5.0879 10.0355 42 1 2.1265 -3.6939 10.8920 43 1 4.7796 -2.3383 10.8290 44 1 5.0040 -4.0883 10.5935 45 1 5.5984 -2.9420 9.3684 46 1 5.1827 -1.4337 8.3833 47 1 4.8219 -0.1296 6.3335 48 1 1.9744 -2.6503 4.5667 49 1 0.4269 -2.1674 3.8253 50 1 3.0130 -2.9014 2.3762 51 1 1.4824 -3.8107 2.3629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282929188.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:51 Heat of formation + Delta-G solvation = -2.630026 kcal Electronic energy + Delta-G solvation = -30816.882916 eV Core-core repulsion = 26717.922089 eV Total energy + Delta-G solvation = -4098.960827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.77862 -39.58234 -38.25021 -36.41548 -35.46693 -34.49854 -32.50016 -31.62601 -30.83311 -29.99534 -28.66149 -28.42193 -27.23994 -25.58798 -24.62234 -23.57765 -22.72302 -22.48385 -21.28393 -19.71765 -19.55202 -17.84800 -17.37714 -17.07183 -16.52306 -16.05112 -15.82437 -15.59452 -15.26592 -15.21241 -15.00568 -14.50271 -14.39076 -14.11514 -13.99541 -13.81983 -13.31252 -13.24209 -13.07537 -12.98860 -12.77059 -12.60085 -12.56896 -12.41860 -12.29437 -12.03113 -11.82799 -11.28530 -11.12544 -11.05813 -10.81333 -10.67917 -10.46872 -10.23615 -10.20854 -9.97616 -9.75905 -9.69957 -9.59615 -9.22649 -8.85589 -8.40947 -7.69918 -6.88309 -5.69269 -2.97679 0.88771 1.13806 2.62652 2.75696 2.92217 3.47850 3.53460 3.55686 3.64157 4.05403 4.34432 4.42627 4.47971 4.62895 4.64677 4.80144 4.82109 4.85578 4.95493 5.06586 5.07673 5.10215 5.16502 5.21000 5.24367 5.27709 5.31207 5.40782 5.50682 5.64052 5.71998 5.74802 5.78945 5.82855 5.86648 6.00234 6.04132 6.07120 6.20161 6.28207 6.39701 6.49679 6.52539 6.70864 6.73555 6.87997 7.01026 7.21329 7.37803 7.54714 7.76720 8.17866 8.49015 9.60875 10.19097 10.55760 11.53298 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023646 B = 0.002026 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.845744 B =13815.527639 C =13917.913388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.184 3.816 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.237 4.237 6 H 0.071 0.929 7 C -0.015 4.015 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C 0.077 3.923 14 H 0.064 0.936 15 C 0.083 3.917 16 N -0.610 5.610 17 C 0.565 3.435 18 O -0.542 6.542 19 C -0.191 4.191 20 C -0.043 4.043 21 C -0.210 4.210 22 C 0.236 3.764 23 N -0.633 5.633 24 C 0.086 3.914 25 C 0.090 3.910 26 C -0.207 4.207 27 C -0.011 4.011 28 C 0.060 3.940 29 C 0.045 3.955 30 O -0.359 6.359 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.389 0.611 35 H 0.253 0.747 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.054 0.946 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.053 0.947 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.129 -6.041 30.904 31.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.368 4.368 6 H 0.089 0.911 7 C -0.211 4.211 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C 0.017 3.983 14 H 0.082 0.918 15 C -0.039 4.039 16 N -0.343 5.343 17 C 0.355 3.645 18 O -0.420 6.420 19 C -0.196 4.196 20 C -0.062 4.062 21 C -0.232 4.232 22 C 0.133 3.867 23 N -0.343 5.343 24 C -0.057 4.057 25 C -0.053 4.053 26 C -0.229 4.229 27 C -0.031 4.031 28 C -0.063 4.063 29 C -0.033 4.033 30 O -0.277 6.277 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.223 0.777 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.145 0.855 47 H 0.150 0.850 48 H 0.121 0.879 49 H 0.095 0.905 50 H 0.071 0.929 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.970 -5.491 30.747 31.249 hybrid contribution 0.314 0.039 -0.625 0.700 sum -0.655 -5.452 30.123 30.619 Atomic orbital electron populations 1.22411 0.98679 1.01585 0.99511 1.20203 0.92800 0.94636 0.84995 0.92298 1.42363 1.77832 1.10971 1.04899 1.19305 1.36270 0.93869 0.87332 0.91104 1.24739 1.02333 0.95980 0.98020 1.69689 1.51004 1.08640 1.28615 0.86134 0.77230 0.78809 0.84132 1.20560 1.21971 1.21963 1.23045 0.97615 0.82967 0.94645 0.91840 1.22574 1.01696 0.95872 0.83785 1.48040 1.54899 1.12429 1.18928 1.18274 0.77388 0.86097 0.82722 1.90771 1.50131 1.19547 1.81587 1.19608 0.98177 1.03282 0.98560 1.21331 0.98202 0.92186 0.94506 1.20638 0.98460 1.06061 0.98075 1.18019 0.93608 0.89519 0.85575 1.46275 1.14620 1.47652 1.25735 1.21773 0.90885 0.93662 0.99411 1.21676 0.84680 1.01831 0.97069 1.20611 1.00815 1.01218 1.00268 1.20949 0.95277 0.95047 0.91790 1.23000 1.00438 0.82266 1.00586 1.22926 0.99540 0.95156 0.85658 1.88090 1.67707 1.25695 1.46188 0.92458 0.94664 0.92941 0.77688 0.93669 0.90129 0.88170 0.84679 0.85245 0.90079 0.92352 0.92743 0.93114 0.91349 0.91035 0.85454 0.85048 0.87856 0.90464 0.92880 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.06 37.16 0.34 -2.71 16 2 C 0.18 3.80 2.77 -67.93 -0.19 3.61 16 3 H 0.06 1.21 8.08 -51.93 -0.42 0.79 16 4 N -0.72 -18.61 5.10 -53.43 -0.27 -18.88 16 5 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 6 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 7 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 8 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 9 Si 0.91 22.84 29.55 -169.99 -5.02 17.81 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 C 0.08 1.37 2.62 -26.36 -0.07 1.30 16 14 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 15 C 0.08 1.28 5.85 -3.31 -0.02 1.26 16 16 N -0.61 -8.46 3.01 -173.25 -0.52 -8.98 16 17 C 0.57 8.43 7.42 -12.47 -0.09 8.34 16 18 O -0.54 -9.96 16.23 5.29 0.09 -9.87 16 19 C -0.19 -2.29 5.38 -104.95 -0.56 -2.85 16 20 C -0.04 -0.40 7.38 -39.23 -0.29 -0.69 16 21 C -0.21 -1.70 9.29 -39.45 -0.37 -2.07 16 22 C 0.24 2.00 6.53 -83.86 -0.55 1.45 16 23 N -0.63 -4.08 3.39 -187.55 -0.64 -4.72 16 24 C 0.09 0.36 10.61 59.85 0.64 1.00 16 25 C 0.09 0.41 10.07 59.84 0.60 1.01 16 26 C -0.21 -1.87 9.13 -39.44 -0.36 -2.23 16 27 C -0.01 -0.12 9.59 -39.23 -0.38 -0.50 16 28 C 0.06 0.65 4.88 -3.54 -0.02 0.64 16 29 C 0.05 0.59 6.98 37.31 0.26 0.85 16 30 O -0.36 -6.24 9.24 -35.23 -0.33 -6.57 16 31 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 32 H 0.03 0.55 6.42 -51.93 -0.33 0.22 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.39 10.86 7.58 -40.82 -0.31 10.55 16 35 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 1.16 6.28 -51.93 -0.33 0.84 16 37 H 0.10 1.64 7.06 -51.93 -0.37 1.27 16 38 H 0.14 1.07 5.66 -52.49 -0.30 0.78 16 39 H 0.13 0.76 5.71 -52.49 -0.30 0.46 16 40 H 0.08 0.30 5.28 -51.93 -0.27 0.03 16 41 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 45 H 0.07 0.31 6.46 -51.93 -0.34 -0.02 16 46 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 47 H 0.13 1.47 7.96 -52.49 -0.42 1.05 16 48 H 0.10 0.94 4.54 -51.93 -0.24 0.70 16 49 H 0.08 0.74 7.93 -51.93 -0.41 0.33 16 50 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -35.17 397.94 -8.95 -44.12 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -7.67 Total: 8.09 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.30 Total: 1.01 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.71 Total: -60.60 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.24 Total: -16.44 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.17 -8.95 -44.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282929188.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.492 kcal (2) G-P(sol) polarization free energy of solvation -35.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds