Wall clock time and date at job start Wed Apr 1 2020 04:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35736 * 116.99951 * 2 1 4 4 C 1.39291 * 120.84859 * 359.97438 * 3 2 1 5 5 C 1.37942 * 119.09378 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82460 * 359.97438 * 5 4 3 7 7 C 1.31945 * 121.86383 * 359.72809 * 6 5 4 8 8 C 1.37993 * 120.82301 * 0.53826 * 7 6 5 9 9 C 1.50697 * 120.45910 * 179.75306 * 8 7 6 10 10 C 1.50698 * 109.46865 * 264.71971 * 9 8 7 11 11 O 1.21278 * 120.00406 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00315 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47152 * 325.00591 * 13 12 10 15 15 C 1.53003 * 109.47048 * 85.00178 * 13 12 10 16 16 C 1.52996 * 109.47302 * 205.00394 * 13 12 10 17 17 H 1.09000 * 109.49846 * 60.06606 * 16 13 12 18 18 C 1.53041 * 109.49667 * 180.16467 * 16 13 12 19 19 C 1.53043 * 109.54143 * 181.31729 * 18 16 13 20 20 C 1.53198 * 109.30837 * 298.63623 * 19 18 16 21 21 N 1.46924 * 108.77628 * 54.63198 * 20 19 18 22 22 C 1.36937 * 120.62922 * 126.36923 * 21 20 19 23 23 H 1.08000 * 120.00318 * 208.02021 * 22 21 20 24 24 C 1.38813 * 120.00181 * 28.02407 * 22 21 20 25 25 N 1.31620 * 119.99460 * 17.51772 * 24 22 21 26 26 Si 1.86796 * 120.00214 * 197.52584 * 24 22 21 27 27 H 1.48497 * 109.47407 * 94.05969 * 26 24 22 28 28 H 1.48501 * 109.47004 * 214.06300 * 26 24 22 29 29 H 1.48500 * 109.47032 * 334.06171 * 26 24 22 30 30 C 1.46928 * 118.74018 * 306.39243 * 21 20 19 31 31 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47068 * 299.99696 * 1 2 3 33 33 H 1.09002 * 109.47135 * 59.99804 * 1 2 3 34 34 H 1.08001 * 120.45042 * 0.04585 * 4 3 2 35 35 H 1.08004 * 119.58949 * 179.97438 * 5 4 3 36 36 H 1.08003 * 119.59591 * 180.28908 * 7 6 5 37 37 H 1.08996 * 109.47047 * 24.71644 * 9 8 7 38 38 H 1.09001 * 109.47559 * 144.72532 * 9 8 7 39 39 H 0.96999 * 119.99816 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.46879 * 300.00463 * 15 13 12 41 41 H 1.09003 * 109.46806 * 60.00201 * 15 13 12 42 42 H 1.08995 * 109.47571 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.45771 * 301.33662 * 18 16 13 44 44 H 1.08999 * 109.46511 * 61.29076 * 18 16 13 45 45 H 1.08988 * 109.50104 * 178.68372 * 19 18 16 46 46 H 1.09001 * 109.52007 * 58.59429 * 19 18 16 47 47 H 1.09000 * 109.58360 * 294.84354 * 20 19 18 48 48 H 1.08996 * 109.69877 * 174.48584 * 20 19 18 49 49 H 0.97003 * 119.99387 * 180.02562 * 25 24 22 50 50 H 1.09004 * 109.58345 * 293.81846 * 30 21 20 51 51 H 1.09000 * 109.58620 * 173.39856 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0005 7 6 4.0231 2.5510 0.0058 8 6 3.4346 1.3028 0.0011 9 6 4.2838 0.0579 0.0028 10 6 4.4652 -0.4283 -1.4120 11 8 3.9555 0.1767 -2.3313 12 7 5.1947 -1.5350 -1.6560 13 6 5.3706 -2.0081 -3.0313 14 1 4.4615 -1.8151 -3.6010 15 6 6.5442 -1.2699 -3.6784 16 6 5.6567 -3.5110 -3.0211 17 1 4.8203 -4.0375 -2.5613 18 6 5.8446 -4.0050 -4.4573 19 6 6.0983 -5.5143 -4.4505 20 6 7.3809 -5.8088 -3.6662 21 7 7.2657 -5.2101 -2.3294 22 6 7.4632 -5.9681 -1.2062 23 1 6.9675 -5.7053 -0.2833 24 6 8.3004 -7.0743 -1.2536 25 7 9.1614 -7.2060 -2.2404 26 14 8.2051 -8.3759 0.0828 27 1 7.2940 -9.4652 -0.3512 28 1 9.5597 -8.9322 0.3295 29 1 7.6858 -7.7648 1.3327 30 6 6.9342 -3.7829 -2.2207 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 0.2245 2.3567 -0.0002 35 1 1.4008 4.5174 -0.0019 36 1 5.1000 2.6327 0.0107 37 1 5.2578 0.2831 0.4372 38 1 3.7929 -0.7161 0.5927 39 1 5.6027 -2.0188 -0.9208 40 1 6.3403 -0.1991 -3.6856 41 1 7.4533 -1.4628 -3.1087 42 1 6.6749 -1.6214 -4.7018 43 1 4.9458 -3.7905 -5.0356 44 1 6.6963 -3.4956 -4.9082 45 1 6.2088 -5.8692 -5.4751 46 1 5.2580 -6.0227 -3.9778 47 1 8.2352 -5.3771 -4.1876 48 1 7.5156 -6.8864 -3.5736 49 1 9.7462 -7.9792 -2.2737 50 1 7.7522 -3.1860 -2.6241 51 1 6.7718 -3.5242 -1.1743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317203092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:44 Heat of formation + Delta-G solvation = -26.166061 kcal Electronic energy + Delta-G solvation = -31069.611267 eV Core-core repulsion = 26969.629842 eV Total energy + Delta-G solvation = -4099.981426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.04865 -39.70689 -38.44416 -37.97654 -35.17582 -33.54187 -32.98894 -31.45847 -31.04053 -30.46853 -28.46827 -27.99679 -27.56609 -25.30539 -24.03520 -23.16076 -22.74602 -22.14159 -20.65359 -20.04807 -18.68902 -18.51507 -17.41653 -17.20187 -16.60990 -16.07242 -15.99955 -15.38020 -15.18274 -14.89284 -14.82267 -14.52220 -14.39291 -14.06922 -13.79433 -13.62708 -13.51007 -13.26879 -13.09296 -12.77962 -12.51108 -12.37327 -12.26671 -11.99414 -11.87893 -11.77614 -11.58545 -11.45180 -11.00209 -10.94143 -10.56656 -10.47183 -10.17896 -10.13500 -9.90117 -9.84627 -9.73836 -9.59294 -9.39970 -9.34800 -8.92824 -8.84742 -8.48027 -6.68428 -5.81248 -3.23809 0.84567 1.13678 2.76865 2.83366 3.27345 3.35288 3.42585 3.43608 3.68144 4.18031 4.37094 4.46166 4.52144 4.62532 4.77178 4.80900 4.89943 5.00374 5.08549 5.13316 5.16698 5.24516 5.36517 5.38758 5.45155 5.49562 5.58830 5.69034 5.69716 5.73779 5.81739 5.87855 6.03404 6.15564 6.23638 6.26180 6.30845 6.36271 6.51035 6.58404 6.67844 6.71772 6.79909 6.86834 6.89705 6.98536 7.38660 7.65563 7.67899 7.76748 7.79442 8.37153 8.42396 9.18610 9.82348 10.39243 11.26909 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.002379 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.290275 B =11764.988871 C =12355.411413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.183 3.817 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.508 5.508 7 C 0.144 3.856 8 C -0.145 4.145 9 C -0.093 4.093 10 C 0.518 3.482 11 O -0.542 6.542 12 N -0.721 5.721 13 C 0.151 3.849 14 H 0.079 0.921 15 C -0.164 4.164 16 C -0.112 4.112 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.065 0.935 24 C 0.003 3.997 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.152 3.848 31 H 0.104 0.896 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.160 0.840 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.402 0.598 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.045 0.955 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.053 0.947 47 H 0.017 0.983 48 H 0.085 0.915 49 H 0.254 0.746 50 H 0.025 0.975 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.888 16.454 3.590 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.215 6.215 3 C 0.129 3.871 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.220 5.220 7 C -0.012 4.012 8 C -0.148 4.148 9 C -0.134 4.134 10 C 0.304 3.696 11 O -0.419 6.419 12 N -0.373 5.373 13 C 0.046 3.954 14 H 0.097 0.903 15 C -0.222 4.222 16 C -0.133 4.133 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.026 3.974 31 H 0.122 0.878 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.178 0.822 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.238 0.762 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.103 0.897 49 H 0.064 0.936 50 H 0.042 0.958 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.641 17.318 2.914 22.864 hybrid contribution -0.573 -1.745 0.941 2.064 sum -15.214 15.572 3.855 22.109 Atomic orbital electron populations 1.23143 0.77759 1.04493 1.01489 1.86087 1.21863 1.26185 1.87396 1.19117 0.91856 0.84704 0.91412 1.22166 1.01420 0.93192 1.11595 1.22517 0.90353 0.96878 0.92739 1.67724 1.07081 1.31909 1.15255 1.22522 1.00228 0.86118 0.92295 1.19737 0.90825 0.96454 1.07812 1.20435 1.01111 0.96030 0.95780 1.20391 0.77999 0.80498 0.90731 1.90684 1.48572 1.56440 1.46201 1.46200 1.53044 1.27994 1.10047 1.20984 0.98662 0.93874 0.81850 0.90291 1.22253 0.98749 0.99997 1.01233 1.21942 1.01096 0.92120 0.98151 0.91071 1.21433 1.00280 0.97201 0.94975 1.22177 1.01700 0.94746 0.99535 1.20785 0.90970 1.00091 0.83764 1.44020 1.81568 1.03186 1.02544 1.19171 1.21258 1.07439 0.90440 0.91759 1.25036 0.95718 1.00852 0.97995 1.70048 1.21679 1.29378 1.33385 0.86293 0.76909 0.82155 0.81509 1.21513 1.21797 1.20402 1.20961 0.92681 0.87266 0.96512 0.87785 0.92409 0.92328 0.84464 0.82656 0.82233 0.87553 0.87496 0.76196 0.92951 0.91679 0.91499 0.93617 0.92173 0.93258 0.92842 0.96458 0.89657 0.93646 0.95762 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.17 16 2 O -0.30 -3.35 9.77 -18.92 -0.18 -3.54 16 3 C 0.18 2.08 6.70 -38.81 -0.26 1.82 16 4 C -0.26 -2.49 9.11 -39.30 -0.36 -2.85 16 5 C 0.13 1.29 11.17 -17.60 -0.20 1.09 16 6 N -0.51 -5.99 10.36 -13.33 -0.14 -6.13 16 7 C 0.14 1.62 10.83 -17.59 -0.19 1.43 16 8 C -0.15 -1.67 4.40 -104.34 -0.46 -2.13 16 9 C -0.09 -0.96 5.61 -29.04 -0.16 -1.13 16 10 C 0.52 7.06 7.79 -10.98 -0.09 6.98 16 11 O -0.54 -9.37 15.70 5.56 0.09 -9.29 16 12 N -0.72 -9.50 5.00 -53.80 -0.27 -9.77 16 13 C 0.15 2.20 2.41 -67.93 -0.16 2.04 16 14 H 0.08 1.25 7.58 -51.93 -0.39 0.86 16 15 C -0.16 -2.31 8.79 37.16 0.33 -1.98 16 16 C -0.11 -1.84 2.33 -90.50 -0.21 -2.05 16 17 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.10 -1.65 4.77 -26.69 -0.13 -1.78 16 19 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 20 C 0.17 3.95 5.31 -3.71 -0.02 3.93 16 21 N -0.59 -14.18 2.99 -172.32 -0.52 -14.70 16 22 C -0.25 -6.71 9.58 -15.06 -0.14 -6.86 16 23 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 24 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 25 N -0.90 -25.69 11.22 55.49 0.62 -25.06 16 26 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 C 0.15 2.94 5.30 -3.71 -0.02 2.92 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 33 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 34 H 0.14 0.91 6.47 -52.49 -0.34 0.57 16 35 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 36 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.11 0.81 8.06 -51.93 -0.42 0.39 16 38 H 0.11 1.02 7.77 -51.93 -0.40 0.61 16 39 H 0.40 4.80 6.97 -40.82 -0.28 4.51 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.93 6.32 -51.93 -0.33 0.60 16 42 H 0.07 0.91 6.46 -51.93 -0.34 0.57 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.98 6.50 -51.93 -0.34 0.64 16 45 H 0.05 0.84 8.14 -51.94 -0.42 0.41 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.02 0.48 6.18 -51.93 -0.32 0.16 16 51 H 0.05 0.86 6.52 -51.93 -0.34 0.53 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -33.43 400.48 -8.69 -42.12 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.97 Total: 4.35 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.33 Total: -0.24 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.30 Total: -55.66 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.10 Total: -12.82 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.43 -8.69 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317203092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.952 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds