Wall clock time and date at job start Wed Apr 1 2020 04:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35736 * 116.99951 * 2 1 4 4 C 1.39291 * 120.84859 * 359.97438 * 3 2 1 5 5 C 1.37942 * 119.09378 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82460 * 359.97438 * 5 4 3 7 7 C 1.31945 * 121.86383 * 359.72809 * 6 5 4 8 8 C 1.37993 * 120.82301 * 0.53826 * 7 6 5 9 9 C 1.50697 * 120.45910 * 179.75306 * 8 7 6 10 10 C 1.50698 * 109.46865 * 264.71971 * 9 8 7 11 11 O 1.21278 * 120.00406 * 0.02562 * 10 9 8 12 12 N 1.34782 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.46501 * 120.00315 * 179.97438 * 12 10 9 14 14 H 1.09003 * 109.47152 * 325.00591 * 13 12 10 15 15 C 1.53003 * 109.47048 * 85.00178 * 13 12 10 16 16 C 1.52996 * 109.47302 * 205.00394 * 13 12 10 17 17 H 1.09000 * 109.49846 * 60.06606 * 16 13 12 18 18 C 1.53041 * 109.49667 * 180.16467 * 16 13 12 19 19 C 1.53043 * 109.54143 * 181.31729 * 18 16 13 20 20 C 1.53198 * 109.30837 * 298.63623 * 19 18 16 21 21 N 1.46924 * 108.77628 * 54.63198 * 20 19 18 22 22 C 1.36937 * 120.62922 * 126.36923 * 21 20 19 23 23 H 1.08000 * 120.00318 * 208.02021 * 22 21 20 24 24 C 1.38813 * 120.00181 * 28.02407 * 22 21 20 25 25 N 1.31620 * 119.99460 * 17.51772 * 24 22 21 26 26 Si 1.86796 * 120.00214 * 197.52584 * 24 22 21 27 27 H 1.48497 * 109.47407 * 94.05969 * 26 24 22 28 28 H 1.48501 * 109.47004 * 214.06300 * 26 24 22 29 29 H 1.48500 * 109.47032 * 334.06171 * 26 24 22 30 30 C 1.46928 * 118.74018 * 306.39243 * 21 20 19 31 31 H 1.08997 * 109.47251 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47068 * 299.99696 * 1 2 3 33 33 H 1.09002 * 109.47135 * 59.99804 * 1 2 3 34 34 H 1.08001 * 120.45042 * 0.04585 * 4 3 2 35 35 H 1.08004 * 119.58949 * 179.97438 * 5 4 3 36 36 H 1.08003 * 119.59591 * 180.28908 * 7 6 5 37 37 H 1.08996 * 109.47047 * 24.71644 * 9 8 7 38 38 H 1.09001 * 109.47559 * 144.72532 * 9 8 7 39 39 H 0.96999 * 119.99816 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.46879 * 300.00463 * 15 13 12 41 41 H 1.09003 * 109.46806 * 60.00201 * 15 13 12 42 42 H 1.08995 * 109.47571 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.45771 * 301.33662 * 18 16 13 44 44 H 1.08999 * 109.46511 * 61.29076 * 18 16 13 45 45 H 1.08988 * 109.50104 * 178.68372 * 19 18 16 46 46 H 1.09001 * 109.52007 * 58.59429 * 19 18 16 47 47 H 1.09000 * 109.58360 * 294.84354 * 20 19 18 48 48 H 1.08996 * 109.69877 * 174.48584 * 20 19 18 49 49 H 0.97003 * 119.99387 * 180.02562 * 25 24 22 50 50 H 1.09004 * 109.58345 * 293.81846 * 30 21 20 51 51 H 1.09000 * 109.58620 * 173.39856 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0005 7 6 4.0231 2.5510 0.0058 8 6 3.4346 1.3028 0.0011 9 6 4.2838 0.0579 0.0028 10 6 4.4652 -0.4283 -1.4120 11 8 3.9555 0.1767 -2.3313 12 7 5.1947 -1.5350 -1.6560 13 6 5.3706 -2.0081 -3.0313 14 1 4.4615 -1.8151 -3.6010 15 6 6.5442 -1.2699 -3.6784 16 6 5.6567 -3.5110 -3.0211 17 1 4.8203 -4.0375 -2.5613 18 6 5.8446 -4.0050 -4.4573 19 6 6.0983 -5.5143 -4.4505 20 6 7.3809 -5.8088 -3.6662 21 7 7.2657 -5.2101 -2.3294 22 6 7.4632 -5.9681 -1.2062 23 1 6.9675 -5.7053 -0.2833 24 6 8.3004 -7.0743 -1.2536 25 7 9.1614 -7.2060 -2.2404 26 14 8.2051 -8.3759 0.0828 27 1 7.2940 -9.4652 -0.3512 28 1 9.5597 -8.9322 0.3295 29 1 7.6858 -7.7648 1.3327 30 6 6.9342 -3.7829 -2.2207 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8900 34 1 0.2245 2.3567 -0.0002 35 1 1.4008 4.5174 -0.0019 36 1 5.1000 2.6327 0.0107 37 1 5.2578 0.2831 0.4372 38 1 3.7929 -0.7161 0.5927 39 1 5.6027 -2.0188 -0.9208 40 1 6.3403 -0.1991 -3.6856 41 1 7.4533 -1.4628 -3.1087 42 1 6.6749 -1.6214 -4.7018 43 1 4.9458 -3.7905 -5.0356 44 1 6.6963 -3.4956 -4.9082 45 1 6.2088 -5.8692 -5.4751 46 1 5.2580 -6.0227 -3.9778 47 1 8.2352 -5.3771 -4.1876 48 1 7.5156 -6.8864 -3.5736 49 1 9.7462 -7.9792 -2.2737 50 1 7.7522 -3.1860 -2.6241 51 1 6.7718 -3.5242 -1.1743 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317203092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:43 Heat of formation + Delta-G solvation = -47.574545 kcal Electronic energy + Delta-G solvation = -31070.539609 eV Core-core repulsion = 26969.629842 eV Total energy + Delta-G solvation = -4100.909767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.82990 -40.84187 -39.43109 -39.13110 -36.65225 -34.66007 -34.34857 -32.49107 -32.20985 -32.16291 -29.68494 -28.86264 -28.30613 -27.18945 -25.30144 -23.95607 -23.88462 -23.56318 -22.09314 -21.18665 -20.07002 -19.30694 -18.70722 -18.16496 -18.01678 -17.12392 -16.84435 -16.69443 -16.31508 -15.93125 -15.89155 -15.68056 -15.63002 -15.19173 -15.10265 -14.85921 -14.67489 -14.43649 -14.19160 -14.06995 -13.96061 -13.74527 -13.28654 -13.18004 -13.02538 -12.83412 -12.75800 -12.67612 -12.48275 -12.25099 -12.12487 -12.04437 -11.91601 -11.68590 -11.49030 -11.24375 -11.06143 -10.88795 -10.51397 -10.50138 -10.09819 -10.00360 -9.71579 -8.63510 -7.84505 -5.29290 0.09812 0.36274 1.47865 1.49932 1.58202 1.72438 2.18987 2.27317 2.52872 2.87527 3.30048 3.48604 3.60675 3.66988 3.84043 3.89079 3.94790 4.01274 4.05944 4.09845 4.22317 4.33017 4.33641 4.35438 4.43603 4.46189 4.49400 4.65613 4.67812 4.68378 4.71680 4.78404 4.86501 4.92015 4.96345 5.00383 5.06498 5.09223 5.15990 5.23366 5.30773 5.36191 5.50038 5.57287 5.59513 5.62406 5.70349 5.80629 6.21300 6.41706 6.62907 7.03974 7.17633 7.32131 7.89719 8.41514 9.21592 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.002379 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.290275 B =11764.988871 C =12355.411413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.166 3.834 4 C -0.262 4.262 5 C 0.124 3.876 6 N -0.533 5.533 7 C 0.133 3.867 8 C -0.164 4.164 9 C -0.086 4.086 10 C 0.519 3.481 11 O -0.580 6.580 12 N -0.717 5.717 13 C 0.161 3.839 14 H 0.072 0.928 15 C -0.158 4.158 16 C -0.096 4.096 17 H 0.063 0.937 18 C -0.098 4.098 19 C -0.131 4.131 20 C 0.174 3.826 21 N -0.609 5.609 22 C -0.258 4.258 23 H 0.070 0.930 24 C -0.052 4.052 25 N -0.935 5.935 26 Si 0.963 3.037 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.265 1.265 30 C 0.152 3.848 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.174 0.826 37 H 0.134 0.866 38 H 0.116 0.884 39 H 0.410 0.590 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.048 0.952 47 H -0.004 1.004 48 H 0.049 0.951 49 H 0.248 0.752 50 H 0.022 0.978 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.644 17.524 4.374 24.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.112 3.888 4 C -0.283 4.283 5 C -0.032 4.032 6 N -0.245 5.245 7 C -0.023 4.023 8 C -0.167 4.167 9 C -0.126 4.126 10 C 0.307 3.693 11 O -0.460 6.460 12 N -0.369 5.369 13 C 0.056 3.944 14 H 0.091 0.909 15 C -0.216 4.216 16 C -0.117 4.117 17 H 0.082 0.918 18 C -0.136 4.136 19 C -0.170 4.170 20 C 0.048 3.952 21 N -0.332 5.332 22 C -0.388 4.388 23 H 0.088 0.912 24 C -0.247 4.247 25 N -0.581 5.581 26 Si 0.792 3.208 27 H -0.217 1.217 28 H -0.225 1.225 29 H -0.189 1.189 30 C 0.027 3.973 31 H 0.134 0.866 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.182 0.818 35 H 0.201 0.799 36 H 0.191 0.809 37 H 0.152 0.848 38 H 0.134 0.866 39 H 0.246 0.754 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.014 0.986 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.040 0.960 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.419 18.405 3.721 24.943 hybrid contribution -0.083 -2.030 0.684 2.144 sum -16.502 16.374 4.405 23.661 Atomic orbital electron populations 1.23409 0.75941 1.05752 1.02608 1.86050 1.23880 1.26311 1.87413 1.19412 0.92267 0.85464 0.91660 1.22467 1.02783 0.92469 1.10550 1.23049 0.90039 0.98252 0.91827 1.67747 1.08198 1.32359 1.16194 1.22808 1.01077 0.86108 0.92282 1.19927 0.91396 0.96825 1.08584 1.20448 1.02633 0.95906 0.93597 1.20913 0.76900 0.79829 0.91682 1.90664 1.50079 1.57540 1.47680 1.46157 1.52984 1.28055 1.09699 1.20768 0.98493 0.92445 0.82736 0.90944 1.22187 0.98176 0.99706 1.01494 1.21717 0.98974 0.93352 0.97640 0.91814 1.21426 1.01666 0.95224 0.95294 1.22012 0.98706 0.96672 0.99640 1.20605 0.92610 0.97725 0.84228 1.44283 1.81688 1.05100 1.02122 1.19530 1.20327 1.07654 0.91296 0.91242 1.25765 0.95867 1.02893 1.00196 1.70199 1.22795 1.29746 1.35371 0.85311 0.76272 0.79589 0.79645 1.21672 1.22480 1.18943 1.21087 0.93824 0.84640 0.97765 0.86587 0.90534 0.91897 0.81830 0.79860 0.80866 0.84786 0.86573 0.75356 0.93236 0.92043 0.90877 0.91045 0.91756 0.91370 0.93341 0.98587 0.93231 0.94277 0.95993 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 113.37 1.12 1.31 16 2 O -0.33 -6.73 9.77 -90.60 -0.88 -7.61 16 3 C 0.17 3.58 6.70 22.77 0.15 3.73 16 4 C -0.26 -4.51 9.11 22.45 0.20 -4.30 16 5 C 0.12 2.23 11.17 84.60 0.95 3.17 16 6 N -0.53 -12.03 10.36 -196.09 -2.03 -14.06 16 7 C 0.13 2.86 10.83 84.62 0.92 3.78 16 8 C -0.16 -3.61 4.40 -19.68 -0.09 -3.69 16 9 C -0.09 -1.64 5.61 29.10 0.16 -1.48 16 10 C 0.52 13.48 7.79 87.66 0.68 14.16 16 11 O -0.58 -19.61 15.70 -3.02 -0.05 -19.66 16 12 N -0.72 -17.74 5.00 -442.53 -2.21 -19.96 16 13 C 0.16 4.42 2.41 44.99 0.11 4.53 16 14 H 0.07 2.16 7.58 -2.39 -0.02 2.14 16 15 C -0.16 -4.19 8.79 71.98 0.63 -3.56 16 16 C -0.10 -3.00 2.33 -10.72 -0.02 -3.02 16 17 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 18 C -0.10 -3.02 4.77 30.62 0.15 -2.88 16 19 C -0.13 -4.79 6.08 30.67 0.19 -4.60 16 20 C 0.17 8.24 5.31 86.36 0.46 8.70 16 21 N -0.61 -29.25 2.99 -699.09 -2.09 -31.35 16 22 C -0.26 -13.65 9.58 84.03 0.81 -12.84 16 23 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 24 C -0.05 -2.84 4.90 84.86 0.42 -2.42 16 25 N -0.93 -54.70 11.22 21.65 0.24 -54.46 16 26 Si 0.96 44.01 29.59 68.60 2.03 46.04 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 28 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 29 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 30 C 0.15 5.73 5.30 86.36 0.46 6.18 16 31 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.60 7.71 -2.38 -0.02 0.58 16 33 H 0.06 0.68 7.71 -2.39 -0.02 0.66 16 34 H 0.16 1.75 6.47 -2.91 -0.02 1.73 16 35 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.17 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.13 1.75 8.06 -2.39 -0.02 1.73 16 38 H 0.12 2.01 7.77 -2.39 -0.02 1.99 16 39 H 0.41 9.01 6.97 -92.71 -0.65 8.36 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.06 1.67 6.32 -2.39 -0.02 1.66 16 42 H 0.07 1.84 6.46 -2.39 -0.02 1.83 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.95 6.50 -2.39 -0.02 1.94 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.05 2.69 6.06 -2.39 -0.01 2.67 16 49 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 50 H 0.02 0.86 6.18 -2.38 -0.01 0.84 16 51 H 0.06 1.99 6.52 -2.39 -0.02 1.98 16 Total: -1.00 -73.17 400.48 2.58 -70.59 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.30 Total: 23.71 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 7.28 Total: 6.76 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.09 Total: -119.83 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.93 Total: -27.27 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -73.17 2.58 -70.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317203092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.012 kcal (2) G-P(sol) polarization free energy of solvation -73.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds