Wall clock time and date at job start Wed Apr 1 2020 04:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35741 * 117.00212 * 2 1 4 4 C 1.39286 * 120.84541 * 359.97438 * 3 2 1 5 5 C 1.37950 * 119.08915 * 180.02562 * 4 3 2 6 6 N 1.31975 * 120.82752 * 359.97438 * 5 4 3 7 7 C 1.31951 * 121.85979 * 359.73278 * 6 5 4 8 8 C 1.37992 * 120.82140 * 0.53317 * 7 6 5 9 9 C 1.50708 * 120.45129 * 179.75589 * 8 7 6 10 10 C 1.50701 * 109.46886 * 264.71738 * 9 8 7 11 11 O 1.21280 * 119.99948 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00249 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00062 * 180.02562 * 12 10 9 14 14 H 1.08991 * 109.47251 * 35.00493 * 13 12 10 15 15 C 1.53004 * 109.47165 * 275.00383 * 13 12 10 16 16 C 1.52999 * 109.46668 * 155.00394 * 13 12 10 17 17 H 1.09003 * 109.49863 * 59.94014 * 16 13 12 18 18 C 1.53038 * 109.49737 * 179.97438 * 16 13 12 19 19 C 1.53041 * 109.54167 * 181.31730 * 18 16 13 20 20 C 1.53189 * 109.31149 * 298.63663 * 19 18 16 21 21 N 1.46923 * 108.77694 * 54.63420 * 20 19 18 22 22 C 1.36934 * 120.63434 * 126.40924 * 21 20 19 23 23 H 1.08004 * 120.00515 * 207.67428 * 22 21 20 24 24 C 1.38820 * 119.99726 * 27.67987 * 22 21 20 25 25 N 1.31614 * 119.99809 * 17.35672 * 24 22 21 26 26 Si 1.86798 * 119.99644 * 197.35561 * 24 22 21 27 27 H 1.48499 * 109.47380 * 60.00194 * 26 24 22 28 28 H 1.48506 * 109.46848 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47085 * 299.99586 * 26 24 22 30 30 C 1.46938 * 118.73916 * 306.39235 * 21 20 19 31 31 H 1.08999 * 109.47789 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47077 * 299.99563 * 1 2 3 33 33 H 1.08998 * 109.47042 * 59.99385 * 1 2 3 34 34 H 1.07997 * 120.45175 * 0.04486 * 4 3 2 35 35 H 1.07999 * 119.58319 * 179.97438 * 5 4 3 36 36 H 1.08003 * 119.58826 * 180.28566 * 7 6 5 37 37 H 1.09000 * 109.46670 * 144.72521 * 9 8 7 38 38 H 1.08992 * 109.47381 * 24.72005 * 9 8 7 39 39 H 0.97001 * 119.99232 * 0.28411 * 12 10 9 40 40 H 1.08994 * 109.46932 * 180.02562 * 15 13 12 41 41 H 1.09004 * 109.46801 * 300.00249 * 15 13 12 42 42 H 1.08995 * 109.47091 * 60.00332 * 15 13 12 43 43 H 1.09000 * 109.46251 * 301.33863 * 18 16 13 44 44 H 1.09005 * 109.45906 * 61.30856 * 18 16 13 45 45 H 1.09001 * 109.49149 * 58.58847 * 19 18 16 46 46 H 1.08996 * 109.49990 * 178.65369 * 19 18 16 47 47 H 1.09004 * 109.58812 * 174.42133 * 20 19 18 48 48 H 1.09003 * 109.59011 * 294.70639 * 20 19 18 49 49 H 0.97007 * 119.99719 * 180.02562 * 25 24 22 50 50 H 1.09001 * 109.58132 * 293.82104 * 30 21 20 51 51 H 1.08997 * 109.58714 * 173.39524 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.3040 2.3887 -0.0005 5 6 1.9677 3.5980 -0.0011 6 7 3.2866 3.6457 -0.0005 7 6 4.0231 2.5509 0.0057 8 6 3.4345 1.3028 0.0010 9 6 4.2838 0.0578 0.0026 10 6 4.4651 -0.4285 -1.4122 11 8 3.9553 0.1766 -2.3314 12 7 5.1946 -1.5352 -1.6562 13 6 5.3713 -2.0075 -3.0317 14 1 5.4327 -1.1522 -3.7045 15 6 4.1805 -2.8831 -3.4272 16 6 6.6604 -2.8259 -3.1282 17 1 6.5999 -3.6808 -2.4546 18 6 6.8453 -3.3202 -4.5647 19 6 8.1174 -4.1663 -4.6551 20 6 9.3270 -3.3041 -4.2810 21 7 9.0919 -2.7075 -2.9591 22 6 10.0094 -2.8556 -1.9535 23 1 9.6888 -2.8338 -0.9224 24 6 11.3517 -3.0338 -2.2594 25 7 11.7999 -2.7262 -3.4580 26 14 12.5216 -3.7101 -0.9698 27 1 12.0675 -5.0598 -0.5485 28 1 13.8885 -3.8048 -1.5425 29 1 12.5390 -2.8041 0.2066 30 6 7.8535 -1.9484 -2.7367 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 0.2245 2.3566 -0.0002 35 1 1.4009 4.5173 -0.0019 36 1 5.1000 2.6326 0.0106 37 1 3.7928 -0.7161 0.5926 38 1 5.2578 0.2829 0.4371 39 1 5.5995 -2.0210 -0.9207 40 1 4.3122 -3.2349 -4.4504 41 1 4.1192 -3.7384 -2.7543 42 1 3.2622 -2.3001 -3.3584 43 1 5.9858 -3.9247 -4.8542 44 1 6.9300 -2.4648 -5.2350 45 1 8.0438 -5.0083 -3.9668 46 1 8.2356 -4.5378 -5.6730 47 1 10.2222 -3.9252 -4.2476 48 1 9.4569 -2.5155 -5.0222 49 1 12.7378 -2.8510 -3.6719 50 1 7.8618 -1.0478 -3.3507 51 1 7.7765 -1.6751 -1.6844 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317203093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:47 Heat of formation + Delta-G solvation = -28.044771 kcal Electronic energy + Delta-G solvation = -31085.600214 eV Core-core repulsion = 26985.537321 eV Total energy + Delta-G solvation = -4100.062893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.02838 -39.64942 -38.43170 -37.86167 -35.21388 -33.51551 -32.96723 -31.43398 -31.02848 -30.44989 -28.61967 -28.14687 -27.60215 -25.20282 -23.72716 -23.14032 -22.58716 -21.91497 -20.55906 -20.25041 -19.06302 -18.58430 -17.39400 -17.06217 -16.68685 -16.10211 -16.03209 -15.25678 -15.20212 -14.91897 -14.76360 -14.47537 -14.32069 -13.96735 -13.74567 -13.54372 -13.38442 -13.26712 -13.13273 -12.77687 -12.54783 -12.44703 -12.23127 -12.07942 -11.88708 -11.75755 -11.45553 -11.44020 -11.09771 -10.94747 -10.64617 -10.41371 -10.21245 -10.13586 -9.92096 -9.83136 -9.70020 -9.53954 -9.41053 -9.31424 -8.90826 -8.82886 -8.45233 -6.66200 -5.78148 -3.20515 0.87817 1.16117 2.79691 2.82812 3.28563 3.37642 3.43901 3.44378 3.70751 4.21224 4.39709 4.48193 4.54418 4.63886 4.75291 4.80408 4.90026 4.99899 5.07385 5.11656 5.16047 5.30108 5.39230 5.40820 5.44713 5.52297 5.58062 5.62115 5.71118 5.79496 5.83143 5.83832 6.06400 6.10043 6.15911 6.32620 6.34973 6.37255 6.46157 6.61834 6.63955 6.73721 6.83926 6.89206 6.89661 7.00799 7.41213 7.67369 7.69501 7.78767 7.83701 8.39661 8.45284 9.21657 9.85586 10.42639 11.30107 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014077 B = 0.002490 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.587367 B =11244.508830 C =12339.832761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.182 3.818 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.507 5.507 7 C 0.146 3.854 8 C -0.145 4.145 9 C -0.092 4.092 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.720 5.720 13 C 0.149 3.851 14 H 0.084 0.916 15 C -0.160 4.160 16 C -0.110 4.110 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 C 0.156 3.844 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.137 0.863 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.401 0.599 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.086 0.914 48 H 0.017 0.983 49 H 0.254 0.746 50 H 0.016 0.984 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.854 4.022 6.915 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.217 6.217 3 C 0.128 3.872 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.218 5.218 7 C -0.010 4.010 8 C -0.148 4.148 9 C -0.133 4.133 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.371 5.371 13 C 0.044 3.956 14 H 0.102 0.898 15 C -0.218 4.218 16 C -0.131 4.131 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.043 3.957 21 N -0.314 5.314 22 C -0.383 4.383 23 H 0.082 0.918 24 C -0.196 4.196 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.209 1.209 30 C 0.029 3.971 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.155 0.845 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.235 0.765 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.104 0.896 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.034 0.966 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.544 5.039 6.181 23.913 hybrid contribution 0.101 -1.334 0.901 1.613 sum -22.443 3.705 7.082 23.823 Atomic orbital electron populations 1.23123 0.77881 1.04336 1.01526 1.86066 1.21760 1.26292 1.87543 1.19093 0.91820 0.84629 0.91638 1.22154 1.01351 0.93212 1.11722 1.22530 0.90383 0.96875 0.92692 1.67742 1.07047 1.31936 1.15106 1.22581 1.00368 0.86092 0.91960 1.19737 0.90769 0.96492 1.07822 1.20432 1.01196 0.95935 0.95736 1.20366 0.78150 0.80245 0.90751 1.90691 1.48187 1.56634 1.46150 1.46076 1.53145 1.28034 1.09797 1.21016 0.94655 0.97265 0.82666 0.89763 1.22187 0.98247 0.99643 1.01743 1.21961 0.94013 0.98889 0.98235 0.91093 1.21445 0.97769 0.99346 0.95367 1.22173 0.97208 0.99139 0.99570 1.20788 0.94808 0.94421 0.85683 1.44037 1.18246 1.58584 1.10483 1.19115 0.86878 1.44779 0.87520 0.91804 1.25033 0.96792 1.01000 0.96813 1.70033 1.14231 1.49739 1.20599 0.86385 0.80129 0.79268 0.81061 1.21086 1.21663 1.20894 1.20853 0.85906 0.92070 0.98222 0.87913 0.92437 0.92341 0.84516 0.82665 0.82066 0.87675 0.87412 0.76506 0.91458 0.92769 0.92800 0.93190 0.92645 0.92812 0.93287 0.89599 0.96538 0.93588 0.96601 0.93062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.16 16 2 O -0.31 -3.21 9.77 -18.93 -0.18 -3.40 16 3 C 0.18 2.07 6.70 -38.82 -0.26 1.81 16 4 C -0.26 -2.53 9.11 -39.30 -0.36 -2.89 16 5 C 0.13 1.34 11.17 -17.60 -0.20 1.14 16 6 N -0.51 -6.32 10.36 -13.33 -0.14 -6.46 16 7 C 0.15 1.75 10.83 -17.59 -0.19 1.56 16 8 C -0.14 -1.72 4.40 -104.34 -0.46 -2.18 16 9 C -0.09 -0.97 5.61 -29.03 -0.16 -1.13 16 10 C 0.52 7.16 7.79 -10.98 -0.09 7.07 16 11 O -0.54 -9.53 15.70 5.56 0.09 -9.45 16 12 N -0.72 -9.30 4.47 -53.81 -0.24 -9.54 16 13 C 0.15 2.15 2.16 -67.93 -0.15 2.00 16 14 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.16 -2.05 9.13 37.16 0.34 -1.71 16 16 C -0.11 -1.79 1.97 -90.50 -0.18 -1.97 16 17 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.10 -1.66 4.85 -26.69 -0.13 -1.79 16 19 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 20 C 0.17 4.00 5.31 -3.71 -0.02 3.98 16 21 N -0.59 -14.51 3.00 -172.31 -0.52 -15.03 16 22 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 23 H 0.06 1.66 7.89 -52.48 -0.41 1.25 16 24 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 25 N -0.90 -26.10 11.19 55.49 0.62 -25.48 16 26 Si 0.90 21.41 29.59 -169.99 -5.03 16.39 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C 0.16 3.17 5.56 -3.71 -0.02 3.15 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.27 7.71 -51.93 -0.40 -0.13 16 33 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 34 H 0.14 0.91 6.47 -52.49 -0.34 0.57 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.16 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.11 0.95 7.77 -51.93 -0.40 0.54 16 38 H 0.11 0.90 8.06 -51.93 -0.42 0.48 16 39 H 0.40 4.43 8.44 -40.82 -0.34 4.08 16 40 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.71 6.36 -51.93 -0.33 0.38 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 48 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.05 1.00 7.46 -51.93 -0.39 0.61 16 LS Contribution 405.98 15.07 6.12 6.12 Total: -1.00 -34.07 405.98 -8.81 -42.89 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.26 Total: 3.56 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.27 Total: 0.40 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: -0.27 Total: -56.51 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.10 Total: -12.85 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.07 -8.81 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317203093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.843 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds