Wall clock time and date at job start Wed Apr 1 2020 04:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35739 * 117.00058 * 2 1 4 4 C 1.39290 * 120.84306 * 0.02562 * 3 2 1 5 5 C 1.37953 * 119.08985 * 179.97438 * 4 3 2 6 6 N 1.31979 * 120.82471 * 359.97438 * 5 4 3 7 7 C 1.31943 * 121.86226 * 359.74916 * 6 5 4 8 8 C 1.37999 * 120.82147 * 0.53963 * 7 6 5 9 9 C 1.50703 * 120.45253 * 179.72339 * 8 7 6 10 10 C 1.50698 * 109.47300 * 264.72280 * 9 8 7 11 11 O 1.21280 * 119.99674 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00146 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46425 * 324.99518 * 13 12 10 15 15 C 1.52999 * 109.47282 * 84.99646 * 13 12 10 16 16 C 1.52997 * 109.47045 * 204.99914 * 13 12 10 17 17 H 1.08995 * 109.49723 * 300.06067 * 16 13 12 18 18 C 1.53039 * 109.49646 * 179.97438 * 16 13 12 19 19 C 1.53043 * 109.53855 * 178.68422 * 18 16 13 20 20 C 1.53194 * 109.31469 * 61.36745 * 19 18 16 21 21 N 1.46926 * 108.77094 * 305.36675 * 20 19 18 22 22 C 1.36938 * 120.62913 * 233.58410 * 21 20 19 23 23 H 1.08002 * 120.00130 * 151.83752 * 22 21 20 24 24 C 1.38812 * 119.99871 * 331.83433 * 22 21 20 25 25 N 1.31618 * 120.00152 * 343.08212 * 24 22 21 26 26 Si 1.86799 * 119.99757 * 163.07868 * 24 22 21 27 27 H 1.48504 * 109.47331 * 90.00242 * 26 24 22 28 28 H 1.48503 * 109.47084 * 209.99898 * 26 24 22 29 29 H 1.48496 * 109.47394 * 330.00126 * 26 24 22 30 30 C 1.46928 * 118.74049 * 53.60929 * 21 20 19 31 31 H 1.08999 * 109.46898 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47446 * 300.00382 * 1 2 3 33 33 H 1.09001 * 109.46914 * 60.00361 * 1 2 3 34 34 H 1.07997 * 120.45628 * 0.02562 * 4 3 2 35 35 H 1.07995 * 119.58834 * 180.02562 * 5 4 3 36 36 H 1.08004 * 119.59521 * 180.26766 * 7 6 5 37 37 H 1.08999 * 109.47156 * 144.72585 * 9 8 7 38 38 H 1.08995 * 109.47225 * 24.72632 * 9 8 7 39 39 H 0.96994 * 120.00020 * 359.97438 * 12 10 9 40 40 H 1.08999 * 109.46973 * 60.00567 * 15 13 12 41 41 H 1.09001 * 109.46648 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47338 * 300.00052 * 15 13 12 43 43 H 1.09004 * 109.46317 * 298.70706 * 18 16 13 44 44 H 1.09000 * 109.46299 * 58.67821 * 18 16 13 45 45 H 1.08998 * 109.49623 * 181.31751 * 19 18 16 46 46 H 1.08997 * 109.49715 * 301.38431 * 19 18 16 47 47 H 1.09003 * 109.58757 * 65.15103 * 20 19 18 48 48 H 1.09000 * 109.58811 * 185.58323 * 20 19 18 49 49 H 0.97000 * 119.99591 * 180.02562 * 25 24 22 50 50 H 1.09003 * 109.58413 * 186.60084 * 30 21 20 51 51 H 1.08994 * 109.58568 * 66.18100 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0016 7 6 4.0230 2.5511 0.0065 8 6 3.4345 1.3029 0.0002 9 6 4.2838 0.0580 -0.0004 10 6 4.4646 -0.4262 -1.4160 11 8 3.9544 0.1803 -2.3340 12 7 5.1932 -1.5330 -1.6617 13 6 5.3695 -2.0034 -3.0380 14 1 4.4608 -1.8085 -3.6076 15 6 6.5440 -1.2649 -3.6829 16 6 5.6543 -3.5066 -3.0306 17 1 6.5622 -3.7020 -2.4601 18 6 5.8379 -3.9987 -4.4680 19 6 6.1552 -5.4958 -4.4599 20 6 4.9837 -6.2587 -3.8336 21 7 4.7068 -5.6933 -2.5061 22 6 4.6634 -6.4991 -1.3998 23 1 4.9135 -6.0974 -0.4289 24 6 4.2978 -7.8323 -1.5261 25 7 3.6810 -8.2454 -2.6129 26 14 4.6814 -9.0400 -0.1536 27 1 3.5472 -9.0775 0.8042 28 1 4.8886 -10.3934 -0.7287 29 1 5.9134 -8.6093 0.5548 30 6 4.4770 -4.2469 -2.3882 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 0.2244 2.3566 0.0014 35 1 1.4007 4.5173 0.0019 36 1 5.0999 2.6328 0.0111 37 1 3.7932 -0.7169 0.5887 38 1 5.2579 0.2825 0.4341 39 1 5.6015 -2.0178 -0.9275 40 1 7.4526 -1.4598 -3.1132 41 1 6.6747 -1.6146 -4.7070 42 1 6.3411 -0.1939 -3.6882 43 1 4.9210 -3.8249 -5.0313 44 1 6.6595 -3.4561 -4.9355 45 1 6.3089 -5.8407 -5.4824 46 1 7.0587 -5.6730 -3.8765 47 1 4.1014 -6.1564 -4.4656 48 1 5.2448 -7.3124 -3.7348 49 1 3.4252 -9.1769 -2.7010 50 1 4.4037 -3.9732 -1.3356 51 1 3.5534 -3.9806 -2.9022 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317203094.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:51 Heat of formation + Delta-G solvation = -28.435886 kcal Electronic energy + Delta-G solvation = -31241.746834 eV Core-core repulsion = 27141.666981 eV Total energy + Delta-G solvation = -4100.079853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.99520 -39.64187 -38.36989 -37.86284 -35.21526 -33.50463 -32.97095 -31.40742 -31.03164 -30.45201 -28.61156 -28.08596 -27.55194 -25.20984 -23.72467 -23.10413 -22.57500 -21.91907 -20.55754 -20.24769 -19.06481 -18.53039 -17.36119 -17.04608 -16.68455 -16.06027 -15.94883 -15.35716 -15.15767 -14.87605 -14.70419 -14.42406 -14.33158 -13.92309 -13.75263 -13.54690 -13.38527 -13.26780 -13.13683 -12.79972 -12.47239 -12.44759 -12.20748 -12.05587 -11.79479 -11.75126 -11.48414 -11.37281 -11.09841 -10.96705 -10.64332 -10.42232 -10.21513 -10.14213 -9.92503 -9.83407 -9.71171 -9.53972 -9.41411 -9.29653 -8.87140 -8.82733 -8.46755 -6.66056 -5.79330 -3.21990 0.88356 1.18693 2.80138 2.92395 3.29004 3.35401 3.42723 3.44467 3.71265 4.21709 4.41854 4.47080 4.56801 4.67666 4.86311 4.90272 4.91944 5.02109 5.11811 5.13963 5.27974 5.30234 5.38600 5.38897 5.44707 5.52216 5.57854 5.62353 5.74175 5.79419 5.82937 5.87063 6.06432 6.10162 6.15760 6.32816 6.35388 6.36892 6.46008 6.61824 6.63718 6.73441 6.83941 6.88890 6.97747 7.00685 7.40556 7.66861 7.69188 7.77978 7.82597 8.39878 8.44590 9.20808 9.84634 10.41916 11.28979 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012391 B = 0.002731 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.189453 B =10249.655498 C =11601.575514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.303 6.303 3 C 0.185 3.815 4 C -0.263 4.263 5 C 0.132 3.868 6 N -0.509 5.509 7 C 0.143 3.857 8 C -0.146 4.146 9 C -0.092 4.092 10 C 0.519 3.481 11 O -0.540 6.540 12 N -0.720 5.720 13 C 0.149 3.851 14 H 0.084 0.916 15 C -0.160 4.160 16 C -0.110 4.110 17 H 0.071 0.929 18 C -0.101 4.101 19 C -0.142 4.142 20 C 0.169 3.831 21 N -0.591 5.591 22 C -0.252 4.252 23 H 0.064 0.936 24 C 0.002 3.998 25 N -0.902 5.902 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.279 1.279 30 C 0.157 3.843 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.401 0.599 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.016 0.984 48 H 0.085 0.915 49 H 0.253 0.747 50 H 0.051 0.949 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 19.175 4.569 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.213 6.213 3 C 0.131 3.869 4 C -0.284 4.284 5 C -0.025 4.025 6 N -0.221 5.221 7 C -0.013 4.013 8 C -0.150 4.150 9 C -0.133 4.133 10 C 0.305 3.695 11 O -0.417 6.417 12 N -0.371 5.371 13 C 0.044 3.956 14 H 0.102 0.898 15 C -0.219 4.219 16 C -0.131 4.131 17 H 0.089 0.911 18 C -0.139 4.139 19 C -0.181 4.181 20 C 0.044 3.956 21 N -0.314 5.314 22 C -0.382 4.382 23 H 0.082 0.918 24 C -0.197 4.197 25 N -0.546 5.546 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.216 1.216 29 H -0.205 1.205 30 C 0.030 3.970 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.156 0.844 35 H 0.173 0.827 36 H 0.176 0.824 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.235 0.765 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.104 0.896 49 H 0.063 0.937 50 H 0.069 0.931 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.526 19.992 3.867 20.369 hybrid contribution -0.452 -1.710 0.953 2.010 sum -0.978 18.282 4.820 18.932 Atomic orbital electron populations 1.23161 0.77610 1.04733 1.01392 1.86110 1.21987 1.26003 1.87201 1.19140 0.91888 0.84812 0.91107 1.22181 1.01487 0.93184 1.11513 1.22506 0.90330 0.96874 0.92779 1.67713 1.07101 1.31891 1.15420 1.22481 1.00114 0.86154 0.92536 1.19725 0.90874 0.96402 1.07950 1.20427 1.00944 0.96140 0.95778 1.20368 0.77943 0.80473 0.90732 1.90690 1.48234 1.56424 1.46313 1.46075 1.53279 1.27907 1.09793 1.21016 0.98900 0.93718 0.81980 0.89832 1.22194 0.98170 1.00413 1.01096 1.21959 1.01419 0.91543 0.98177 0.91072 1.21444 1.00442 0.96886 0.95147 1.22175 1.01324 0.95069 0.99529 1.20787 0.92155 0.97933 0.84769 1.44043 1.81579 1.01193 1.04560 1.19139 1.39476 0.91622 0.87923 0.91833 1.25042 0.98360 0.98832 0.97415 1.70039 1.40908 1.15611 1.28080 0.86329 0.78233 0.80813 0.81575 1.21439 1.21583 1.20501 1.20847 0.93032 0.85474 0.97641 0.87570 0.92446 0.92312 0.84421 0.82680 0.82374 0.87367 0.87764 0.76508 0.92709 0.91433 0.92739 0.92675 0.93155 0.93289 0.92791 0.96559 0.89637 0.93660 0.93082 0.96680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.84 101.05 0.99 1.21 16 2 O -0.30 -3.72 9.77 -18.93 -0.18 -3.90 16 3 C 0.18 2.24 6.70 -38.82 -0.26 1.98 16 4 C -0.26 -2.66 9.11 -39.29 -0.36 -3.02 16 5 C 0.13 1.34 11.17 -17.59 -0.20 1.14 16 6 N -0.51 -6.11 10.36 -13.33 -0.14 -6.25 16 7 C 0.14 1.62 10.83 -17.59 -0.19 1.43 16 8 C -0.15 -1.74 4.40 -104.34 -0.46 -2.20 16 9 C -0.09 -0.97 5.61 -29.03 -0.16 -1.14 16 10 C 0.52 7.17 7.79 -10.99 -0.09 7.09 16 11 O -0.54 -9.55 15.70 5.56 0.09 -9.46 16 12 N -0.72 -9.32 4.48 -53.81 -0.24 -9.56 16 13 C 0.15 2.15 2.16 -67.93 -0.15 2.00 16 14 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 15 C -0.16 -2.04 9.13 37.16 0.34 -1.70 16 16 C -0.11 -1.80 1.97 -90.50 -0.18 -1.98 16 17 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.10 -1.66 4.85 -26.69 -0.13 -1.79 16 19 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 20 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 21 N -0.59 -14.53 2.99 -172.31 -0.52 -15.05 16 22 C -0.25 -6.77 9.58 -15.06 -0.14 -6.92 16 23 H 0.06 1.66 7.89 -52.49 -0.41 1.25 16 24 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 25 N -0.90 -26.04 11.20 55.49 0.62 -25.42 16 26 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 C 0.16 3.20 5.56 -3.71 -0.02 3.18 16 31 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.36 7.71 -51.93 -0.40 -0.04 16 33 H 0.06 0.45 7.71 -51.93 -0.40 0.05 16 34 H 0.14 1.02 6.47 -52.49 -0.34 0.69 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 37 H 0.11 1.09 7.77 -51.93 -0.40 0.69 16 38 H 0.10 0.76 8.06 -51.93 -0.42 0.34 16 39 H 0.40 4.44 8.43 -40.82 -0.34 4.09 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.82 6.40 -51.93 -0.33 0.49 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.71 6.36 -51.93 -0.33 0.38 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 49 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 50 H 0.05 1.01 7.45 -51.93 -0.39 0.62 16 51 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 405.99 15.07 6.12 6.12 Total: -1.00 -34.03 405.99 -8.81 -42.84 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -8.26 Total: 3.93 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.27 Total: 0.43 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: -0.27 Total: -56.27 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -0.10 Total: -13.36 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.03 -8.81 -42.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317203094.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.403 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds