Wall clock time and date at job start Wed Apr 1 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00123 * 359.97438 * 7 5 4 9 9 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.52997 * 109.47306 * 89.99619 * 9 7 5 11 11 N 1.46900 * 109.47465 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00078 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46587 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00426 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99851 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00046 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00316 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99655 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99773 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00135 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46814 * 90.00655 * 20 18 16 22 22 H 1.48497 * 109.47359 * 209.99779 * 20 18 16 23 23 H 1.48491 * 109.47412 * 330.00601 * 20 18 16 24 24 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 25 25 C 1.38245 * 119.99431 * 59.73158 * 24 2 1 26 26 C 1.38237 * 119.99269 * 179.78957 * 25 24 2 27 27 C 1.38234 * 120.00384 * 0.43420 * 26 25 24 28 28 C 1.38233 * 119.99643 * 359.81821 * 27 26 25 29 29 C 1.38228 * 120.00126 * 240.00037 * 24 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 34 34 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 35 35 H 1.09009 * 109.46915 * 90.00673 * 8 7 5 36 36 H 1.09000 * 109.47236 * 210.00124 * 8 7 5 37 37 H 1.09001 * 109.47562 * 330.01021 * 8 7 5 38 38 H 1.08998 * 109.46720 * 209.99621 * 9 7 5 39 39 H 1.09001 * 109.46877 * 329.99610 * 9 7 5 40 40 H 1.09006 * 109.46964 * 299.99911 * 10 9 7 41 41 H 1.08995 * 109.47519 * 59.99582 * 10 9 7 42 42 H 1.00891 * 110.99679 * 56.04084 * 11 10 9 43 43 H 1.08991 * 109.47311 * 299.99677 * 12 11 10 44 44 H 1.09003 * 109.47272 * 60.00058 * 12 11 10 45 45 H 0.97003 * 120.00079 * 0.02562 * 15 13 12 46 46 H 0.97003 * 120.00217 * 179.97438 * 19 18 16 47 47 H 1.07995 * 119.99936 * 359.97438 * 25 24 2 48 48 H 1.08000 * 119.99610 * 180.27818 * 26 25 24 49 49 H 1.07998 * 120.00233 * 179.83582 * 27 26 25 50 50 H 1.08009 * 119.99828 * 179.97438 * 28 27 26 51 51 H 1.07992 * 120.00101 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 2.7455 -1.6360 -3.8371 9 6 1.5965 0.3647 -4.8933 10 6 2.6939 1.3740 -5.2367 11 7 2.3046 2.1329 -6.4327 12 6 3.3367 3.1144 -6.7925 13 6 2.9033 3.8713 -8.0214 14 8 1.8395 3.6178 -8.5461 15 7 3.6977 4.8300 -8.5375 16 6 3.3037 5.5183 -9.6557 17 1 2.3569 5.2920 -10.1234 18 6 4.1230 6.5063 -10.1880 19 7 3.7451 7.1664 -11.2596 20 14 5.7609 6.8972 -9.3795 21 1 6.8221 6.0452 -9.9739 22 1 6.0932 8.3276 -9.6004 23 1 5.6698 6.6295 -7.9218 24 6 2.0324 -0.7104 1.2304 25 6 1.6938 -2.0323 1.4519 26 6 2.1582 -2.6852 2.5784 27 6 2.9537 -2.0137 3.4879 28 6 3.2879 -0.6904 3.2690 29 6 2.8271 -0.0386 2.1403 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7993 -1.2057 34 1 1.6055 -1.7197 -1.2953 35 1 2.0560 -2.4760 -3.9225 36 1 3.3680 -1.5847 -4.7304 37 1 3.3785 -1.7732 -2.9604 38 1 1.4590 -0.3210 -5.7294 39 1 0.6634 0.8942 -4.7003 40 1 2.8314 2.0597 -4.4005 41 1 3.6270 0.8447 -5.4295 42 1 1.4102 2.5809 -6.3013 43 1 3.4785 3.8117 -5.9670 44 1 4.2744 2.5973 -6.9966 45 1 4.5486 5.0325 -8.1181 46 1 4.3169 7.8564 -11.6311 47 1 1.0690 -2.5557 0.7434 48 1 1.8974 -3.7192 2.7492 49 1 3.3143 -2.5231 4.3693 50 1 3.9091 -0.1656 3.9798 51 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317660790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:39 Heat of formation + Delta-G solvation = -44.968172 kcal Electronic energy + Delta-G solvation = -29111.635666 eV Core-core repulsion = 25010.838920 eV Total energy + Delta-G solvation = -4100.796746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.59252 -39.56190 -38.46480 -36.67288 -35.29684 -35.05881 -33.86160 -31.66120 -31.31567 -30.74754 -29.75029 -28.11838 -27.14384 -25.82515 -24.15257 -23.53701 -22.91698 -22.18238 -20.63444 -19.44029 -19.16408 -18.31846 -17.73777 -16.90858 -16.47665 -16.42071 -15.85556 -15.67231 -15.49487 -15.22141 -14.87707 -14.37727 -14.16163 -14.11629 -13.83092 -13.81226 -13.62557 -13.38663 -13.29771 -13.05343 -13.04050 -12.74773 -12.70739 -12.42030 -12.29942 -12.09577 -11.89610 -11.71354 -11.64947 -11.49749 -11.24196 -11.16537 -11.06605 -10.99615 -10.58515 -9.96891 -9.94315 -9.55966 -9.31484 -9.09759 -8.98376 -8.56777 -8.19130 -8.14301 -6.29748 -3.81064 0.95394 1.00576 2.36718 2.66517 3.03830 3.07831 3.15930 3.39057 3.75640 4.05568 4.11302 4.23906 4.32075 4.52781 4.59147 4.63857 4.67744 4.74491 4.77473 4.87846 4.94061 5.01597 5.07144 5.11075 5.11811 5.19076 5.24116 5.25824 5.32464 5.38785 5.45657 5.58452 5.62373 5.62867 5.71230 5.75391 5.82109 5.82630 5.86489 5.94623 6.03039 6.12276 6.13050 6.23260 6.28519 6.61051 7.06414 7.08543 7.55708 7.59747 7.92504 8.15966 8.61261 8.96365 9.43870 9.84192 10.83400 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001561 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.395820 B =17928.747849 C =18619.350845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 H 0.087 0.913 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.532 6.532 7 N -0.616 5.616 8 C 0.076 3.924 9 C 0.116 3.884 10 C 0.047 3.953 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.451 3.549 14 O -0.564 6.564 15 N -0.591 5.591 16 C -0.305 4.305 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.881 5.881 20 Si 0.880 3.120 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.075 4.075 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.118 4.118 29 C -0.116 4.116 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.353 0.647 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -22.375 29.792 37.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 H 0.105 0.895 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.408 6.408 7 N -0.350 5.350 8 C -0.068 4.068 9 C -0.007 4.007 10 C -0.084 4.084 11 N -0.300 5.300 12 C -0.083 4.083 13 C 0.236 3.764 14 O -0.446 6.446 15 N -0.230 5.230 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.521 5.521 20 Si 0.706 3.294 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.195 1.195 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.136 4.136 29 C -0.134 4.134 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.088 0.912 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.738 -22.306 28.873 36.493 hybrid contribution 1.493 1.002 1.195 2.159 sum 2.231 -21.304 30.068 36.918 Atomic orbital electron populations 1.21962 0.93526 1.01693 1.03422 1.19908 0.96889 0.99191 0.89604 0.89506 1.21782 1.02897 1.00174 0.92228 1.20696 0.79207 0.85650 0.84444 1.90698 1.39557 1.24430 1.86114 1.47871 1.56017 1.24878 1.06277 1.21857 0.95984 0.85591 1.03328 1.21414 0.98236 0.94739 0.86274 1.22254 0.98626 0.96121 0.91416 1.60013 1.05805 1.29274 1.34870 1.21686 0.96035 0.93963 0.96621 1.19693 0.86472 0.83152 0.87070 1.90564 1.23605 1.67724 1.62675 1.42203 1.19186 1.34141 1.27500 1.19442 1.07110 1.14603 1.02235 0.86255 1.25034 0.98318 0.96505 0.96278 1.69623 1.37756 1.23718 1.21049 0.86668 0.84221 0.79066 0.79412 1.19610 1.20180 1.19543 1.19908 0.97193 0.94210 0.96156 1.21015 1.00127 0.94372 0.97809 1.21152 0.98046 0.99886 0.94640 1.21158 0.98880 0.94932 0.99475 1.21167 0.99962 0.94968 0.97540 1.21131 0.97839 1.00011 0.94402 0.93142 0.92678 0.90154 0.88782 0.88791 0.92319 0.90513 0.91008 0.89325 0.89655 0.95127 0.91186 0.82786 0.93720 0.89521 0.79696 0.91628 0.86133 0.86150 0.86247 0.86111 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.74 37.16 0.32 -0.93 16 2 C -0.04 -0.29 2.21 -91.77 -0.20 -0.49 16 3 H 0.09 0.80 7.69 -51.93 -0.40 0.40 16 4 C -0.13 -0.90 3.47 -27.88 -0.10 -0.99 16 5 C 0.51 5.15 7.39 -10.99 -0.08 5.07 16 6 O -0.53 -7.33 13.54 5.55 0.08 -7.26 16 7 N -0.62 -5.51 2.87 -181.57 -0.52 -6.03 16 8 C 0.08 0.40 10.24 59.85 0.61 1.02 16 9 C 0.12 1.26 5.67 -4.04 -0.02 1.24 16 10 C 0.05 0.58 6.01 -3.83 -0.02 0.55 16 11 N -0.67 -10.64 6.13 -115.06 -0.70 -11.34 16 12 C 0.05 0.86 6.17 -4.98 -0.03 0.82 16 13 C 0.45 10.45 7.82 -10.98 -0.09 10.37 16 14 O -0.56 -15.41 15.78 5.55 0.09 -15.32 16 15 N -0.59 -14.33 5.09 -10.96 -0.06 -14.39 16 16 C -0.31 -8.76 10.16 -14.93 -0.15 -8.91 16 17 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 18 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.97 13.96 55.50 0.77 -25.20 16 20 Si 0.88 19.58 27.74 -169.99 -4.71 14.86 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 24 C -0.07 -0.55 4.78 -104.62 -0.50 -1.05 16 25 C -0.12 -0.75 8.76 -39.58 -0.35 -1.10 16 26 C -0.12 -0.73 10.05 -39.58 -0.40 -1.12 16 27 C -0.13 -0.78 10.05 -39.58 -0.40 -1.17 16 28 C -0.12 -0.77 10.05 -39.58 -0.40 -1.17 16 29 C -0.12 -0.84 9.67 -39.59 -0.38 -1.23 16 30 H 0.05 0.36 7.37 -51.93 -0.38 -0.02 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.86 5.95 -51.93 -0.31 0.55 16 33 H 0.09 0.54 7.40 -51.93 -0.38 0.15 16 34 H 0.09 0.48 7.55 -51.93 -0.39 0.09 16 35 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 37 H 0.07 0.27 6.44 -51.93 -0.33 -0.07 16 38 H 0.09 0.89 8.07 -51.93 -0.42 0.48 16 39 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 40 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.35 5.95 8.43 -39.30 -0.33 5.62 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.37 7.89 5.76 -40.82 -0.24 7.65 16 46 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.12 0.62 7.16 -52.49 -0.38 0.24 16 48 H 0.12 0.51 8.06 -52.49 -0.42 0.08 16 49 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 50 H 0.12 0.58 8.06 -52.48 -0.42 0.16 16 51 H 0.12 0.78 7.95 -52.49 -0.42 0.36 16 LS Contribution 416.57 15.07 6.28 6.28 Total: -1.00 -35.17 416.57 -9.20 -44.38 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.15 Total: 12.07 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: -2.28 Total: 1.96 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.51 Total: -56.96 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: 0.16 Total: -22.58 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -35.17 -9.20 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317660790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.592 kcal (2) G-P(sol) polarization free energy of solvation -35.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds