Wall clock time and date at job start Wed Apr 1 2020 04:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 C 1.50706 * 109.47267 * 65.00123 * 4 2 1 6 6 O 1.21284 * 119.99693 * 359.97438 * 5 4 2 7 7 N 1.34771 * 120.00154 * 180.02562 * 5 4 2 8 8 C 1.46497 * 120.00123 * 359.97438 * 7 5 4 9 9 C 1.46505 * 120.00007 * 179.97438 * 7 5 4 10 10 C 1.52997 * 109.47306 * 89.99619 * 9 7 5 11 11 N 1.46900 * 109.47465 * 180.02562 * 10 9 7 12 12 C 1.46902 * 111.00078 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.46587 * 179.97438 * 12 11 10 14 14 O 1.21288 * 120.00426 * 359.97438 * 13 12 11 15 15 N 1.34783 * 119.99851 * 179.97438 * 13 12 11 16 16 C 1.37093 * 120.00046 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00316 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99655 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99773 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 120.00135 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.46814 * 90.00655 * 20 18 16 22 22 H 1.48497 * 109.47359 * 209.99779 * 20 18 16 23 23 H 1.48491 * 109.47412 * 330.00601 * 20 18 16 24 24 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 25 25 C 1.38245 * 119.99431 * 59.73158 * 24 2 1 26 26 C 1.38237 * 119.99269 * 179.78957 * 25 24 2 27 27 C 1.38234 * 120.00384 * 0.43420 * 26 25 24 28 28 C 1.38233 * 119.99643 * 359.81821 * 27 26 25 29 29 C 1.38228 * 120.00126 * 240.00037 * 24 2 1 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 34 34 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 35 35 H 1.09009 * 109.46915 * 90.00673 * 8 7 5 36 36 H 1.09000 * 109.47236 * 210.00124 * 8 7 5 37 37 H 1.09001 * 109.47562 * 330.01021 * 8 7 5 38 38 H 1.08998 * 109.46720 * 209.99621 * 9 7 5 39 39 H 1.09001 * 109.46877 * 329.99610 * 9 7 5 40 40 H 1.09006 * 109.46964 * 299.99911 * 10 9 7 41 41 H 1.08995 * 109.47519 * 59.99582 * 10 9 7 42 42 H 1.00891 * 110.99679 * 56.04084 * 11 10 9 43 43 H 1.08991 * 109.47311 * 299.99677 * 12 11 10 44 44 H 1.09003 * 109.47272 * 60.00058 * 12 11 10 45 45 H 0.97003 * 120.00079 * 0.02562 * 15 13 12 46 46 H 0.97003 * 120.00217 * 179.97438 * 19 18 16 47 47 H 1.07995 * 119.99936 * 359.97438 * 25 24 2 48 48 H 1.08000 * 119.99610 * 180.27818 * 26 25 24 49 49 H 1.07998 * 120.00233 * 179.83582 * 27 26 25 50 50 H 1.08009 * 119.99828 * 179.97438 * 28 27 26 51 51 H 1.07992 * 120.00101 * 359.97438 * 29 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0572 -2.4766 6 8 1.0110 1.0871 -2.3632 7 7 1.9845 -0.3917 -3.7002 8 6 2.7455 -1.6360 -3.8371 9 6 1.5965 0.3647 -4.8933 10 6 2.6939 1.3740 -5.2367 11 7 2.3046 2.1329 -6.4327 12 6 3.3367 3.1144 -6.7925 13 6 2.9033 3.8713 -8.0214 14 8 1.8395 3.6178 -8.5461 15 7 3.6977 4.8300 -8.5375 16 6 3.3037 5.5183 -9.6557 17 1 2.3569 5.2920 -10.1234 18 6 4.1230 6.5063 -10.1880 19 7 3.7451 7.1664 -11.2596 20 14 5.7609 6.8972 -9.3795 21 1 6.8221 6.0452 -9.9739 22 1 6.0932 8.3276 -9.6004 23 1 5.6698 6.6295 -7.9218 24 6 2.0324 -0.7104 1.2304 25 6 1.6938 -2.0323 1.4519 26 6 2.1582 -2.6852 2.5784 27 6 2.9537 -2.0137 3.4879 28 6 3.2879 -0.6904 3.2690 29 6 2.8271 -0.0386 2.1403 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 3.1264 -0.7993 -1.2057 34 1 1.6055 -1.7197 -1.2953 35 1 2.0560 -2.4760 -3.9225 36 1 3.3680 -1.5847 -4.7304 37 1 3.3785 -1.7732 -2.9604 38 1 1.4590 -0.3210 -5.7294 39 1 0.6634 0.8942 -4.7003 40 1 2.8314 2.0597 -4.4005 41 1 3.6270 0.8447 -5.4295 42 1 1.4102 2.5809 -6.3013 43 1 3.4785 3.8117 -5.9670 44 1 4.2744 2.5973 -6.9966 45 1 4.5486 5.0325 -8.1181 46 1 4.3169 7.8564 -11.6311 47 1 1.0690 -2.5557 0.7434 48 1 1.8974 -3.7192 2.7492 49 1 3.3143 -2.5231 4.3693 50 1 3.9091 -0.1656 3.9798 51 1 3.0883 0.9952 1.9693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317660790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:38 Heat of formation + Delta-G solvation = -69.550088 kcal Electronic energy + Delta-G solvation = -29112.701618 eV Core-core repulsion = 25010.838920 eV Total energy + Delta-G solvation = -4101.862698 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28761 -40.34574 -40.07450 -37.64202 -36.29844 -35.90800 -35.74843 -33.76999 -31.77258 -31.59147 -30.45815 -28.92347 -28.08683 -27.01369 -25.46989 -24.41388 -23.44651 -23.10913 -21.39237 -21.16749 -20.33813 -19.83696 -18.37620 -17.90627 -17.46444 -17.20904 -17.11202 -16.75960 -16.67829 -16.09264 -15.81525 -15.58093 -15.36842 -15.04492 -14.92842 -14.67273 -14.55622 -14.36555 -14.22508 -14.08283 -13.90702 -13.81263 -13.60497 -13.45205 -13.27294 -13.14423 -12.94613 -12.78574 -12.66136 -12.42921 -12.21531 -12.14228 -12.03186 -11.99126 -11.72482 -11.54515 -11.53132 -10.73675 -10.49868 -10.26749 -9.77215 -9.68880 -9.57363 -9.44851 -8.42675 -6.03923 0.48327 0.54807 1.29510 1.34574 1.43681 1.62801 1.91951 1.95180 2.21948 2.75237 2.92602 3.13117 3.38809 3.54763 3.77098 3.93540 4.01712 4.09239 4.11450 4.18152 4.19644 4.23030 4.34939 4.35896 4.39561 4.47861 4.49815 4.54430 4.63415 4.65017 4.69225 4.72679 4.81491 4.85453 4.95863 4.98523 5.04603 5.16719 5.18772 5.25071 5.35830 5.47181 5.53015 5.64032 5.68404 5.78216 5.85322 5.97783 6.16857 6.24502 6.40960 6.57505 6.85708 7.19656 7.37029 7.93175 8.74919 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019116 B = 0.001561 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.395820 B =17928.747849 C =18619.350845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.033 4.033 3 H 0.065 0.935 4 C -0.121 4.121 5 C 0.505 3.495 6 O -0.578 6.578 7 N -0.614 5.614 8 C 0.069 3.931 9 C 0.121 3.879 10 C 0.057 3.943 11 N -0.680 5.680 12 C 0.064 3.936 13 C 0.448 3.552 14 O -0.613 6.613 15 N -0.589 5.589 16 C -0.332 4.332 17 H 0.055 0.945 18 C -0.014 4.014 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.234 1.234 24 C -0.082 4.082 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.133 4.133 28 C -0.128 4.128 29 C -0.133 4.133 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.112 0.888 34 H 0.118 0.882 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.021 0.979 41 H 0.090 0.910 42 H 0.343 0.657 43 H 0.070 0.930 44 H 0.119 0.881 45 H 0.390 0.610 46 H 0.280 0.720 47 H 0.135 0.865 48 H 0.140 0.860 49 H 0.137 0.863 50 H 0.134 0.866 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.703 -24.761 32.614 41.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.052 4.052 3 H 0.084 0.916 4 C -0.160 4.160 5 C 0.295 3.705 6 O -0.458 6.458 7 N -0.347 5.347 8 C -0.073 4.073 9 C -0.003 4.003 10 C -0.073 4.073 11 N -0.312 5.312 12 C -0.069 4.069 13 C 0.236 3.764 14 O -0.498 6.498 15 N -0.231 5.231 16 C -0.461 4.461 17 H 0.074 0.926 18 C -0.212 4.212 19 N -0.573 5.573 20 Si 0.785 3.215 21 H -0.179 1.179 22 H -0.199 1.199 23 H -0.157 1.157 24 C -0.082 4.082 25 C -0.138 4.138 26 C -0.142 4.142 27 C -0.151 4.151 28 C -0.146 4.146 29 C -0.151 4.151 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.161 0.839 43 H 0.088 0.912 44 H 0.137 0.863 45 H 0.226 0.774 46 H 0.089 0.911 47 H 0.153 0.847 48 H 0.158 0.842 49 H 0.155 0.845 50 H 0.151 0.849 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.930 -24.745 31.716 40.419 hybrid contribution 0.375 1.681 0.289 1.746 sum 4.306 -23.065 32.005 39.685 Atomic orbital electron populations 1.21892 0.94279 1.02142 1.01844 1.19792 0.96203 0.98434 0.90729 0.91612 1.21777 1.04002 1.00393 0.89830 1.21307 0.78425 0.85276 0.85504 1.90687 1.41686 1.26614 1.86797 1.47961 1.55861 1.25623 1.05222 1.22138 0.96337 0.84118 1.04712 1.21231 0.96827 0.94770 0.87464 1.22251 0.99805 0.95760 0.89509 1.60046 1.05210 1.29049 1.36930 1.21619 0.97128 0.94342 0.93806 1.20919 0.85311 0.82213 0.87971 1.90542 1.25850 1.68891 1.64505 1.42018 1.20248 1.34264 1.26584 1.19028 1.05778 1.16791 1.04495 0.92641 1.26117 1.03337 0.95228 0.96549 1.69803 1.40096 1.24437 1.22996 0.85356 0.77126 0.78875 0.80110 1.17896 1.19944 1.15708 1.19851 0.97740 0.94701 0.95899 1.21207 1.00180 0.94004 0.98384 1.21452 0.97601 1.00877 0.94290 1.21461 0.98643 0.94853 1.00141 1.21394 1.00153 0.95468 0.97551 1.21276 0.98490 1.00284 0.95034 0.91612 0.93222 0.92688 0.86976 0.86393 0.90841 0.89882 0.88873 0.88393 0.92099 0.96044 0.89168 0.83910 0.91233 0.86296 0.77449 0.91084 0.84696 0.84189 0.84477 0.84854 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.74 71.98 0.63 -1.82 16 2 C -0.03 -0.49 2.21 -11.54 -0.03 -0.52 16 3 H 0.07 1.26 7.69 -2.39 -0.02 1.24 16 4 C -0.12 -1.41 3.47 29.85 0.10 -1.31 16 5 C 0.50 9.71 7.39 87.66 0.65 10.36 16 6 O -0.58 -16.43 13.54 -3.04 -0.04 -16.47 16 7 N -0.61 -9.87 2.87 -846.75 -2.43 -12.30 16 8 C 0.07 0.50 10.24 127.77 1.31 1.81 16 9 C 0.12 2.53 5.67 86.38 0.49 3.01 16 10 C 0.06 1.31 6.01 86.30 0.52 1.82 16 11 N -0.68 -21.02 6.13 -517.94 -3.17 -24.19 16 12 C 0.06 2.03 6.17 85.56 0.53 2.56 16 13 C 0.45 20.82 7.82 87.66 0.69 21.51 16 14 O -0.61 -34.89 15.78 -3.06 -0.05 -34.94 16 15 N -0.59 -28.42 5.09 -306.98 -1.56 -29.98 16 16 C -0.33 -19.78 10.16 84.04 0.85 -18.93 16 17 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 18 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 19 N -0.93 -56.74 13.96 21.66 0.30 -56.44 16 20 Si 0.97 39.17 27.74 68.60 1.90 41.08 16 21 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 22 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.23 -8.05 6.52 99.48 0.65 -7.41 16 24 C -0.08 -1.09 4.78 -19.87 -0.09 -1.18 16 25 C -0.12 -1.28 8.76 22.27 0.20 -1.08 16 26 C -0.12 -1.19 10.05 22.27 0.22 -0.97 16 27 C -0.13 -1.34 10.05 22.27 0.22 -1.12 16 28 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 29 C -0.13 -1.83 9.67 22.27 0.22 -1.61 16 30 H 0.06 0.87 7.37 -2.39 -0.02 0.85 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 1.23 5.95 -2.39 -0.01 1.22 16 33 H 0.11 0.94 7.40 -2.39 -0.02 0.92 16 34 H 0.12 0.83 7.55 -2.39 -0.02 0.81 16 35 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 36 H 0.08 0.55 8.07 -2.39 -0.02 0.53 16 37 H 0.09 0.31 6.44 -2.39 -0.02 0.29 16 38 H 0.10 1.85 8.07 -2.39 -0.02 1.83 16 39 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 40 H 0.02 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.34 11.75 8.43 -89.70 -0.76 11.00 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 46 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 47 H 0.14 0.97 7.16 -2.91 -0.02 0.95 16 48 H 0.14 0.73 8.06 -2.91 -0.02 0.71 16 49 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 50 H 0.13 1.10 8.06 -2.91 -0.02 1.07 16 51 H 0.12 1.57 7.95 -2.91 -0.02 1.54 16 Total: -1.00 -83.34 416.57 1.73 -81.61 By element: Atomic # 1 Polarization: 41.06 SS G_CDS: -0.41 Total: 40.65 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 7.19 Total: 10.97 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -6.87 Total: -122.91 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.09 Total: -51.41 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.90 Total: 41.08 kcal Total: -83.34 1.73 -81.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317660790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.061 kcal (2) G-P(sol) polarization free energy of solvation -83.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds