Wall clock time and date at job start Wed Apr 1 2020 05:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47067 * 2 1 4 4 C 1.50701 * 109.47198 * 120.00829 * 2 1 3 5 5 O 1.21271 * 120.00046 * 102.30083 * 4 2 1 6 6 N 1.34782 * 119.99612 * 282.30196 * 4 2 1 7 7 C 1.46491 * 119.99664 * 184.03376 * 6 4 2 8 8 C 1.46502 * 119.99985 * 4.02570 * 6 4 2 9 9 H 1.09004 * 109.47176 * 5.65111 * 8 6 4 10 10 C 1.53005 * 109.46751 * 125.64631 * 8 6 4 11 11 C 1.52996 * 109.47329 * 245.65149 * 8 6 4 12 12 N 1.46891 * 109.47440 * 54.99990 * 11 8 6 13 13 C 1.46898 * 111.00178 * 180.02562 * 12 11 8 14 14 C 1.50700 * 109.47019 * 180.02562 * 13 12 11 15 15 O 1.21295 * 120.00272 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99837 * 179.97438 * 14 13 12 17 17 C 1.37106 * 120.00156 * 179.97438 * 16 14 13 18 18 H 1.08006 * 119.99575 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00184 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00028 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47050 * 90.00586 * 21 19 17 23 23 H 1.48511 * 109.46985 * 209.99902 * 21 19 17 24 24 H 1.48494 * 109.47445 * 329.99833 * 21 19 17 25 25 C 1.50709 * 109.46753 * 240.00614 * 2 1 3 26 26 C 1.38233 * 119.99628 * 299.72674 * 25 2 1 27 27 C 1.38241 * 119.99456 * 179.81529 * 26 25 2 28 28 C 1.38227 * 119.99926 * 0.39276 * 27 26 25 29 29 C 1.38233 * 120.00374 * 359.85746 * 28 27 26 30 30 C 1.38227 * 119.99912 * 120.00007 * 25 2 1 31 31 H 1.08996 * 109.47111 * 182.54103 * 1 2 3 32 32 H 1.08995 * 109.47055 * 302.53787 * 1 2 3 33 33 H 1.09002 * 109.46999 * 62.53443 * 1 2 3 34 34 H 1.09003 * 109.47334 * 271.60628 * 7 6 4 35 35 H 1.08991 * 109.47659 * 31.60871 * 7 6 4 36 36 H 1.09001 * 109.47271 * 151.61323 * 7 6 4 37 37 H 1.09001 * 109.46397 * 60.00456 * 10 8 6 38 38 H 1.09001 * 109.46955 * 179.97438 * 10 8 6 39 39 H 1.08999 * 109.47476 * 300.00212 * 10 8 6 40 40 H 1.09003 * 109.47002 * 175.00769 * 11 8 6 41 41 H 1.09004 * 109.46636 * 294.99796 * 11 8 6 42 42 H 1.00902 * 110.99665 * 56.04697 * 12 11 8 43 43 H 1.08996 * 109.46843 * 299.99860 * 13 12 11 44 44 H 1.08997 * 109.47305 * 59.99978 * 13 12 11 45 45 H 0.96998 * 120.00266 * 0.02562 * 16 14 13 46 46 H 0.97003 * 120.00075 * 179.97438 * 20 19 17 47 47 H 1.07997 * 120.00416 * 359.97438 * 26 25 2 48 48 H 1.07998 * 119.99502 * 180.22808 * 27 26 25 49 49 H 1.08009 * 120.00006 * 179.83282 * 28 27 26 50 50 H 1.08003 * 120.00351 * 179.97438 * 29 28 27 51 51 H 1.07999 * 120.00328 * 359.97438 * 30 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 8 2.4455 -1.8478 1.1476 6 7 2.0226 -0.0822 2.4227 7 6 2.5919 -0.7393 3.6016 8 6 1.4427 1.2581 2.5395 9 1 0.9835 1.5393 1.5917 10 6 0.3807 1.2600 3.6410 11 6 2.5433 2.2612 2.8904 12 7 3.6207 2.1740 1.8957 13 6 4.6979 3.1248 2.2015 14 6 5.7822 3.0069 1.1617 15 8 5.6686 2.2095 0.2547 16 7 6.8777 3.7881 1.2389 17 6 7.8645 3.6805 0.2931 18 1 7.7637 2.9699 -0.5140 19 6 8.9942 4.4856 0.3730 20 7 9.1170 5.3498 1.3553 21 14 10.3382 4.3393 -0.9160 22 1 10.0554 5.2745 -2.0343 23 1 11.6486 4.6797 -0.3056 24 1 10.3794 2.9478 -1.4326 25 6 2.0323 -0.7103 -1.2306 26 6 1.7030 -2.0354 -1.4466 27 6 2.1605 -2.6858 -2.5773 28 6 2.9541 -2.0135 -3.4879 29 6 3.2877 -0.6900 -3.2693 30 6 2.8270 -0.0385 -2.1405 31 1 -0.3633 -1.0266 0.0456 32 1 -0.3633 0.5527 0.8663 33 1 -0.3633 0.4740 -0.9119 34 1 1.8240 -1.3401 4.0891 35 1 3.4169 -1.3826 3.2962 36 1 2.9582 0.0158 4.2972 37 1 0.8399 0.9789 4.5887 38 1 -0.0505 2.2573 3.7282 39 1 -0.4034 0.5454 3.3910 40 1 2.1294 3.2696 2.8902 41 1 2.9418 2.0323 3.8788 42 1 3.2642 2.3187 0.9629 43 1 4.2992 4.1392 2.1968 44 1 5.1113 2.9015 3.1850 45 1 6.9684 4.4260 1.9639 46 1 9.9058 5.9115 1.4113 47 1 1.0861 -2.5617 -0.7333 48 1 1.9002 -3.7200 -2.7479 49 1 3.3138 -2.5225 -4.3700 50 1 3.9081 -0.1649 -3.9805 51 1 3.0876 0.9956 -1.9697 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319562219.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:58 Heat of formation + Delta-G solvation = -42.726791 kcal Electronic energy + Delta-G solvation = -31495.316270 eV Core-core repulsion = 27394.616718 eV Total energy + Delta-G solvation = -4100.699553 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52412 -38.79279 -38.25103 -36.96998 -34.58956 -34.18391 -33.73807 -31.35518 -31.12455 -30.67284 -29.54336 -27.71003 -27.14277 -25.04702 -24.40599 -23.30644 -22.41539 -21.92665 -21.12438 -19.31823 -18.80940 -17.88770 -17.33913 -16.77362 -16.27500 -15.68742 -15.52433 -15.32201 -14.90938 -14.62716 -14.55808 -14.37637 -14.21668 -13.87333 -13.67083 -13.51249 -13.39812 -13.08835 -13.01343 -12.79607 -12.62147 -12.39037 -12.25179 -12.12289 -11.98919 -11.86237 -11.74644 -11.55626 -11.50546 -11.44596 -11.05396 -11.00278 -10.83614 -10.74514 -10.39014 -10.21579 -9.54395 -9.50382 -8.64670 -8.63228 -8.52981 -8.42100 -8.08709 -7.95684 -6.41700 -3.82269 1.51655 1.66143 2.81333 3.06145 3.17934 3.26737 3.33261 3.90488 3.97853 4.03774 4.25535 4.49875 4.58158 4.64053 4.83847 5.00758 5.01835 5.05013 5.12450 5.18806 5.24787 5.28499 5.31796 5.34003 5.40203 5.43239 5.48249 5.53880 5.59993 5.61493 5.69651 5.74035 5.76966 5.79409 5.86412 5.94407 5.98113 5.99264 6.17749 6.24543 6.27096 6.55686 6.67504 6.72691 6.82032 7.13284 7.20355 7.47454 7.55522 7.56981 8.06445 8.35097 8.61375 9.18347 9.54379 10.05900 10.76098 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009018 B = 0.003338 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3104.120486 B = 8385.000215 C =10756.178423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.069 4.069 3 H 0.100 0.900 4 C 0.533 3.467 5 O -0.534 6.534 6 N -0.593 5.593 7 C 0.095 3.905 8 C 0.129 3.871 9 H 0.095 0.905 10 C -0.160 4.160 11 C 0.042 3.958 12 N -0.662 5.662 13 C 0.052 3.948 14 C 0.440 3.560 15 O -0.579 6.579 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.072 4.072 26 C -0.081 4.081 27 C -0.132 4.132 28 C -0.121 4.121 29 C -0.123 4.123 30 C -0.098 4.098 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.344 0.656 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.391 0.609 46 H 0.271 0.729 47 H 0.119 0.881 48 H 0.116 0.884 49 H 0.117 0.883 50 H 0.121 0.879 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.570 -6.701 2.162 21.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 H 0.118 0.882 4 C 0.320 3.680 5 O -0.410 6.410 6 N -0.325 5.325 7 C -0.048 4.048 8 C 0.024 3.976 9 H 0.113 0.887 10 C -0.219 4.219 11 C -0.088 4.088 12 N -0.294 5.294 13 C -0.081 4.081 14 C 0.225 3.775 15 O -0.463 6.463 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.073 4.073 26 C -0.099 4.099 27 C -0.150 4.150 28 C -0.139 4.139 29 C -0.141 4.141 30 C -0.116 4.116 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.163 0.837 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.137 0.863 48 H 0.134 0.866 49 H 0.135 0.865 50 H 0.139 0.861 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.934 -8.252 1.873 21.656 hybrid contribution 0.677 1.460 -0.184 1.620 sum -19.258 -6.792 1.689 20.490 Atomic orbital electron populations 1.21877 0.92394 1.02983 1.02741 1.20237 0.97014 1.00431 0.91312 0.88159 1.20244 0.77639 0.86262 0.83816 1.90680 1.46790 1.18306 1.85267 1.47520 1.59682 1.16553 1.08788 1.21457 0.98471 0.97550 0.87293 1.21366 0.93104 0.82639 1.00465 0.88745 1.22108 0.98392 1.02586 0.98798 1.22431 0.92048 0.96803 0.97537 1.60015 1.09902 1.54037 1.05450 1.21665 0.92917 0.93736 0.99746 1.19796 0.84461 0.84903 0.88315 1.90543 1.79718 1.39234 1.36772 1.41858 1.16895 1.34851 1.26493 1.19698 0.96706 1.20210 1.06120 0.87953 1.25244 0.98764 0.95966 0.97928 1.69611 1.30013 1.23364 1.31434 0.85874 0.79601 0.78897 0.80045 1.20427 1.20920 1.19382 1.19274 0.98887 0.94455 0.94664 1.20893 0.99246 0.93720 0.96082 1.21051 0.99309 0.99593 0.95011 1.21110 0.98543 0.94883 0.99378 1.21097 1.00107 0.94972 0.97962 1.21114 0.96131 1.00425 0.93896 0.91834 0.91758 0.91121 0.93555 0.90806 0.91431 0.91779 0.91208 0.91876 0.94298 0.90540 0.83684 0.93942 0.89703 0.77543 0.91909 0.86345 0.86551 0.86542 0.86121 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.63 37.16 0.32 -0.96 16 2 C -0.07 -0.85 2.03 -92.92 -0.19 -1.04 16 3 H 0.10 1.22 5.75 -51.93 -0.30 0.92 16 4 C 0.53 7.82 6.83 -10.98 -0.07 7.74 16 5 O -0.53 -9.79 14.25 5.57 0.08 -9.71 16 6 N -0.59 -7.17 2.49 -173.94 -0.43 -7.60 16 7 C 0.09 1.10 9.25 59.84 0.55 1.66 16 8 C 0.13 1.18 2.15 -67.93 -0.15 1.03 16 9 H 0.09 0.79 4.33 -51.93 -0.22 0.57 16 10 C -0.16 -1.05 9.11 37.16 0.34 -0.71 16 11 C 0.04 0.45 5.05 -3.83 -0.02 0.43 16 12 N -0.66 -9.95 5.85 -115.07 -0.67 -10.62 16 13 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 14 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 15 O -0.58 -15.55 15.78 5.54 0.09 -15.46 16 16 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 18 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 21 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 25 C -0.07 -1.05 4.58 -104.62 -0.48 -1.53 16 26 C -0.08 -1.15 7.87 -39.58 -0.31 -1.46 16 27 C -0.13 -1.73 10.05 -39.58 -0.40 -2.13 16 28 C -0.12 -1.58 10.05 -39.59 -0.40 -1.98 16 29 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 16 30 C -0.10 -1.47 9.67 -39.59 -0.38 -1.86 16 31 H 0.06 0.59 7.50 -51.93 -0.39 0.20 16 32 H 0.06 0.46 6.30 -51.93 -0.33 0.14 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 1.05 7.53 -51.93 -0.39 0.66 16 36 H 0.07 0.68 6.76 -51.93 -0.35 0.33 16 37 H 0.06 0.42 7.49 -51.93 -0.39 0.03 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.79 7.08 -51.93 -0.37 0.42 16 42 H 0.34 5.34 7.36 -39.29 -0.29 5.05 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.10 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.12 1.61 7.10 -52.49 -0.37 1.24 16 48 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 49 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 50 H 0.12 1.53 8.06 -52.48 -0.42 1.11 16 51 H 0.13 1.87 7.95 -52.49 -0.42 1.46 16 LS Contribution 411.70 15.07 6.20 6.20 Total: -1.00 -34.37 411.70 -8.91 -43.28 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -7.88 Total: 15.76 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.94 Total: 0.09 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.44 Total: -56.34 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.17 Total: -25.18 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.37 -8.91 -43.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319562219.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.550 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds